Abstract
A linear-scaling method to carry out semiempirical quantum mechanical calculations for large systems has been developed based on the density matrix version of the divide-and-conquer approach. The method has been tested and demonstrated to be accurate and efficient. With this implementation, semiempirical quantum mechanical calculations are made possible for large molecules over 9000 atoms on a typical workstation. For biological macromolecules, solvent effects are included with a dielectric continuum model.
References
50
Referenced
156
{'key': '2024020622201414800_r1'}
10.1021/j100044a042
/ J. Phys. Chem. (1995)10.1021/ja00145a025
/ J. Am. Chem. Soc. (1995){'key': '2024020622201414800_r4', 'first-page': '438', 'volume': '66', 'year': '1991', 'journal-title': 'Phys. Rev. Lett.'}
/ Phys. Rev. Lett. (1991)10.1103/PhysRevA.44.7823
/ Phys. Rev. A (1991)10.1103/PhysRevLett.69.3547
/ Phys. Rev. Lett. (1992)10.1103/PhysRevB.47.10891
/ Phys. Rev. B (1993)10.1103/PhysRevB.47.9973
/ Phys. Rev. B (1993)10.1103/PhysRevB.48.14646
/ Phys. Rev. B (1993){'key': '2024020622201414800_r10', 'first-page': '3898', 'volume': '49', 'year': '1993', 'journal-title': 'Phys. Rev. B'}
/ Phys. Rev. B (1993){'key': '2024020622201414800_r11', 'first-page': '122', 'volume': '73', 'year': '1994', 'journal-title': 'Phys. Rev. B'}
/ Phys. Rev. B (1994)10.1016/S0009-2614(95)01235-4
/ Chem. Phys. Lett. (1995)10.1016/0009-2614(95)00665-Q
/ Chem. Phys. Lett. (1995)10.1063/1.471517
/ J. Chem. Phys. (1996)10.1016/0009-2614(94)01128-1
/ Chem. Phys. Lett. (1994)10.1126/science.271.5245.51
/ Science (1996){'key': '2024020622201414800_r17'}
10.1016/S0040-4020(01)86235-9
/ Tetrahedron (1988){'key': '2024020622201414800_r19'}
10.1063/1.470549
/ J. Chem. Phys. (1995){'key': '2024020622201414800_r21'}
10.1007/BF00128336
/ J. Comput.-aided Mol. Design (1990)10.1063/1.1740588
/ J. Chem. Phys. (1955)10.1021/ja00079a025
/ J. Am. Chem. Soc. (1993){'key': '2024020622201414800_r25', 'first-page': '371', 'volume': '29', 'year': '1995', 'journal-title': 'J. Quantum Chem.'}
/ J. Quantum Chem. (1995)10.1063/1.468776
/ J. Chem. Phys. (1995)10.1016/0097-8485(78)80005-9
/ Comput. Chem. (1978)10.1016/0009-2614(85)80574-1
/ Chem. Phys. Lett. (1985){'key': '2024020622201414800_r29'}
{'key': '2024020622201414800_r30', 'first-page': '799', 'volume': '2', 'year': '1993', 'journal-title': 'Perkin Trans.'}
/ Perkin Trans. (1993)10.1063/1.470048
/ J. Chem. Phys. (1995)10.1063/1.469990
/ J. Chem. Phys. (1995){'key': '2024020622201414800_r33'}
{'key': '2024020622201414800_r34'}
10.1002/jcc.540100208
/ J. Comput. Chem. (1989)10.1002/jcc.540100209
/ J. Comput. Chem. (1989)10.1021/bi00167a006
/ Biochemistry (1994)10.1006/jmbi.1993.1143
/ J. Mol. Biol. (1993)10.1107/S0567740875002415
/ Acta Crystallograph. B (1975){'key': '2024020622201414800_r40', 'first-page': '7815', 'volume': '91', 'year': '1994', 'journal-title': 'Proc. Natl. Acad. Sci.'}
/ Proc. Natl. Acad. Sci. (1994)10.1126/science.2548279
/ Science (1989)10.1063/1.465608
/ J. Chem. Phys. (1993){'key': '2024020622201414800_r43', 'first-page': '250', 'volume': '50', 'year': '1994', 'journal-title': 'Acta Crystallograph. B'}
/ Acta Crystallograph. B (1994)10.1002/j.1460-2075.1990.tb07409.x
/ EMBO J. (1990)10.1126/science.1678899
/ Science (1991)10.1021/bi00320a014
/ Biochemistry (1984)10.1126/science.8351519
/ Science (1993)10.1126/science.7624794
/ Science (1995)10.1126/science.265.5174.909
/ Science (1994)10.1016/0009-2614(94)01128-1
/ Chem. Phys. Lett. (1994)
@article{Lee_1996, title={Linear-scaling semiempirical quantum calculations for macromolecules}, volume={105}, ISSN={1089-7690}, url={http://dx.doi.org/10.1063/1.472136}, DOI={10.1063/1.472136}, number={7}, journal={The Journal of Chemical Physics}, publisher={AIP Publishing}, author={Lee, Tai-Sung and York, Darrin M. and Yang, Weitao}, year={1996}, month=aug, pages={2744–2750} }