Bibliography
Warkocki, Z., Odenwälder, P., Schmitzová, J., Platzmann, F., Stark, H., Urlaub, H., Ficner, R., Fabrizio, P., & Lührmann, R. (2009). Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components. Nature Structural & Molecular Biology, 16(12), 1237â1243.
References
43
Referenced
149
- Will, C.L. & Lührmann, R. Spliceosome structure and function. in RNA World (eds. Gesteland, R.F., Cech, T.R. & Atkins, J.F.) 369–400 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 2006).
-
Staley, J.P. & Guthrie, C. Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92, 315–326 (1998).
(
10.1016/S0092-8674(00)80925-3
) / Cell by JP Staley (1998) - Nilsen, T.W. RNA-RNA interactions in nuclear pre-mRNA splicing. in RNA Structure and Function (eds. Grundber-Manago, M., & Simons, R.W.) 279–307 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1998).
-
Nilsen, T.W. The spliceosome: the most complex macromolecular machine in the cell? Bioessays 25, 1147–1149 (2003).
(
10.1002/bies.10394
) / Bioessays by TW Nilsen (2003) -
Pyle, A.M. Translocation and unwinding mechanisms of RNA and DNA helicases. Annu. Rev. Biophys. 37, 317–336 (2008).
(
10.1146/annurev.biophys.37.032807.125908
) / Annu. Rev. Biophys. by AM Pyle (2008) -
Schwer, B. & Guthrie, C. PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome. Nature 349, 494–499 (1991).
(
10.1038/349494a0
) / Nature by B Schwer (1991) -
Teigelkamp, S., McGarvey, M., Plumpton, M. & Beggs, J.D. The splicing factor PRP2, a putative RNA helicase, interacts directly with pre-mRNA. EMBO J. 13, 888–897 (1994).
(
10.1002/j.1460-2075.1994.tb06332.x
) / EMBO J. by S Teigelkamp (1994) -
King, D.S. & Beggs, J.D. Interactions of PRP2 protein with pre-mRNA splicing complexes in Saccharomyces cerevisiae. Nucleic Acids Res. 18, 6559–6564 (1990).
(
10.1093/nar/18.22.6559
) / Nucleic Acids Res. by DS King (1990) -
Schwer, B. & Gross, C.H. Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing. EMBO J. 17, 2086–2094 (1998).
(
10.1093/emboj/17.7.2086
) / EMBO J. by B Schwer (1998) -
Kim, S.H. & Lin, R.J. Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicing. Mol. Cell. Biol. 16, 6810–6819 (1996).
(
10.1128/MCB.16.12.6810
) / Mol. Cell. Biol. by SH Kim (1996) - Fabrizio, P. et al. The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Mol. Cell (in the press).
-
Burgess, S.M. & Guthrie, C. A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates. Cell 73, 1377–1391 (1993).
(
10.1016/0092-8674(93)90363-U
) / Cell by SM Burgess (1993) -
Mefford, M.A. & Staley, J.P. Evidence that U2/U6 helix I promotes both catalytic steps of pre-mRNA splicing and rearranges in between these steps. RNA 15, 1386–1397 (2009).
(
10.1261/rna.1582609
) / RNA by MA Mefford (2009) -
Vijayraghavan, U. & Abelson, J. PRP18, a protein required for the second reaction in pre-mRNA splicing. Mol. Cell. Biol. 10, 324–332 (1990).
(
10.1128/MCB.10.1.324
) / Mol. Cell. Biol. by U Vijayraghavan (1990) -
Horowitz, D.S. & Abelson, J. Stages in the second reaction of pre-mRNA splicing: the final step is ATP independent. Genes Dev. 7, 320–329 (1993).
(
10.1101/gad.7.2.320
) / Genes Dev. by DS Horowitz (1993) - Umen, J.G. & Guthrie, C. The second catalytic step of pre-mRNA splicing. RNA 1, 869–885 (1995). / RNA by JG Umen (1995)
-
Ansari, A. & Schwer, B. SLU7 and a novel activity, SSF1, act during the PRP16-dependent step of yeast pre-mRNA splicing. EMBO J. 14, 4001–4009 (1995).
(
10.1002/j.1460-2075.1995.tb00071.x
) / EMBO J. by A Ansari (1995) - Brys, A. & Schwer, B. Requirement for SLU7 in yeast pre-mRNA splicing is dictated by the distance between the branchpoint and the 3′ splice site. RNA 2, 707–717 (1996). / RNA by A Brys (1996)
-
James, S.A., Turner, W. & Schwer, B. How Slu7 and Prp18 cooperate in the second step of yeast pre-mRNA splicing. RNA 8, 1068–1077 (2002).
(
10.1017/S1355838202022033
) / RNA by SA James (2002) -
Wahl, M.C., Will, C.L. & Lührmann, R. The spliceosome: design principles of a dynamic RNP machine. Cell 136, 701–718 (2009).
(
10.1016/j.cell.2009.02.009
) / Cell by MC Wahl (2009) -
Tseng, C.K. & Cheng, S.C. Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science 320, 1782–1784 (2008).
(
10.1126/science.1158993
) / Science by CK Tseng (2008) -
Deckert, J. et al. Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions. Mol. Cell. Biol. 26, 5528–5543 (2006).
(
10.1128/MCB.00582-06
) / Mol. Cell. Biol. by J Deckert (2006) -
Bessonov, S., Anokhina, M., Will, C.L., Urlaub, H. & Lührmann, R. Isolation of an active step I spliceosome and composition of its RNP core. Nature 452, 846–850 (2008).
(
10.1038/nature06842
) / Nature by S Bessonov (2008) -
Makarov, E.M. et al. Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome. Science 298, 2205–2208 (2002).
(
10.1126/science.1077783
) / Science by EM Makarov (2002) -
Chan, S.P., Kao, D.I., Tsai, W.Y. & Cheng, S.C. The Prp19p-associated complex in spliceosome activation. Science 302, 279–282 (2003).
(
10.1126/science.1086602
) / Science by SP Chan (2003) - Roy, J., Kim, K., Maddock, J.R., Anthony, J.G. & Woolford, J.L. Jr. The final stages of spliceosome maturation require Spp2p that can interact with the DEAH box protein Prp2p and promote step 1 of splicing. RNA 1, 375–390 (1995). / RNA by J Roy (1995)
-
Liu, Y.C., Chen, H.C., Wu, N.Y. & Cheng, S.C. A novel splicing factor, Yju2, is associated with NTC and acts after Prp2 in promoting the first catalytic reaction of pre-mRNA splicing. Mol. Cell. Biol. 27, 5403–5413 (2007).
(
10.1128/MCB.00346-07
) / Mol. Cell. Biol. by YC Liu (2007) -
Sapra, A.K., Khandelia, P. & Vijayraghavan, U. The splicing factor Prp17 interacts with the U2, U5 and U6 snRNPs and associates with the spliceosome pre- and post-catalysis. Biochem. J. 416, 365–374 (2008).
(
10.1042/BJ20081195
) / Biochem. J. by AK Sapra (2008) -
Ohi, M.D. et al. Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol. Cell. Biol. 22, 2011–2024 (2002).
(
10.1128/MCB.22.7.2011-2024.2002
) / Mol. Cell. Biol. by MD Ohi (2002) -
Burkhard, P., Stetefeld, J. & Strelkov, S.V. Coiled coils: a highly versatile protein folding motif. Trends Cell Biol. 11, 82–88 (2001).
(
10.1016/S0962-8924(00)01898-5
) / Trends Cell Biol. by P Burkhard (2001) - Farias, S.T. & Bonato, M.C. Preferred amino acids and thermostability. Genet. Mol. Res. 2, 383–393 (2003). / Genet. Mol. Res. by ST Farias (2003)
-
Farias, S.T., van der Linden, M.G., Rego, T.G., Araujo, D.A. & Bonato, M.C. Thermo-search: lifestyle and thermostability analysis. In Silico Biol. 4, 377–380 (2004).
(
10.3233/ISB-00140
) / In Silico Biol. by ST Farias (2004) -
Sander, B., Golas, M.M. & Stark, H. Corrim-based alignment for improved speed in single-particle image processing. J. Struct. Biol. 143, 219–228 (2003).
(
10.1016/j.jsb.2003.08.001
) / J. Struct. Biol. by B Sander (2003) - van Heel, M. & Frank, J. Use of multivariate statistics in analysing the images of biological macromolecules. Ultramicroscopy 6, 187–194 (1981). / Ultramicroscopy by M van Heel (1981)
-
Chiu, Y.F. et al. Cwc25 is a novel splicing factor required after Prp2 and Yju2 to facilitate the first catalytic reaction. Mol. Cell. Biol. 29, 5671–5678 (2009).
(
10.1128/MCB.00773-09
) / Mol. Cell. Biol. by YF Chiu (2009) -
Gozani, O., Potashkin, J. & Reed, R. A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site. Mol. Cell. Biol. 18, 4752–4760 (1998).
(
10.1128/MCB.18.8.4752
) / Mol. Cell. Biol. by O Gozani (1998) -
Smith, D.J., Query, C.C. & Konarska, M.M. trans-splicing to spliceosomal U2 snRNA suggests disruption of branch site-U2 pairing during pre-mRNA splicing. Mol. Cell 26, 883–890 (2007).
(
10.1016/j.molcel.2007.05.020
) / Mol. Cell by DJ Smith (2007) -
Yean, S.L. & Lin, R.J. U4 small nuclear RNA dissociates from a yeast spliceosome and does not participate in the subsequent splicing reaction. Mol. Cell. Biol. 11, 5571–5577 (1991).
(
10.1128/MCB.11.11.5571
) / Mol. Cell. Biol. by SL Yean (1991) -
Fabrizio, P., McPheeters, D.S. & Abelson, J. In vitro assembly of yeast U6 snRNP: a functional assay. Genes Dev. 3, 2137–2150 (1989).
(
10.1101/gad.3.12b.2137
) / Genes Dev. by P Fabrizio (1989) -
Kastner, B. et al. GraFix: sample preparation for single-particle electron cryomicroscopy. Nat. Methods 5, 53–55 (2008).
(
10.1038/nmeth1139
) / Nat. Methods by B Kastner (2008) -
Shevchenko, A., Wilm, M., Vorm, O. & Mann, M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68, 850–858 (1996).
(
10.1021/ac950914h
) / Anal. Chem. by A Shevchenko (1996) -
Hu, Q. et al. The Orbitrap: a new mass spectrometer. J. Mass Spectrom. 40, 430–443 (2005).
(
10.1002/jms.856
) / J. Mass Spectrom. by Q Hu (2005) -
Studier, F.W. Protein production by auto-induction in high-density shaking cultures. Protein Expr. Purif. 41, 207–234 (2005).
(
10.1016/j.pep.2005.01.016
) / Protein Expr. Purif. by FW Studier (2005)
Dates
Type | When |
---|---|
Created | 15 years, 9 months ago (Nov. 23, 2009, 5:10 a.m.) |
Deposited | 6 months, 1 week ago (Feb. 13, 2025, 6:01 a.m.) |
Indexed | 1 month, 3 weeks ago (July 4, 2025, 12:03 p.m.) |
Issued | 15 years, 9 months ago (Nov. 22, 2009) |
Published | 15 years, 9 months ago (Nov. 22, 2009) |
Published Online | 15 years, 9 months ago (Nov. 22, 2009) |
Published Print | 15 years, 8 months ago (Dec. 1, 2009) |
@article{Warkocki_2009, title={Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components}, volume={16}, ISSN={1545-9985}, url={http://dx.doi.org/10.1038/nsmb.1729}, DOI={10.1038/nsmb.1729}, number={12}, journal={Nature Structural & Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Warkocki, Zbigniew and Odenwälder, Peter and Schmitzová, Jana and Platzmann, Florian and Stark, Holger and Urlaub, Henning and Ficner, Ralf and Fabrizio, Patrizia and Lührmann, Reinhard}, year={2009}, month=nov, pages={1237–1243} }