Abstract
The structure of the protein-translocating channel SecYEβ from Pyrococcus furiosus at 3.1-Å resolution suggests a mechanism for chaperoning transmembrane regions of a protein substrate during its lateral delivery into the lipid bilayer. Cytoplasmic segments of SecY orient the C-terminal α-helical region of another molecule, suggesting a general binding mode and a promiscuous guiding surface capable of accommodating diverse nascent chains at the exit of the ribosomal tunnel. To accommodate this putative nascent chain mimic, the cytoplasmic vestibule widens, and a lateral exit portal is opened throughout its entire length for partition of transmembrane helical segments to the lipid bilayer. In this primed channel, the central plug still occludes the pore while the lateral gate is opened, enabling topological arbitration during early protein insertion. In vivo, a 15 amino acid truncation of the cytoplasmic C-terminal helix of SecY fails to rescue a secY -deficient strain, supporting the essential role of this helix as suggested from the structure.
References
40
Referenced
154
-
SH White, G von Heijne, The machinery of membrane protein assembly. Curr Opin Struct Biol 14, 397–404 (2004).
(
10.1016/j.sbi.2004.07.003
) / Curr Opin Struct Biol / The machinery of membrane protein assembly by White SH (2004) -
L Brundage, JP Hendrick, E Schiebel, AJ Driessen, W Wickner, The purified E. coli integral membrane protein SecY/E is sufficient for reconstitution of SecA-dependent precursor protein translocation. Cell 62, 649–657 (1990).
(
10.1016/0092-8674(90)90111-Q
) / Cell / The purified E. coli integral membrane protein SecY/E is sufficient for reconstitution of SecA-dependent precursor protein translocation by Brundage L (1990) -
TH Meyer, et al., The bacterial SecY/E translocation complex forms channel-like structures similar to those of the eukaryotic Sec61p complex. J Mol Biol 285, 1789–1800 (1999).
(
10.1006/jmbi.1998.2413
) / J Mol Biol / The bacterial SecY/E translocation complex forms channel-like structures similar to those of the eukaryotic Sec61p complex by Meyer TH (1999) -
PF Egea, RM Stroud, P Walter, Targeting proteins to membranes: Structure of the signal recognition particle. Curr Opin Struct Biol 15, 213–220 (2005).
(
10.1016/j.sbi.2005.03.007
) / Curr Opin Struct Biol / Targeting proteins to membranes: Structure of the signal recognition particle by Egea PF (2005) -
SL Rusch, DA Kendall, Interactions that drive Sec-dependent bacterial protein transport. Biochemistry 46, 9665–9673 (2007).
(
10.1021/bi7010064
) / Biochemistry / Interactions that drive Sec-dependent bacterial protein transport by Rusch SL (2007) -
M van der Laan, N Nouwen, AJ Driessen, SecYEG proteoliposomes catalyze the Deltaphi-dependent membrane insertion of FtsQ. J Biol Chem 279, 1659–1664 (2004).
(
10.1074/jbc.M306527200
) / J Biol Chem / SecYEG proteoliposomes catalyze the Deltaphi-dependent membrane insertion of FtsQ by van der Laan M (2004) -
B Van den Berg, et al., X-ray structure of a protein-conducting channel. Nature 427, 36–44 (2004).
(
10.1038/nature02218
) / Nature / X-ray structure of a protein-conducting channel by Van den Berg B (2004) -
T Tsukazaki, et al., Conformational transition of Sec machinery inferred from bacterial SecYE structures. Nature 455, 988–991 (2008).
(
10.1038/nature07421
) / Nature / Conformational transition of Sec machinery inferred from bacterial SecYE structures by Tsukazaki T (2008) -
AR Osborne, TA Rapoport, Protein translocation is mediated by oligomers of the SecY complex with one SecY copy forming the channel. Cell 129, 97–110 (2007).
(
10.1016/j.cell.2007.02.036
) / Cell / Protein translocation is mediated by oligomers of the SecY complex with one SecY copy forming the channel by Osborne AR (2007) -
J Zimmer, Y Nam, TA Rapoport, Structure of a complex of the ATPase SecA and the protein-translocation channel. Nature 455, 936–943 (2008).
(
10.1038/nature07335
) / Nature / Structure of a complex of the ATPase SecA and the protein-translocation channel by Zimmer J (2008) -
KJ Erlandson, et al., A role for the two-helix finger of the SecA ATPase in protein translocation. Nature 455, 984–987 (2008).
(
10.1038/nature07439
) / Nature / A role for the two-helix finger of the SecA ATPase in protein translocation by Erlandson KJ (2008) - T Becker, et al. Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome (Science, New York, 2009). / Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome by Becker T (2009)
-
LN Kinch, MH Saier, NV Grishin, Sec61β—a component of the archaeal protein secretory system. Trends Biochem Sci 27, 170–171 (2002).
(
10.1016/S0968-0004(01)02055-2
) / Trends Biochem Sci / Sec61β—a component of the archaeal protein secretory system by Kinch LN (2002) -
K Plath, W Mothes, BM Wilkinson, CJ Stirling, TA Rapoport, Signal sequence recognition in posttranslational protein transport across the yeast ER membrane. Cell 94, 795–807 (1998).
(
10.1016/S0092-8674(00)81738-9
) / Cell / Signal sequence recognition in posttranslational protein transport across the yeast ER membrane by Plath K (1998) -
W Li, et al., The plug domain of the SecY protein stabilizes the closed state of the translocation channel and maintains a membrane seal. Mol Cell 26, 511–521 (2007).
(
10.1016/j.molcel.2007.05.002
) / Mol Cell / The plug domain of the SecY protein stabilizes the closed state of the translocation channel and maintains a membrane seal by Li W (2007) -
SM Saparov, et al., Determining the conductance of the SecY protein translocation channel for small molecules. Mol Cell 26, 501–509 (2007).
(
10.1016/j.molcel.2007.03.022
) / Mol Cell / Determining the conductance of the SecY protein translocation channel for small molecules by Saparov SM (2007) -
T Junne, T Schwede, V Goder, M Spiess, The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Mol Biol Cell 17, 4063–4068 (2006).
(
10.1091/mbc.e06-03-0200
) / Mol Biol Cell / The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability by Junne T (2006) -
Z Cheng, Y Jiang, EC Mandon, R Gilmore, Identification of cytoplasmic residues of Sec61p involved in ribosome binding and cotranslational translocation. J Cell Biol 168, 67–77 (2005).
(
10.1083/jcb.200408188
) / J Cell Biol / Identification of cytoplasmic residues of Sec61p involved in ribosome binding and cotranslational translocation by Cheng Z (2005) -
JF Ménétret, et al., Ribosome binding of a single copy of the SecY complex: Implications for protein translocation. Mol Cell 28, 1083–1092 (2007).
(
10.1016/j.molcel.2007.10.034
) / Mol Cell / Ribosome binding of a single copy of the SecY complex: Implications for protein translocation by Ménétret JF (2007) -
J Gumbart, LG Trabuco, E Schreiner, E Villa, K Schulten, Regulation of the protein-conducting channel by a bound ribosome. Structure 17, 1453–1464 (2009).
(
10.1016/j.str.2009.09.010
) / Structure / Regulation of the protein-conducting channel by a bound ribosome by Gumbart J (2009) -
AN Bondar, C del Val, JA Freites, DJ Tobias, SH White, Dynamics of SecY translocons with translocation-defective mutations. Structure 18, 847–857 (2010).
(
10.1016/j.str.2010.04.010
) / Structure / Dynamics of SecY translocons with translocation-defective mutations by Bondar AN (2010) -
DJ du Plessis, G Berrelkamp, N Nouwen, AJ Driessen, The lateral gate of SecYEG opens during protein translocation. J Biol Chem 284, 15805–15814 (2009).
(
10.1074/jbc.M901855200
) / J Biol Chem / The lateral gate of SecYEG opens during protein translocation by du Plessis DJ (2009) -
CA Woolhead, PJ McCormick, AE Johnson, Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins. Cell 116, 725–736 (2004).
(
10.1016/S0092-8674(04)00169-2
) / Cell / Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins by Woolhead CA (2004) -
S Bhushan, et al., α-helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel. Nat Struct Mol Biol 17, 313–317 (2010).
(
10.1038/nsmb.1756
) / Nat Struct Mol Biol / α-helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel by Bhushan S (2010) -
T Hessa, et al., Recognition of transmembrane helices by the endoplasmic reticulum translocon. Nature 433, 377–381 (2005).
(
10.1038/nature03216
) / Nature / Recognition of transmembrane helices by the endoplasmic reticulum translocon by Hessa T (2005) -
T Hessa, et al., Molecular code for transmembrane-helix recognition by the Sec61 translocon. Nature 450, 1026–1030 (2007).
(
10.1038/nature06387
) / Nature / Molecular code for transmembrane-helix recognition by the Sec61 translocon by Hessa T (2007) -
M Higy, T Junne, M Spiess, Topogenesis of membrane proteins at the endoplasmic reticulum. Biochemistry 43, 12716–12722 (2004).
(
10.1021/bi048368m
) / Biochemistry / Topogenesis of membrane proteins at the endoplasmic reticulum by Higy M (2004) -
M Higy, S Gander, M Spiess, Probing the environment of signal-anchor sequences during topogenesis in the endoplasmic reticulum. Biochemistry 44, 2039–2047 (2005).
(
10.1021/bi047976z
) / Biochemistry / Probing the environment of signal-anchor sequences during topogenesis in the endoplasmic reticulum by Higy M (2005) -
B Martoglio, B Dobberstein, Protein insertion into the membrane of the endoplasmic reticulum: The architecture of the translocation site. Cold Spring Harb Symp Quant Biol 60, 41–45 (1995).
(
10.1101/SQB.1995.060.01.007
) / Cold Spring Harb Symp Quant Biol / Protein insertion into the membrane of the endoplasmic reticulum: The architecture of the translocation site by Martoglio B (1995) -
B Martoglio, MW Hofmann, J Brunner, B Dobberstein, The protein-conducting channel in the membrane of the endoplasmic reticulum is open laterally toward the lipid bilayer. Cell 81, 207–214 (1995).
(
10.1016/0092-8674(95)90330-5
) / Cell / The protein-conducting channel in the membrane of the endoplasmic reticulum is open laterally toward the lipid bilayer by Martoglio B (1995) -
J Gumbart, K Schulten, Molecular dynamics studies of the archaeal translocon. Biophys J 90, 2356–2367 (2006).
(
10.1529/biophysj.105.075291
) / Biophys J / Molecular dynamics studies of the archaeal translocon by Gumbart J (2006) -
J Gumbart, K Schulten, Structural determinants of lateral gate opening in the protein translocon. Biochemistry 46, 11147–11157 (2007).
(
10.1021/bi700835d
) / Biochemistry / Structural determinants of lateral gate opening in the protein translocon by Gumbart J (2007) -
J Gumbart, K Schulten, The roles of pore ring and plug in the SecY protein-conducting channel. J Gen Physiol 132, 709–719 (2008).
(
10.1085/jgp.200810062
) / J Gen Physiol / The roles of pore ring and plug in the SecY protein-conducting channel by Gumbart J (2008) -
V Goder, M Spiess, Molecular mechanism of signal sequence orientation in the endoplasmic reticulum. EMBO J 22, 3645–3653 (2003).
(
10.1093/emboj/cdg361
) / EMBO J / Molecular mechanism of signal sequence orientation in the endoplasmic reticulum by Goder V (2003) -
V Goder, T Junne, M Spiess, Sec61p contributes to signal sequence orientation according to the positive-inside rule. Mol Biol Cell 15, 1470–1478 (2004).
(
10.1091/mbc.e03-08-0599
) / Mol Biol Cell / Sec61p contributes to signal sequence orientation according to the positive-inside rule by Goder V (2004) -
T Junne, T Schwede, V Goder, M Spiess, Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology. J Biol Chem 282, 33201–33209 (2007).
(
10.1074/jbc.M707219200
) / J Biol Chem / Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology by Junne T (2007) -
H Sadlish, D Pitonzo, AE Johnson, WR Skach, Sequential triage of transmembrane segments by Sec61α during biogenesis of a native multispanning membrane protein. Nat Struct Mol Biol 12, 870–878 (2005).
(
10.1038/nsmb994
) / Nat Struct Mol Biol / Sequential triage of transmembrane segments by Sec61α during biogenesis of a native multispanning membrane protein by Sadlish H (2005) -
CJ Daniel, B Conti, AE Johnson, WR Skach, Control of translocation through the Sec61 translocon by nascent polypeptide structure within the ribosome. J Biol Chem 283, 20864–20873 (2008).
(
10.1074/jbc.M803517200
) / J Biol Chem / Control of translocation through the Sec61 translocon by nascent polypeptide structure within the ribosome by Daniel CJ (2008) -
PF Egea, J Napetschnig, P Walter, RM Stroud, Structures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus. PLoS ONE 3, e3528 (2008).
(
10.1371/journal.pone.0003528
) / PLoS ONE / Structures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus by Egea PF (2008) -
PF Egea, et al., Structures of the signal recognition particle receptor from the archaeon Pyrococcus furiosus: Implications for the targeting step at the membrane. PLoS ONE 3, e3619 (2008).
(
10.1371/journal.pone.0003619
) / PLoS ONE / Structures of the signal recognition particle receptor from the archaeon Pyrococcus furiosus: Implications for the targeting step at the membrane by Egea PF (2008)
Dates
Type | When |
---|---|
Created | 14 years, 11 months ago (Sept. 21, 2010, 12:37 a.m.) |
Deposited | 3 years, 2 months ago (June 7, 2022, 3:04 a.m.) |
Indexed | 1 month, 3 weeks ago (July 2, 2025, 2:34 p.m.) |
Issued | 14 years, 11 months ago (Sept. 20, 2010) |
Published | 14 years, 11 months ago (Sept. 20, 2010) |
Published Online | 14 years, 11 months ago (Sept. 20, 2010) |
Published Print | 14 years, 10 months ago (Oct. 5, 2010) |
@article{Egea_2010, title={Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes}, volume={107}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.1012556107}, DOI={10.1073/pnas.1012556107}, number={40}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Egea, Pascal F. and Stroud, Robert M.}, year={2010}, month=sep, pages={17182–17187} }