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Liu, Y., Kahn, R. A., & Prestegard, J. H. (2010). Dynamic structure of membrane-anchored Arf•GTP. Nature Structural & Molecular Biology, 17(7), 876–881.

Authors 3
  1. Yizhou Liu (first)
  2. Richard A Kahn (additional)
  3. James H Prestegard (additional)
References 50 Referenced 124
  1. Kahn, R.A. Toward a model for Arf GTPases as regulators of traffic at the Golgi. FEBS Lett. 583, 3872–3879 (2009). (10.1016/j.febslet.2009.10.066) / FEBS Lett. by RA Kahn (2009)
  2. Luo, R., Ha, V.L., Hayashi, R. & Randazzo, P.A. Arf GAP2 is positively regulated by coatomer and cargo. Cell. Signal. 21, 1169–1179 (2009). (10.1016/j.cellsig.2009.03.006) / Cell. Signal. by R Luo (2009)
  3. Pucadyil, T.J. & Schmid, S.L. Conserved functions of membrane active GTPases in coated vesicle formation. Science 325, 1217–1220 (2009). (10.1126/science.1171004) / Science by TJ Pucadyil (2009)
  4. D'Souza-Schorey, C. & Chavrier, P. ARF proteins: roles in membrane traffic and beyond. Nat. Rev. Mol. Cell Biol. 7, 347–358 (2006). (10.1038/nrm1910) / Nat. Rev. Mol. Cell Biol. by C D'Souza-Schorey (2006)
  5. Casanova, J.E. Regulation of arf activation: the sec7 family of guanine nucleotide exchange factors. Traffic 8, 1476–1485 (2007). (10.1111/j.1600-0854.2007.00634.x) / Traffic by JE Casanova (2007)
  6. Gillingham, A.K. & Munro, S. The small G proteins of the arf family and their regulators. Annu. Rev. Cell Dev. Biol. 23, 579–611 (2007). (10.1146/annurev.cellbio.23.090506.123209) / Annu. Rev. Cell Dev. Biol. by AK Gillingham (2007)
  7. Inoue, H. & Randazzo, P.A. Arf GAPs and their interacting proteins. Traffic 8, 1465–1475 (2007). (10.1111/j.1600-0854.2007.00624.x) / Traffic by H Inoue (2007)
  8. Renault, L., Guibert, B. & Cherfils, J. Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor. Nature 426, 525–530 (2003). (10.1038/nature02197) / Nature by L Renault (2003)
  9. Shiba, T. et al. Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport. Nat. Struct. Biol. 10, 386–393 (2003). (10.1038/nsb920) / Nat. Struct. Biol. by T Shiba (2003)
  10. Menetrey, J. et al. Structural basis for ARF1-mediated recruitment of ARHGAP21 to Golgi membranes. EMBO J. 26, 1953–1962 (2007). (10.1038/sj.emboj.7601634) / EMBO J. by J Menetrey (2007)
  11. Amor, J.C., Harrison, D.H., Kahn, R.A. & Ringe, D. Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 372, 704–708 (1994). (10.1038/372704a0) / Nature by JC Amor (1994)
  12. Goldberg, J. Structural basis for activation of ARF GTPase: mechanisms of guanine nucleotide exchange and GTP-myristoyl switching. Cell 95, 237–248 (1998). (10.1016/S0092-8674(00)81754-7) / Cell by J Goldberg (1998)
  13. Liu, Y., Kahn, R.A. & Prestegard, J.H. Structure and membrane interaction of myristoylated ARF1. Structure 17, 79–87 (2009). (10.1016/j.str.2008.10.020) / Structure by Y Liu (2009)
  14. Amor, J.C. et al. Structures of yeast ARF2 and ARL1: distinct roles for the N terminus in the structure and function of ARF family GTPases. J. Biol. Chem. 276, 42477–42484 (2001). (10.1074/jbc.M106660200) / J. Biol. Chem. by JC Amor (2001)
  15. Liu, Y. & Prestegard, J.H. Direct measurement of dipole-dipole/CSA cross-correlated relaxation by a constant-time experiment. J. Magn. Reson. 193, 23–31 (2008). (10.1016/j.jmr.2008.03.013) / J. Magn. Reson. by Y Liu (2008)
  16. Losonczi, J.A. & Prestegard, J.H. Nuclear magnetic resonance characterization of the myristoylated, N-terminal fragment of ADP-ribosylation factor 1 in a magnetically oriented membrane array. Biochemistry 37, 706–716 (1998). (10.1021/bi9717791) / Biochemistry by JA Losonczi (1998)
  17. Losonczi, J.A., Tian, F. & Prestegard, J.H. Nuclear magnetic resonance studies of the N-terminal fragment of adenosine diphosphate ribosylation factor 1 in micelles and bicelles: influence of N-myristoylation. Biochemistry 39, 3804–3816 (2000). (10.1021/bi9923050) / Biochemistry by JA Losonczi (2000)
  18. Vold, R.R. & Prosser, R.S. Magnetically oriented phospholipid bilayered micelles for structural studies of polypeptides. Does the ideal bicelle exist? J. Magn. Reson. 113, 267–271 (1996). (10.1006/jmrb.1996.0187) / J. Magn. Reson. by RR Vold (1996)
  19. Lee, D. et al. Bilayer in small bicelles revealed by lipid-protein interactions using NMR spectroscopy. J. Am. Chem. Soc. 130, 13822–13823 (2008). (10.1021/ja803686p) / J. Am. Chem. Soc. by D Lee (2008)
  20. Fischer, M.W.F., Losonczi, J.A., Weaver, J.L. & Prestegard, J.H. Domain orientation and dynamics in multidomain proteins from residual dipolar couplings. Biochemistry 38, 9013–9022 (1999). (10.1021/bi9905213) / Biochemistry by MWF Fischer (1999)
  21. Tolman, J.R. & Ruan, K. NMR residual dipolar couplings as probes of biomolecular dynamics. Chem. Rev. 106, 1720–1736 (2006). (10.1021/cr040429z) / Chem. Rev. by JR Tolman (2006)
  22. Tolman, J.R., Al-Hashimi, H.M., Kay, L.E. & Prestegard, J.H. Structural and dynamic analysis of residual dipolar coupling data for proteins. J. Am. Chem. Soc. 123, 1416–1424 (2001). (10.1021/ja002500y) / J. Am. Chem. Soc. by JR Tolman (2001)
  23. Hubbell, W.L. & Altenbach, C. Investigation of structure and dynamics in membrane-proteins using site-directed spin-labeling. Curr. Opin. Struct. Biol. 4, 566–573 (1994). (10.1016/S0959-440X(94)90219-4) / Curr. Opin. Struct. Biol. by WL Hubbell (1994)
  24. Clore, G.M., Tang, C. & Iwahara, J. Elucidating transient macromolecular interactions using paramagnetic relaxation enhancement. Curr. Opin. Struct. Biol. 17, 603–616 (2007). (10.1016/j.sbi.2007.08.013) / Curr. Opin. Struct. Biol. by GM Clore (2007)
  25. Tang, C., Iwahara, J. & Clore, G.M. Visualization of transient encounter complexes in protein-protein association. Nature 444, 383–386 (2006). (10.1038/nature05201) / Nature by C Tang (2006)
  26. Iwahara, J., Schwieters, C.D. & Clore, G.M. Ensemble approach for NMR structure refinement against 1H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule. J. Am. Chem. Soc. 126, 5879–5896 (2004). (10.1021/ja031580d) / J. Am. Chem. Soc. by J Iwahara (2004)
  27. Solomon, I. & Bloembergen, N. Nuclear magnetic interactions in the Hf molecule. J. Chem. Phys. 25, 261–266 (1956). (10.1063/1.1742867) / J. Chem. Phys. by I Solomon (1956)
  28. Bruschweiler, R. et al. Influence of rapid intramolecular motion on NMR cross-relaxation rates - a molecular-dynamics study of antamanide in solution. J. Am. Chem. Soc. 114, 2289–2302 (1992). (10.1021/ja00033a002) / J. Am. Chem. Soc. by R Bruschweiler (1992)
  29. Lipari, G. & Szabo, A. Model-free approach to the interpretation of nuclear magnetic-resonance relaxation in macromolecules. 1. Theory and range of validity. J. Am. Chem. Soc. 104, 4546–4559 (1982). (10.1021/ja00381a009) / J. Am. Chem. Soc. by G Lipari (1982)
  30. Schwieters, C.D. & Clore, G.M. Reweighted atomic densities to represent ensembles of NMR structures. J. Biomol. NMR 23, 221–225 (2002). (10.1023/A:1019875223132) / J. Biomol. NMR by CD Schwieters (2002)
  31. Ambroggio, E. et al. ArfGAP1 generates an Arf1 gradient on continuous lipid membranes displaying flat and curved regions. EMBO J. 29, 292–303 (2010). (10.1038/emboj.2009.341) / EMBO J. by E Ambroggio (2010)
  32. Prestegard, J.H. & Obrien, M.P. Membrane and vesicle fusion. Annu. Rev. Phys. Chem. 38, 383–411 (1987). (10.1146/annurev.pc.38.100187.002123) / Annu. Rev. Phys. Chem. by JH Prestegard (1987)
  33. Cevc, G. & Richardsen, H. Lipid vesicles and membrane fusion. Adv. Drug Deliv. Rev. 38, 207–232 (1999). (10.1016/S0169-409X(99)00030-7) / Adv. Drug Deliv. Rev. by G Cevc (1999)
  34. Cukierman, E., Huber, I., Rotman, M. & Cassel, D. The ARF1 GTPase-activating protein: zinc finger motif and Golgi complex localization. Science 270, 1999–2002 (1995). (10.1126/science.270.5244.1999) / Science by E Cukierman (1995)
  35. Godi, A. et al. FAPPs control Golgi-to-cell-surface membrane traffic by binding to ARF and PtdIns(4)P. Nat. Cell Biol. 6, 393–404 (2004). (10.1038/ncb1119) / Nat. Cell Biol. by A Godi (2004)
  36. D'Angelo, G. et al. Glycosphingolipid synthesis requires FAPP2 transfer of glucosylceramide. Nature 449, 62–67 (2007). (10.1038/nature06097) / Nature by G D'Angelo (2007)
  37. Baraldi, E. et al. Structure of the PH domain from Bruton's tyrosine kinase in complex with inositol 1,3,4,5-tetrakisphosphate. Structure 7, 449–460 (1999). (10.1016/S0969-2126(99)80057-4) / Structure by E Baraldi (1999)
  38. Seidel, R.D., Amor, J.C., Kahn, R.A. & Prestegard, J.H. Structural perturbations in human ADP ribosylation factor-1 accompanying the binding of phosphatidylinositides. Biochemistry 43, 15393–15403 (2004). (10.1021/bi0490385) / Biochemistry by RD Seidel (2004)
  39. Randazzo, P.A. Functional interaction of ADP-ribosylation factor 1 with phosphatidylinositol 4,5-bisphosphate. J. Biol. Chem. 272, 7688–7692 (1997). (10.1016/S0021-9258(19)67538-1) / J. Biol. Chem. by PA Randazzo (1997)
  40. Jian, X., Cavenagh, M., Gruschus, J.M., Randazzo, P.A. & Kahn, R.A. Modifications to the C-terminus of Arf1 alter cell functions and protein interactions. Traffic 11, 732–742 (2010). (10.1111/j.1600-0854.2010.01054.x) / Traffic by X Jian (2010)
  41. Cornilescu, G., Marquardt, J.L., Ottiger, M. & Bax, A. Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J. Am. Chem. Soc. 120, 6836–6837 (1998). (10.1021/ja9812610) / J. Am. Chem. Soc. by G Cornilescu (1998)
  42. Battiste, J.L. & Wagner, G. Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear Overhauser effect data. Biochemistry 39, 5355–5365 (2000). (10.1021/bi000060h) / Biochemistry by JL Battiste (2000)
  43. Liang, B., Bushweller, J.H. & Tamm, L.K. Site-directed parallel spin-labeling and paramagnetic relaxation enhancement in structure determination of membrane proteins by solution NMR spectroscopy. J. Am. Chem. Soc. 128, 4389–4397 (2006). (10.1021/ja0574825) / J. Am. Chem. Soc. by B Liang (2006)
  44. Liu, Y. & Prestegard, J.H. Measurement of one and two bond N-C couplings in large proteins by TROSY-based J-modulation experiments. J. Magn. Reson. 200, 109–118 (2009). (10.1016/j.jmr.2009.06.010) / J. Magn. Reson. by Y Liu (2009)
  45. Permi, P., Tossavainen, H. & Hellman, M. Efficient assignment of methyl resonances: enhanced sensitivity by gradient selection in a DE-MQ-(H)CC(m)Ht (m)-TOCSY experiment. J. Biomol. NMR 30, 275–282 (2004). (10.1007/s10858-004-3222-2) / J. Biomol. NMR by P Permi (2004)
  46. Yang, D., Zheng, Y., Liu, D. & Wyss, D.F. Sequence-specific assignments of methyl groups in high-molecular weight proteins. J. Am. Chem. Soc. 126, 3710–3711 (2004). (10.1021/ja039102q) / J. Am. Chem. Soc. by D Yang (2004)
  47. Cierpicki, T. & Bushweller, J.H. Charged gels as orienting media for measurement of residual dipolar couplings in soluble and integral membrane proteins. J. Am. Chem. Soc. 126, 16259–16266 (2004). (10.1021/ja046054g) / J. Am. Chem. Soc. by T Cierpicki (2004)
  48. Iwahara, J., Tang, C. & Marius Clore, G. Practical aspects of 1H transverse paramagnetic relaxation enhancement measurements on macromolecules. J. Magn. Reson. 184, 185–195 (2007). (10.1016/j.jmr.2006.10.003) / J. Magn. Reson. by J Iwahara (2007)
  49. Schwieters, C.D., Kuszewski, J.J. & Clore, G.M. Using Xplor-NIH for NMR molecular structure determination. Prog. Nucl. Magn. Reson. Spectrosc. 48, 47–62 (2006). (10.1016/j.pnmrs.2005.10.001) / Prog. Nucl. Magn. Reson. Spectrosc. by CD Schwieters (2006)
  50. Schwieters, C.D. & Clore, G.M. Internal coordinates for molecular dynamics and minimization in structure determination and refinement. J. Magn. Reson. 152, 288–302 (2001). (10.1006/jmre.2001.2413) / J. Magn. Reson. by CD Schwieters (2001)
Dates
Type When
Created 15 years, 2 months ago (July 4, 2010, 2:36 p.m.)
Deposited 2 years, 3 months ago (May 19, 2023, 12:27 a.m.)
Indexed 2 weeks ago (Aug. 21, 2025, 2:24 p.m.)
Issued 15 years, 2 months ago (July 1, 2010)
Published 15 years, 2 months ago (July 1, 2010)
Published Online 15 years, 2 months ago (July 4, 2010)
Published Print 15 years, 2 months ago (July 1, 2010)
Funders 0

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@article{Liu_2010, title={Dynamic structure of membrane-anchored Arf•GTP}, volume={17}, ISSN={1545-9985}, url={http://dx.doi.org/10.1038/nsmb.1853}, DOI={10.1038/nsmb.1853}, number={7}, journal={Nature Structural & Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Liu, Yizhou and Kahn, Richard A and Prestegard, James H}, year={2010}, month=jul, pages={876–881} }