Abstract
Cofilin/ADF proteins play key roles in the dynamics of actin, one of the most abundant and highly conserved eukaryotic proteins. We used cryoelectron microscopy to generate a 9-Å resolution three-dimensional reconstruction of cofilin-decorated actin filaments, the highest resolution achieved for a complex of F-actin with an actin-binding protein. We show that the cofilin-induced change in the filament twist is due to a unique conformation of the actin molecule unrelated to any previously observed state. The changes between the actin protomer in naked F-actin and in the actin-cofilin filament are greater than the conformational changes between G- and F-actin. Our results show the structural plasticity of actin, suggest that other actin-binding proteins may also induce large but different conformational changes, and show that F-actin cannot be described by a single molecular model.
References
50
Referenced
197
-
TD Pollard, JA Cooper, Actin, a central player in cell shape and movement. Science 326, 1208–1212 (2009).
(
10.1126/science.1175862
) / Science / Actin, a central player in cell shape and movement by Pollard TD (2009) -
T Oda, M Iwasa, T Aihara, Y Maeda, A Narita, The nature of the globular- to fibrous-actin transition. Nature 457, 441–445 (2009).
(
10.1038/nature07685
) / Nature / The nature of the globular- to fibrous-actin transition by Oda T (2009) -
T Fujii, AH Iwane, T Yanagida, K Namba, Direct visualization of secondary structures of F-actin by electron cryomicroscopy. Nature 467, 724–728 (2010).
(
10.1038/nature09372
) / Nature / Direct visualization of secondary structures of F-actin by electron cryomicroscopy by Fujii T (2010) -
VE Galkin, A Orlova, GF Schroder, EH Egelman, Structural polymorphism in F-actin. Nat Struct Mol Biol 17, 1318–1323 (2010).
(
10.1038/nsmb.1930
) / Nat Struct Mol Biol / Structural polymorphism in F-actin by Galkin VE (2010) -
MF Schmid, MB Sherman, P Matsudaira, W Chiu, Structure of the acrosomal bundle. Nature 431, 104–107 (2004).
(
10.1038/nature02881
) / Nature / Structure of the acrosomal bundle by Schmid MF (2004) -
VE Galkin, A Orlova, O Cherepanova, MC Lebart, EH Egelman, High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex. Proc Natl Acad Sci USA 105, 1494–1498 (2008).
(
10.1073/pnas.0708667105
) / Proc Natl Acad Sci USA / High-resolution cryo-EM structure of the F-actin-fimbrin/plastin ABD2 complex by Galkin VE (2008) -
KC Holmes, I Angert, FJ Kull, W Jahn, RR Schroder, Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide. Nature 425, 423–427 (2003).
(
10.1038/nature02005
) / Nature / Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide by Holmes KC (2003) -
JR Bamburg, et al., ADF/Cofilin-actin rods in neurodegenerative diseases. Curr Alzheimer Res 7, 241–250 (2010).
(
10.2174/156720510791050902
) / Curr Alzheimer Res / ADF/Cofilin-actin rods in neurodegenerative diseases by Bamburg JR (2010) -
BW Bernstein, JR Bamburg, ADF/cofilin: A functional node in cell biology. Trends Cell Biol 20, 187–195 (2010).
(
10.1016/j.tcb.2010.01.001
) / Trends Cell Biol / ADF/cofilin: A functional node in cell biology by Bernstein BW (2010) -
EH Egelman, A robust algorithm for the reconstruction of helical filaments using single-particle methods. Ultramicroscopy 85, 225–234 (2000).
(
10.1016/S0304-3991(00)00062-0
) / Ultramicroscopy / A robust algorithm for the reconstruction of helical filaments using single-particle methods by Egelman EH (2000) -
PB Rosenthal, R Henderson, Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J Mol Biol 333, 721–745 (2003).
(
10.1016/j.jmb.2003.07.013
) / J Mol Biol / Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy by Rosenthal PB (2003) -
GF Schroder, AT Brunger, M Levitt, Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure 15, 1630–1641 (2007).
(
10.1016/j.str.2007.09.021
) / Structure / Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution by Schroder GF (2007) -
BJ Pope, KM Zierler-Gould, R Kuhne, AG Weeds, LJ Ball, Solution structure of human cofilin: Actin binding, pH sensitivity, and relationship to actin-depolymerizing factor. J Biol Chem 279, 4840–4848 (2004).
(
10.1074/jbc.M310148200
) / J Biol Chem / Solution structure of human cofilin: Actin binding, pH sensitivity, and relationship to actin-depolymerizing factor by Pope BJ (2004) -
CE Schutt, JC Myslik, MD Rozycki, NCW Goonesekere, U Lindberg, The structure of crystalline profilin:β-actin. Nature 365, 810–816 (1993).
(
10.1038/365810a0
) / Nature / The structure of crystalline profilin:β-actin by Schutt CE (1993) -
P Lappalainen, EV Fedorov, AA Fedorov, SC Almo, DG Drubin, Essential functions and actin-binding surfaces of yeast cofilin revealed by systematic mutagenesis. EMBO J 16, 5520–5530 (1997).
(
10.1093/emboj/16.18.5520
) / EMBO J / Essential functions and actin-binding surfaces of yeast cofilin revealed by systematic mutagenesis by Lappalainen P (1997) -
VO Paavilainen, E Oksanen, A Goldman, P Lappalainen, Structure of the actin-depolymerizing factor homology domain in complex with actin. J Cell Biol 182, 51–59 (2008).
(
10.1083/jcb.200803100
) / J Cell Biol / Structure of the actin-depolymerizing factor homology domain in complex with actin by Paavilainen VO (2008) -
HG Mannherz, et al., Mapping the ADF/cofilin binding site on monomeric actin by competitive cross-linking and peptide array: Evidence for a second binding site on monomeric actin. J Mol Biol 366, 745–755 (2007).
(
10.1016/j.jmb.2006.11.100
) / J Mol Biol / Mapping the ADF/cofilin binding site on monomeric actin by competitive cross-linking and peptide array: Evidence for a second binding site on monomeric actin by Mannherz HG (2007) -
K Moriyama, I Yahara, The actin-severing activity of cofilin is exerted by the interplay of three distinct sites on cofilin and essential for cell viability. Biochem J 365, 147–155 (2002).
(
10.1042/bj20020231
) / Biochem J / The actin-severing activity of cofilin is exerted by the interplay of three distinct sites on cofilin and essential for cell viability by Moriyama K (2002) -
TE Morgan, RO Lockerbie, LS Minamide, MD Browning, JR Bamburg, Isolation and characterization of a regulated form of actin depolymerizing factor. J Cell Biol 122, 623–633 (1993).
(
10.1083/jcb.122.3.623
) / J Cell Biol / Isolation and characterization of a regulated form of actin depolymerizing factor by Morgan TE (1993) -
MA Rould, Q Wan, PB Joel, S Lowey, KM Trybus, Crystal structures of expressed non-polymerizable monomeric actin in the ADP and ATP states. J Biol Chem 281, 31909–31919 (2006).
(
10.1016/S0021-9258(19)84105-4
) / J Biol Chem / Crystal structures of expressed non-polymerizable monomeric actin in the ADP and ATP states by Rould MA (2006) -
VE Galkin, et al., ADF/cofilin use an intrinsic mode of F-actin instability to disrupt actin filaments. J Cell Biol 163, 1057–1066 (2003).
(
10.1083/jcb.200308144
) / J Cell Biol / ADF/cofilin use an intrinsic mode of F-actin instability to disrupt actin filaments by Galkin VE (2003) -
A McGough, B Pope, W Chiu, A Weeds, Cofilin changes the twist of F-actin: Implications for actin filament dynamics and cellular function. J Cell Biol 138, 771–781 (1997).
(
10.1083/jcb.138.4.771
) / J Cell Biol / Cofilin changes the twist of F-actin: Implications for actin filament dynamics and cellular function by McGough A (1997) -
EH Egelman, N Francis, DJ DeRosier, F-actin is a helix with a random variable twist. Nature 298, 131–135 (1982).
(
10.1038/298131a0
) / Nature / F-actin is a helix with a random variable twist by Egelman EH (1982) -
MF Schmid, MB Sherman, P Matsudaira, W Chiu, Structure of the acrosomal bundle. Nature 431, 104–107 (2004).
(
10.1038/nature02881
) / Nature / Structure of the acrosomal bundle by Schmid MF (2004) -
A Muhlrad, et al., Cofilin induced conformational changes in F-actin expose subdomain 2 to proteolysis. J Mol Biol 342, 1559–1567 (2004).
(
10.1016/j.jmb.2004.08.010
) / J Mol Biol / Cofilin induced conformational changes in F-actin expose subdomain 2 to proteolysis by Muhlrad A (2004) -
AA Bobkov, et al., Structural effects of cofilin on longitudinal contacts in F-actin. J Mol Biol 323, 739–750 (2002).
(
10.1016/S0022-2836(02)01008-2
) / J Mol Biol / Structural effects of cofilin on longitudinal contacts in F-actin by Bobkov AA (2002) -
GM Suel, SW Lockless, MA Wall, R Ranganathan, Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nat Struct Biol 10, 59–69 (2003).
(
10.1038/nsb881
) / Nat Struct Biol / Evolutionarily conserved networks of residues mediate allosteric communication in proteins by Suel GM (2003) -
A Orlova, E Prochniewicz, EH Egelman, Structural dynamics of F-actin. II. Co-operativity in structural transitions. J Mol Biol 245, 598–607 (1995).
(
10.1006/jmbi.1994.0049
) / J Mol Biol / Structural dynamics of F-actin. II. Co-operativity in structural transitions by Orlova A (1995) -
E Prochniewicz, Q Zhang, PA Janmey, DD Thomas, Cooperativity in F-actin: Binding of gelsolin at the barbed end affects structure and dynamics of the whole filament. J Mol Biol 260, 756–766 (1996).
(
10.1006/jmbi.1996.0435
) / J Mol Biol / Cooperativity in F-actin: Binding of gelsolin at the barbed end affects structure and dynamics of the whole filament by Prochniewicz E (1996) -
S Khaitlina, H Hinssen, Conformational changes in actin induced by its interaction with gelsolin. Biophys J 73, 929–937 (1997).
(
10.1016/S0006-3495(97)78125-6
) / Biophys J / Conformational changes in actin induced by its interaction with gelsolin by Khaitlina S (1997) -
B Bugyi, et al., Formins regulate actin filament flexibility through long range allosteric interactions. J Biol Chem 281, 10727–10736 (2006).
(
10.1074/jbc.M510252200
) / J Biol Chem / Formins regulate actin filament flexibility through long range allosteric interactions by Bugyi B (2006) -
A Orlova, EH Egelman, A conformational change in the actin subunit can change the flexibility of the actin filament. J Mol Biol 232, 334–341 (1993).
(
10.1006/jmbi.1993.1393
) / J Mol Biol / A conformational change in the actin subunit can change the flexibility of the actin filament by Orlova A (1993) -
BR McCullough, L Blanchoin, JL Martiel, EM De La Cruz, Cofilin increases the bending flexibility of actin filaments: Implications for severing and cell mechanics. J Mol Biol 381, 550–558 (2008).
(
10.1016/j.jmb.2008.05.055
) / J Mol Biol / Cofilin increases the bending flexibility of actin filaments: Implications for severing and cell mechanics by McCullough BR (2008) -
DE Dupuis, WH Guilford, J Wu, DM Warshaw, Actin filament mechanics in the laser trap. J Muscle Res Cell Motil 18, 17–30 (1997).
(
10.1023/A:1018672631256
) / J Muscle Res Cell Motil / Actin filament mechanics in the laser trap by Dupuis DE (1997) -
F Gittes, B Mickey, J Nettleton, J Howard, Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape. J Cell Biol 120, 923–934 (1993).
(
10.1083/jcb.120.4.923
) / J Cell Biol / Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape by Gittes F (1993) -
MJ van, KC Vermeulen, F Gittes, CF Schmidt, Leveraging single protein polymers to measure flexural rigidity. J Phys Chem B 113, 3837–3844 (2009).
(
10.1021/jp808328a
) / J Phys Chem B / Leveraging single protein polymers to measure flexural rigidity by van MJ (2009) -
H Isambert, et al., Flexibility of actin filaments derived from thermal fluctuations. Effect of bound nucleotide, phalloidin, and muscle regulatory proteins. J Biol Chem 270, 11437–11444 (1995).
(
10.1074/jbc.270.19.11437
) / J Biol Chem / Flexibility of actin filaments derived from thermal fluctuations. Effect of bound nucleotide, phalloidin, and muscle regulatory proteins by Isambert H (1995) -
C Suarez, et al., Cofilin tunes the nucleotide state of actin filaments and severs at bare and decorated segment boundaries. Curr Biol 21, 862–868 (2011).
(
10.1016/j.cub.2011.03.064
) / Curr Biol / Cofilin tunes the nucleotide state of actin filaments and severs at bare and decorated segment boundaries by Suarez C (2011) -
G Drewes, H Faulstich, Cooperative effects on filament stability in actin modified at the C-terminus by substitution or truncation. Eur J Biochem 212, 247–253 (1993).
(
10.1111/j.1432-1033.1993.tb17656.x
) / Eur J Biochem / Cooperative effects on filament stability in actin modified at the C-terminus by substitution or truncation by Drewes G (1993) -
E Prochniewicz, E Katayama, T Yanagida, DD Thomas, Cooperativity in F-actin: Chemical modifications of actin monomers affect the functional interactions of myosin with unmodified monomers in the same actin filament. Biophys J 65, 113–123 (1993).
(
10.1016/S0006-3495(93)81057-9
) / Biophys J / Cooperativity in F-actin: Chemical modifications of actin monomers affect the functional interactions of myosin with unmodified monomers in the same actin filament by Prochniewicz E (1993) -
AA Bobkov, et al., Cooperative effects of cofilin (ADF) on actin structure suggest allosteric mechanism of cofilin function. J Mol Biol 356, 325–334 (2006).
(
10.1016/j.jmb.2005.11.072
) / J Mol Biol / Cooperative effects of cofilin (ADF) on actin structure suggest allosteric mechanism of cofilin function by Bobkov AA (2006) -
E Kim, E Bobkova, G Hegyi, A Muhlrad, E Reisler, Actin cross-linking and inhibition of the actomyosin motor. Biochemistry 41, 86–93 (2002).
(
10.1021/bi0113824
) / Biochemistry / Actin cross-linking and inhibition of the actomyosin motor by Kim E (2002) -
DH Schwyter, SJ Kron, YY Toyoshima, JA Spudich, E Reisler, Subtilisin cleavage of actin inhibits in vitro siding movement of actin filaments over myosin. J Cell Biol 111, 465–470 (1990).
(
10.1083/jcb.111.2.465
) / J Cell Biol / Subtilisin cleavage of actin inhibits in vitro siding movement of actin filaments over myosin by Schwyter DH (1990) -
E Prochniewicz, T Yanagida, Inhibition of sliding movement of F-actin by crosslinking emphasizes the role of actin structure in the mechanism of motility. J Mol Biol 216, 761–772 (1990).
(
10.1016/0022-2836(90)90397-5
) / J Mol Biol / Inhibition of sliding movement of F-actin by crosslinking emphasizes the role of actin structure in the mechanism of motility by Prochniewicz E (1990) -
J Frank, et al., SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields. J Struct Biol 116, 190–199 (1996).
(
10.1006/jsbi.1996.0030
) / J Struct Biol / SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields by Frank J (1996) -
SJ Ludtke, PR Baldwin, W Chiu, EMAN: Semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128, 82–97 (1999).
(
10.1006/jsbi.1999.4174
) / J Struct Biol / EMAN: Semiautomated software for high-resolution single-particle reconstructions by Ludtke SJ (1999) -
JB Heymann, DM Belnap, Bsoft: Image processing and molecular modeling for electron microscopy. J Struct Biol 157, 3–18 (2007).
(
10.1016/j.jsb.2006.06.006
) / J Struct Biol / Bsoft: Image processing and molecular modeling for electron microscopy by Heymann JB (2007) -
EF Pettersen, et al., UCSF Chimera—a visualization system for exploratory research and analysis. J Comput Chem 25, 1605–1612 (2004).
(
10.1002/jcc.20084
) / J Comput Chem / UCSF Chimera—a visualization system for exploratory research and analysis by Pettersen EF (2004) -
W Kabsch, C Sander, Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577–2637 (1983).
(
10.1002/bip.360221211
) / Biopolymers / Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features by Kabsch W (1983) -
AT Brunger, et al., Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54, 905–921 (1998).
(
10.1107/S0907444998003254
) / Acta Crystallogr D Biol Crystallogr / Crystallography & NMR system: A new software suite for macromolecular structure determination by Brunger AT (1998)
Dates
Type | When |
---|---|
Created | 13 years, 8 months ago (Dec. 8, 2011, 8:38 p.m.) |
Deposited | 3 years, 2 months ago (June 7, 2022, 4:17 a.m.) |
Indexed | 1 day, 16 hours ago (Aug. 30, 2025, 12:54 p.m.) |
Issued | 13 years, 8 months ago (Dec. 7, 2011) |
Published | 13 years, 8 months ago (Dec. 7, 2011) |
Published Online | 13 years, 8 months ago (Dec. 7, 2011) |
Published Print | 13 years, 8 months ago (Dec. 20, 2011) |
@article{Galkin_2011, title={Remodeling of actin filaments by ADF/cofilin proteins}, volume={108}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.1110109108}, DOI={10.1073/pnas.1110109108}, number={51}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Galkin, Vitold E. and Orlova, Albina and Kudryashov, Dmitri S. and Solodukhin, Alexander and Reisler, Emil and Schröder, Gunnar F. and Egelman, Edward H.}, year={2011}, month=dec, pages={20568–20572} }