10.1046/j.1469-8137.2002.00419.x
Crossref journal-article
Wiley
New Phytologist (311)
Abstract

SummaryPhytochrome signal transduction has in the past often been viewed as being a nonspatially separated linear chain of events. However, through a combination of molecular, genetic and cell biological approaches, it is becoming increasingly evident that phytochrome signalling constitutes a highly ordered multidimensional network of events. The discovery that some phytochromes and signalling intermediates show light‐dependent nucleo‐cytoplasmic partitioning has not only led to the suggestion that early signalling events take place in the nucleus, but also that subcellular localization patterns most probably represent an important signalling control point. Moreover, detailed characterization of signalling intermediates has demonstrated that various branches of the signalling network are spatially separated and take place in different cellular compartments including the nucleus, cytosol, and chloroplasts. In addition, proteasome‐mediated degradation of signalling intermediates most probably act in concert with subcellular partitioning events as an integrated checkpoint. An emerging view from this is that phytochrome signalling is separated into several subcellular organelles and that these are interconnected in order to execute accurate responses to changes in the light environment. By integrating the available data, both at the cellular and subcellular level, we should be able to construct a solid foundation for further dissection of phytochrome signal transduction in plants. Contents Summary 553 I. Introduction 554 II. Nucleus vs cytoplasm 556 III. The nucleus 562 IV. The cytoplasm 571 V. Interactions with other signalling pathways 577 VI. Conclusions and the future 582 Acknowledgements 583 References 583

Bibliography

Møller, S. G., Ingles, P. J., & Whitelam, G. C. (2002). The cell biology of phytochrome signalling. New Phytologist, 154(3), 553–590. Portico.

Authors 3
  1. Simon G. Møller (first)
  2. Patricia J. Ingles (additional)
  3. Garry C. Whitelam (additional)
References 295 Referenced 62
  1. 10.1073/pnas.95.22.12854
  2. 10.1073/pnas.91.1.326
  3. 10.1046/j.1365-313X.1995.08010087.x
  4. 10.1046/j.1365-313X.1996.10061103.x
  5. 10.1046/j.1365-313X.1997.11030421.x
  6. 10.1016/S1097-2765(00)80094-5
  7. 10.1016/S0092-8674(01)00445-7
  8. 10.1016/S1097-2765(00)80022-2
  9. 10.1105/tpc.6.5.613
  10. 10.1002/pro.5560070521
  11. 10.1016/0092-8674(94)90034-5
  12. 10.1002/bies.950181109
  13. 10.1016/S0378-1119(98)00433-8
  14. 10.1104/pp.114.3.779
  15. 10.1016/S1360-1385(01)01960-4
  16. 10.1101/gad.915001
  17. 10.1046/j.1365-313X.1996.10061155.x
  18. 10.1046/j.1365-313x.1999.00590.x
  19. 10.1104/pp.121.1.245
  20. 10.1073/pnas.96.9.5322
  21. 10.1104/pp.120.4.1025
  22. 10.1101/gad.14.10.1269 / Genes and Development / PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction by Bolle C (2000)
  23. 10.1002/j.1460-2075.1993.tb05881.x
  24. 10.1126/science.132.3435.1223
  25. 10.1073/pnas.38.8.662
  26. 10.1016/0092-8674(94)90236-4
  27. 10.1007/BF01279182
  28. 10.1105/tpc.10.6.1009
  29. 10.1105/tpc.12.4.547
  30. 10.1016/S1369-5266(00)00100-X
  31. 10.1046/j.1365-3040.1997.d01-113.x
  32. 10.1073/pnas.95.23.13358
  33. 10.1016/S0092-8674(00)80082-3
  34. 10.1046/j.1365-313X.1998.00180.x
  35. 10.1038/44176
  36. {'key': 'e_1_2_8_37_1', 'first-page': '21', 'article-title': 'The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening', 'volume': '45', 'author': 'Chory J', 'year': '1991', 'journal-title': 'Symposium Society of Experimental Biology'} / Symposium Society of Experimental Biology / The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening by Chory J (1991)
  37. {'key': 'e_1_2_8_38_1', 'first-page': '257', 'article-title': 'Genes controlling Arabidopsis photomorphogenesis', 'volume': '60', 'author': 'Chory J', 'year': '1994', 'journal-title': 'Biochemistry Society Symposium'} / Biochemistry Society Symposium / Genes controlling Arabidopsis photomorphogenesis by Chory J (1994)
  38. 10.1016/0092-8674(89)90950-1
  39. 10.1007/BF00043870
  40. 10.1046/j.1365-313X.1999.00360.x
  41. 10.1104/pp.111.3.671
  42. 10.1177/22.11.1039
  43. 10.1104/pp.124.2.553
  44. 10.1104/pp.124.4.1728
  45. 10.1146/annurev.bi.65.070196.004101
  46. 10.1105/TPC.000561
  47. 10.1104/pp.106.2.813
  48. 10.1016/S0079-6107(99)00010-3
  49. 10.1101/gad.5.7.1172
  50. 10.1016/S0168-9525(00)01982-X
  51. 10.1016/0092-8674(92)90555-Q
  52. 10.1006/scdb.1999.0287
  53. 10.1101/gad.205401
  54. 10.1046/j.1365-313X.1996.10061127.x
  55. 10.1105/tpc.10.9.1479
  56. 10.1104/pp.119.3.909
  57. 10.1016/S0092-8674(00)80115-4
  58. 10.1101/gad.197201
  59. {'key': 'e_1_2_8_60_1', 'first-page': '583', 'article-title': 'Sucrose control of phytochrome A signalling in Arabidopsis', 'volume': '9', 'author': 'Dijkwel PP', 'year': '1997', 'journal-title': 'Plant Cell'} / Plant Cell / Sucrose control of phytochrome A signalling in Arabidopsis by Dijkwel PP (1997)
  60. 10.1016/S0092-8674(00)80346-3
  61. 10.1016/S0092-8674(00)80458-4
  62. 10.1111/j.1432-1033.1995.200_c.x
  63. 10.1073/pnas.92.22.10237
  64. 10.1016/S1369-5266(00)00169-2
  65. {'key': 'e_1_2_8_66_1', 'first-page': '2377', 'article-title': 'HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction', 'volume': '14', 'author': 'Fairchild CD', 'year': '2000', 'journal-title': 'Genes and Development'} / Genes and Development / HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction by Fairchild CD (2000)
  66. 10.1016/S0960-9822(99)80078-5
  67. 10.1104/pp.124.1.39
  68. 10.1126/science.284.5419.1539
  69. 10.1093/emboj/18.17.4679
  70. 10.1146/annurev.pp.44.060193.003153
  71. 10.1046/j.1365-313X.1998.00030.x
  72. 10.1007/PL00008123
  73. 10.1105/tpc.10.6.889
  74. 10.1101/gad.905201
  75. 10.1046/j.1365-313x.2000.00730.x
  76. 10.1016/S0092-8674(00)81603-7
  77. 10.1104/pp.112.3.901
  78. 10.1073/pnas.96.5.1941
  79. 10.1101/gad.13.13.1678
  80. 10.1016/S0968-0004(00)01544-9
  81. 10.1073/pnas.95.12.7197
  82. 10.1016/S1369-5266(98)80112-X
  83. 10.1007/BF00393195
  84. 10.1104/pp.118.2.341
  85. 10.1126/science.291.5503.487
  86. 10.1126/science.279.5355.1360
  87. 10.1007/BF00410211
  88. 10.1073/pnas.96.10.5832
  89. 10.1104/pp.104.4.1311
  90. 10.1046/j.1365-313X.1997.12051079.x
  91. 10.1016/1011-1344(95)07236-5
  92. 10.1093/emboj/19.18.4997
  93. 10.1016/S0065-2571(96)00009-X
  94. 10.1126/science.288.5475.2360
  95. 10.1023/A:1006991419464
  96. 10.1104/pp.010559
  97. 10.1016/S0968-0004(96)10054-2
  98. 10.1146/annurev.biochem.67.1.425
  99. 10.1105/TPC.010070
  100. 10.1126/science.274.5288.790
  101. 10.1105/tpc.12.7.1063
  102. 10.1046/j.1365-313X.1995.7020211.x
  103. HoeckerU QuailPH.2001.The phytochrome A‐specific signalling intermediate SPA1 interacts directly with COP1 a constitutive repressor of light signalling inArabidopsis.Journal of Biological Chemistry276:38173–38178. (10.1074/jbc.M103140200)
  104. 10.1126/science.284.5413.496
  105. 10.1105/tpc.10.1.19
  106. 10.1016/S0968-0004(98)01217-1
  107. 10.1101/gad.14.15.1958 / Genes and Development / FIN219, an auxin‐regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development by Hsieh HL (2000)
  108. 10.1101/gad.13.15.2017
  109. 10.1104/pp.121.4.1059
  110. 10.1038/386663a0
  111. 10.1046/j.1365-313x.2000.00810.x
  112. 10.1073/pnas.170283997
  113. 10.1104/pp.121.3.813
  114. 10.1038/35059117
  115. 10.1016/S0021-9258(18)83690-0
  116. 10.1073/pnas.93.17.9292
  117. {'key': 'e_1_2_8_118_1', 'first-page': '5', 'article-title': 'Hexokinase as a sugar sensor in higher plants', 'volume': '9', 'author': 'Jang JC', 'year': '1997', 'journal-title': 'Plant Cell'} / Plant Cell / Hexokinase as a sugar sensor in higher plants by Jang JC (1997)
  118. 10.1038/35068589
  119. 10.1104/pp.116.2.455
  120. 10.1111/j.1432-1033.1988.tb14390.x
  121. 10.1016/S0021-9258(18)90727-1
  122. 10.1104/pp.105.1.141
  123. 10.1146/annurev.genet.32.1.227
  124. 10.1104/pp.115.2.693
  125. 10.1016/S0092-8674(01)00370-1
  126. 10.1016/S1369-5266(00)00101-1
  127. 10.1126/science.276.5313.753
  128. 10.1126/science.273.5280.1409
  129. 10.1128/jb.179.12.3914-3921.1997
  130. 10.1007/978-94-011-1884-2
  131. 10.1111/j.1751-1097.1989.tb04113.x
  132. 10.1073/pnas.96.22.12350
  133. 10.1073/pnas.94.22.11786
  134. 10.1046/j.1365-313x.2000.00729.x
  135. 10.1046/j.1365-313X.1996.09040441.x
  136. {'key': 'e_1_2_8_137_1', 'first-page': '1445', 'article-title': 'Light quality‐dependent nuclear import of the plant photoreceptors phytochrome A and B', 'volume': '11', 'author': 'Kircher S', 'year': '1999', 'journal-title': 'Plant Cell'} / Plant Cell / Light quality‐dependent nuclear import of the plant photoreceptors phytochrome A and B by Kircher S (1999)
  137. 10.1105/tpc.10.10.1677
  138. 10.1016/S0044-328X(80)80208-X
  139. KramlM.1994.Light direction and polarisation. In:Photomorphogenesis in Plants 2nd edn. (edsR EKendrick G H MKronenberg).163–186.
  140. 10.1046/j.1365-313x.1998.00278.x
  141. 10.1073/pnas.94.25.14168
  142. 10.1111/j.1365-313X.2000.00898.x
  143. 10.1105/tpc.10.11.1779
  144. 10.1006/jmbi.1998.2315
  145. 10.1007/BF00020457
  146. 10.1126/science.280.5363.547
  147. 10.1021/bi970708z
  148. 10.1110/ps.8.5.1032
  149. 10.1073/pnas.97.13.7278
  150. 10.1016/S0092-8674(00)81095-8
  151. 10.1104/pp.122.1.75
  152. 10.1016/S0960-9822(98)70193-9
  153. 10.1016/S0092-8674(00)80357-8
  154. 10.1074/jbc.273.11.6183
  155. 10.1126/science.272.5260.398
  156. {'key': 'e_1_2_8_157_1', 'first-page': '1071', 'article-title': 'Growth and development of the axr1 mutants of Arabidopsis', 'volume': '2', 'author': 'Lincoln C', 'year': '1990', 'journal-title': 'Plant Cell'} / Plant Cell / Growth and development of the axr1 mutants of Arabidopsis by Lincoln C (1990)
  157. {'key': 'e_1_2_8_158_1', 'first-page': '1293', 'article-title': 'ELF3 Encodes a Circadian Clock‐Regulated Nuclear Protein That Functions in an Arabidopsis PHYB Signal Transduction Pathway', 'volume': '13', 'author': 'Liu XL', 'year': '2001', 'journal-title': 'Plant Cell'} / Plant Cell / ELF3 Encodes a Circadian Clock‐Regulated Nuclear Protein That Functions in an Arabidopsis PHYB Signal Transduction Pathway by Liu XL (2001)
  158. 10.1104/pp.118.3.803
  159. 10.1073/pnas.96.20.11364
  160. 10.1074/jbc.271.51.32886
  161. 10.1126/science.1059780
  162. 10.1073/pnas.72.3.799
  163. 10.1104/pp.53.3.343
  164. 10.1126/science.288.5467.859
  165. 10.1038/35041583
  166. 10.1128/MCB.20.2.429-440.2000
  167. 10.1046/j.1365-3040.1997.d01-117.x
  168. 10.1073/pnas.92.10.4239
  169. 10.1016/S0092-8674(00)00113-6
  170. 10.1046/j.1365-313X.1993.04010019.x
  171. 10.1083/jcb.103.6.2541
  172. 10.1002/j.1460-2075.1991.tb07940.x
  173. 10.1021/bi00468a011
  174. 10.1105/tpc.6.10.1391
  175. 10.1038/35047079
  176. 10.1146/annurev.cellbio.16.1.591
  177. 10.1007/BF00285451
  178. 10.1111/j.1749-6632.2002.tb04791.x
  179. 10.1073/pnas.98.4.2053
  180. MohrH.1994.Coaction between pigment systems. In:Photomorphogenesis in Plants 2nd edn (edsKendrick RE Kronenburg GHM).353–376. (10.1007/978-94-011-1884-2_14)
  181. 10.1006/jmbi.1999.2992
  182. 10.1101/gad.850101
  183. 10.1104/pp.122.3.621
  184. 10.1007/BF00402984
  185. 10.1038/35056591
  186. 10.1093/emboj/17.1.61
  187. {'key': 'e_1_2_8_188_1', 'first-page': '1141', 'article-title': 'Non‐specific association of phytochrome to nuclei during isolation from dark‐grown pea Pisum sativum cultivar Alaska plumulus', 'volume': '29', 'author': 'Nagatani A', 'year': '1988', 'journal-title': 'Plant Cell Physiology'} / Plant Cell Physiology / Non‐specific association of phytochrome to nuclei during isolation from dark‐grown pea Pisum sativum cultivar Alaska plumulus by Nagatani A (1988)
  188. 10.1104/pp.123.2.563
  189. 10.1242/jcs.114.3.475 / Journal of Cell Science / Intracellular trafficking of photoreceptors during light‐induced signal transduction in plants by Nagy F (2001)
  190. 10.1111/j.1365-313X.2001.00957.x
  191. 10.1104/pp.118.1.27
  192. 10.1101/gad.14.3.257 / Genes and Development / Light: an indicator of time and place by Neff MM (2000)
  193. 10.1073/pnas.96.26.15316
  194. 10.1016/S0092-8674(00)80842-9
  195. 10.1101/gad.12.19.3059
  196. 10.1016/0092-8674(93)90272-R
  197. 10.1016/S0092-8674(00)81636-0
  198. 10.1038/23500
  199. 10.1111/j.1751-1097.1989.tb04101.x
  200. 10.1007/BF00016140
  201. 10.1007/BF00392267
  202. 10.1105/tpc.13.7.1639
  203. 10.1046/j.1365-313x.1998.00290.x
  204. 10.1038/35013076
  205. 10.1073/pnas.98.4.2047
  206. 10.1105/tpc.13.4.829
  207. 10.1101/gad.11.22.2983
  208. 10.1104/pp.122.4.1161
  209. 10.1046/j.1365-313x.2000.00724.x
  210. 10.1006/scdb.2000.0200
  211. 10.1104/pp.126.3.1291
  212. 10.1104/pp.110.1.155
  213. 10.1016/S0168-9525(98)01473-5
  214. 10.1101/gad.11.23.3194
  215. 10.1091/mbc.12.2.383
  216. 10.1016/0092-8674(94)90577-0
  217. 10.1104/pp.127.1.295
  218. 10.1146/annurev.biochem.70.1.503
  219. 10.1016/S0021-9258(19)74354-3
  220. 10.1046/j.1365-313x.1998.00322.x
  221. 10.1073/pnas.96.26.15342
  222. 10.1105/tpc.13.5.1127
  223. 10.1046/j.1365-313X.1997.12051163.x
  224. 10.1098/rstb.1998.0294
  225. 10.1006/scdb.2000.0199
  226. 10.1126/science.7732376
  227. 10.1038/newbio245189a0
  228. 10.1104/pp.118.4.1369
  229. {'key': 'e_1_2_8_230_1', 'first-page': '147', 'article-title': 'Mutations in the gene for the red/far‐red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development', 'volume': '5', 'author': 'Reed JW', 'year': '1993', 'journal-title': 'Plant Cell'} / Plant Cell / Mutations in the gene for the red/far‐red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development by Reed JW (1993)
  230. 10.1126/science.283.5407.1541
  231. 10.1016/S0959-4388(00)00212-9
  232. 10.1104/pp.102.4.1179
  233. 10.1046/j.1365-313X.1996.10050859.x
  234. 10.1007/BF00040726
  235. 10.1126/science.1061233
  236. 10.1111/j.1751-1097.1992.tb02241.x
  237. 10.1101/gad.13.24.3259
  238. 10.1126/science.202030
  239. 10.1006/scdb.2000.0203
  240. 10.1126/science.1059776
  241. 10.1034/j.1399-3054.2001.1120215.x
  242. 10.1101/gad.3.11.1745
  243. 10.1073/pnas.93.15.8129
  244. 10.1105/tpc.10.2.155
  245. 10.1073/pnas.94.6.2756
  246. 10.1046/j.1365-3040.1997.d01-104.x
  247. 10.1046/j.1365-313x.1998.00307.x
  248. SohMS KimYM HanSJ SongPS.2000. REP1 a basic helix‐loop‐helix protein is required for a branch pathway of phytochrome A signalling inArabidopsis.Plant Cell12:2061–2074. (10.2307/3871105)
  249. 10.1016/S0092-8674(00)80841-7
  250. 10.1007/BF00392353
  251. 10.1007/BF00398678
  252. 10.1105/tpc.12.12.2485
  253. 10.1074/jbc.274.38.27231
  254. 10.3109/09687689609160570
  255. 10.1242/dev.126.19.4235
  256. 10.1101/gad.6.12a.2364
  257. 10.1105/tpc.11.9.1609
  258. 10.1016/0092-8674(93)90459-4
  259. 10.1016/S0092-8674(00)81094-6
  260. 10.1007/BF00193224
  261. 10.1128/MMBR.63.2.479-506.1999
  262. 10.1073/pnas.161300998
  263. 10.1104/pp.119.1.143
  264. 10.1242/dev.126.4.711
  265. {'key': 'e_1_2_8_266_1', 'first-page': '1963', 'article-title': 'Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements', 'volume': '9', 'author': 'Ulmasov T', 'year': '1997', 'journal-title': 'Plant Cell'} / Plant Cell / Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements by Ulmasov T (1997)
  266. 10.1006/scdb.2000.0206
  267. 10.1111/j.1365-313X.2000.00936.x
  268. 10.1105/tpc.9.5.731
  269. 10.2307/3869308
  270. 10.1126/science.1063630
  271. 10.1105/tpc.4.12.1507
  272. 10.1104/pp.112.3.871
  273. 10.1111/j.1751-1097.1998.tb02495.x
  274. 10.1016/S0168-9525(98)01670-9
  275. 10.1105/tpc.6.5.629
  276. 10.1016/S0960-9822(07)00372-7
  277. 10.1111/j.1469-8137.1973.tb02010.x
  278. 10.1046/j.1365-3040.1997.d01-100.x
  279. {'key': 'e_1_2_8_280_1', 'first-page': '757', 'article-title': 'Phytochrome A null mutants of Arabidopsis display a wild‐type phenotype in white light', 'volume': '5', 'author': 'Whitelam GC', 'year': '1993', 'journal-title': 'Plant Cell'} / Plant Cell / Phytochrome A null mutants of Arabidopsis display a wild‐type phenotype in white light by Whitelam GC (1993)
  280. 10.1098/rstb.1998.0300
  281. {'key': 'e_1_2_8_282_1', 'first-page': '46', 'article-title': 'Rough endoplasmic reticulum: isolation and phytochrome content', 'volume': '53', 'author': 'Williamson FA', 'year': '1974', 'journal-title': 'Plant Physiology'} / Plant Physiology / Rough endoplasmic reticulum: isolation and phytochrome content by Williamson FA (1974)
  282. 10.1016/S0021-9258(18)67206-0
  283. 10.1104/pp.91.2.709
  284. 10.1083/jcb.145.3.437
  285. 10.1105/tpc.10.12.2115
  286. 10.1105/tpc.13.2.399
  287. 10.1105/tpc.10.7.1083
  288. 10.1016/S0092-8674(00)00184-7
  289. 10.1104/pp.123.1.235
  290. 10.1073/pnas.95.23.13976
  291. 10.1126/science.277.5331.1505
  292. 10.1046/j.1365-313X.1996.10040691.x
  293. 10.1073/pnas.95.17.10294
  294. 10.1073/pnas.230433797
  295. 10.1074/jbc.274.24.17017
Dates
Type When
Created 22 years, 5 months ago (March 12, 2003, 10:37 a.m.)
Deposited 1 year, 11 months ago (Sept. 1, 2023, 2:49 a.m.)
Indexed 3 weeks ago (Aug. 7, 2025, 5:16 p.m.)
Issued 23 years, 2 months ago (June 1, 2002)
Published 23 years, 2 months ago (June 1, 2002)
Published Online 23 years, 2 months ago (June 6, 2002)
Published Print 23 years, 2 months ago (June 1, 2002)
Funders 0

None

@article{M_ller_2002, title={The cell biology of phytochrome signalling}, volume={154}, ISSN={1469-8137}, url={http://dx.doi.org/10.1046/j.1469-8137.2002.00419.x}, DOI={10.1046/j.1469-8137.2002.00419.x}, number={3}, journal={New Phytologist}, publisher={Wiley}, author={Møller, Simon G. and Ingles, Patricia J. and Whitelam, Garry C.}, year={2002}, month=jun, pages={553–590} }