DOI: 10.1073/pnas.0505266102. A genome-wide transcriptional analysis using <i>Arabidopsis thaliana</i> Affymetrix gene chips determined plant responses to phosphate deprivation

A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation

10.1073/pnas.0505266102

Crossref journal-article

Proceedings of the National Academy of Sciences

Proceedings of the National Academy of Sciences (341)

Abstract

Phosphorus, one of the essential elements for plants, is often a limiting nutrient because of its low availability and mobility in soils. Significant changes in plant morphology and biochemical processes are associated with phosphate (Pi) deficiency. However, the molecular bases of these responses to Pi deficiency are not thoroughly elucidated. Therefore, a comprehensive survey of global gene expression in response to Pi deprivation was done by using Arabidopsis thaliana whole genome Affymetrix gene chip (ATH1) to quantify the spatio-temporal variations in transcript abundance of 22,810 genes. The analysis revealed a coordinated induction and suppression of 612 and 254 Pi-responsive genes, respectively. The functional classification of some of these genes indicated their involvement in various metabolic pathways, ion transport, signal transduction, transcriptional regulation, and other processes related to growth and development. This study is a detailed analysis of Pi starvation-induced changes in gene expression of the entire genome of Arabidopsis correlated with biochemical processes. The results not only enhance our knowledge about molecular processes associated with Pi deficiency, but also facilitate the identification of key molecular determinants for improving Pi use by crop species.

Bibliography

Misson, J., Raghothama, K. G., Jain, A., Jouhet, J., Block, M. A., Bligny, R., Ortet, P., Creff, A., Somerville, S., Rolland, N., Doumas, P., Nacry, P., Herrerra-Estrella, L., Nussaume, L., & Thibaud, M.-C. (2005). A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proceedings of the National Academy of Sciences, 102(33), 11934â11939.

Authors 15

Julie Misson (first)
Kashchandra G. Raghothama (additional)
Ajay Jain (additional)
Juliette Jouhet (additional)
Maryse A. Block (additional)
Richard Bligny (additional)
Philippe Ortet (additional)
Audrey Creff (additional)
Shauna Somerville (additional)
Norbert Rolland (additional)
Patrick Doumas (additional)
Philippe Nacry (additional)
Luis Herrerra-Estrella (additional)
Laurent Nussaume (additional)
Marie-Christine Thibaud (additional)

References 37 Referenced 762

10.1146/annurev.arplant.50.1.665
10.1046/j.1365-313X.2002.01356.x
Baldwin, J. C., Karthikeyan, A. S. & Raghothama, K. G. (2002) Plant Physiol. 125, 728-737. / Plant Physiol. (2002)
10.1046/j.1365-313X.1994.6050673.x
10.1101/gad.204401
10.1111/j.1365-313X.2004.02061.x
10.1104/pp.103.020941
10.1104/pp.102.016881
10.1046/j.1365-3040.2003.01074.x
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10.1104/pp.020007
10.1007/s11103-004-1965-5
10.1105/tpc.13.1.113
Bechthold, N., Elis, J. & Pelletier, G. (1993) C. R. Acad. Sci. Paris 316, 1194-1199. / C. R. Acad. Sci. Paris (1993)
10.1016/S0021-9258(18)64849-5
10.1016/S0014-5793(03)00477-0
10.1104/pp.47.5.649
Aubert S. Bligny R. & Douce R. (1996) in Current Topics in Plant Physiology eds. Shashar-Hill Y. & Pfeffer P. (Am. Soc. Plant Physiol. Rockville MD) pp. 109-154.
Westoby M. Leishman M. & Lord J. (1997) in Plant Life Histories: Ecology Phylogeny and Evolution eds. Silvertown J. W. Franco M. & Harper J. L. (Cambridge Univ. Press Cambridge U.K.) pp. 143-162.
10.1104/pp.012161
Plaxton W. C. & Carswell M. C. (1999) in Plant Responses to Environmental Stresses: From Phytohormones to Genome Organization ed. Lerner H. R. (Dekker New York) pp. 349-372.
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10.1016/j.tplants.2004.08.009
10.1104/pp.103.032235

Dates

Type	When
Created	20 years ago (Aug. 5, 2005, 8:33 p.m.)
Deposited	3 years, 4 months ago (April 12, 2022, 10:27 a.m.)
Indexed	4 days, 1 hour ago (Aug. 29, 2025, 6:49 a.m.)
Issued	20 years ago (Aug. 5, 2005)
Published	20 years ago (Aug. 5, 2005)
Published Online	20 years ago (Aug. 5, 2005)
Published Print	20 years ago (Aug. 16, 2005)

Funders 0

None

BibTeX

@article{Misson_2005, title={A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation}, volume={102}, ISSN={1091-6490}, url={http://dx.doi.org/10.1073/pnas.0505266102}, DOI={10.1073/pnas.0505266102}, number={33}, journal={Proceedings of the National Academy of Sciences}, publisher={Proceedings of the National Academy of Sciences}, author={Misson, Julie and Raghothama, Kashchandra G. and Jain, Ajay and Jouhet, Juliette and Block, Maryse A. and Bligny, Richard and Ortet, Philippe and Creff, Audrey and Somerville, Shauna and Rolland, Norbert and Doumas, Patrick and Nacry, Philippe and Herrerra-Estrella, Luis and Nussaume, Laurent and Thibaud, Marie-Christine}, year={2005}, month=aug, pages={11934–11939} }

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