DOI: 10.1038/nsmb.1572. The pathway of hepatitis C virus mRNA recruitment to the human ribosome

The pathway of hepatitis C virus mRNA recruitment to the human ribosome

10.1038/nsmb.1572

Crossref journal-article

Springer Science and Business Media LLC

Nature Structural & Molecular Biology (297)

Bibliography

Fraser, C. S., Hershey, J. W. B., & Doudna, J. A. (2009). The pathway of hepatitis C virus mRNA recruitment to the human ribosome. Nature Structural & Molecular Biology, 16(4), 397â404.

Authors 3

Christopher S Fraser (first)
John W B Hershey (additional)
Jennifer A Doudna (additional)

References 37 Referenced 53

Pestova, T.V., Lorsch, J.R. & Hellen, C.U.T. The mechanism of translation initiation in eukaryotes. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 87–128 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007). / Translational Control in Biology and Medicine by TV Pestova (2007)
Fraser, C.S. & Doudna, J.A. Quantitative studies of ribosome conformational dynamics. Q. Rev. Biophys. 40, 163–189 (2007). (10.1017/S0033583507004647) / Q. Rev. Biophys. by CS Fraser (2007)
Doudna, J.A. & Sarnow, P. Translation initiation by viral internal ribosome entry sites. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 129–153 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007). / Translational Control in Biology and Medicine by JA Doudna (2007)
Elroy-Stein, O. & Merrick, W.C. translation initiation via cellular internal ribosome entry sites. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 155–172 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007). / Translational Control in Biology and Medicine by O Elroy-Stein (2007)
Pisarev, A.V., Shirokikh, N.E. & Hellen, C.U. Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites. C. R. Biol. 328, 589–605 (2005). (10.1016/j.crvi.2005.02.004) / C. R. Biol. by AV Pisarev (2005)
Fraser, C.S. & Doudna, J.A. Structural and mechanistic insights into hepatitis C viral translation initiation. Nat. Rev. Microbiol. 5, 29–38 (2007). (10.1038/nrmicro1558) / Nat. Rev. Microbiol. by CS Fraser (2007)
Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J. & Hellen, C.U. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev. 12, 67–83 (1998). (10.1101/gad.12.1.67) / Genes Dev. by TV Pestova (1998)
Trachsel, H., Erni, B., Schreier, M.H. & Staehelin, T. Initiation of mammalian protein synthesis. II. The assembly of the initiation complex with purified initiation factors. J. Mol. Biol. 116, 755–767 (1977). (10.1016/0022-2836(77)90269-8) / J. Mol. Biol. by H Trachsel (1977)
Benne, R. & Hershey, J.W. The mechanism of action of protein synthesis initiation factors from rabbit reticulocytes. J. Biol. Chem. 253, 3078–3087 (1978). (10.1016/S0021-9258(17)40805-2) / J. Biol. Chem. by R Benne (1978)
Ji, H., Fraser, C.S., Yu, Y., Leary, J. & Doudna, J.A. Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA. Proc. Natl. Acad. Sci. USA 101, 16990–16995 (2004). (10.1073/pnas.0407402101) / Proc. Natl. Acad. Sci. USA by H Ji (2004)
Spahn, C.M. et al. Structure of the 80S ribosome from Saccharomyces cerevisiae–tRNA-ribosome and subunit-subunit interactions. Cell 107, 373–386 (2001). (10.1016/S0092-8674(01)00539-6) / Cell by CM Spahn (2001)
Taylor, D.J., Frank, J. & Kinzy, T.G. Structure and function of the eukaryotic ribosome and elongation fractors. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) pp. 59–85 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007). / Translational Control in Biology and Medicine by DJ Taylor (2007)
Spahn, C.M. et al. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit. Science 291, 1959–1962 (2001). (10.1126/science.1058409) / Science by CM Spahn (2001)
Passmore, L.A. et al. The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. Mol. Cell 26, 41–50 (2007). (10.1016/j.molcel.2007.03.018) / Mol. Cell by LA Passmore (2007)
Kolupaeva, V.G., Pestova, T.V. & Hellen, C.U. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J. Virol. 74, 6242–6250 (2000). (10.1128/JVI.74.14.6242-6250.2000) / J. Virol. by VG Kolupaeva (2000)
Otto, G.A. & Puglisi, J.D. The pathway of HCV IRES-mediated translation initiation. Cell 119, 369–380 (2004). (10.1016/j.cell.2004.09.038) / Cell by GA Otto (2004)
Spahn, C.M. et al. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118, 465–475 (2004). (10.1016/j.cell.2004.08.001) / Cell by CM Spahn (2004)
Unbehaun, A., Borukhov, S.I., Hellen, C.U. & Pestova, T.V. Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. Genes Dev. 18, 3078–3093 (2004). (10.1101/gad.1255704) / Genes Dev. by A Unbehaun (2004)
Fraser, C.S., Berry, K.E., Hershey, J.W. & Doudna, J.A. eIF3j is located in the decoding center of the human 40S ribosomal subunit. Mol. Cell 26, 811–819 (2007). (10.1016/j.molcel.2007.05.019) / Mol. Cell by CS Fraser (2007)
Pisarev, A.V., Hellen, C.U. & Pestova, T.V. Recycling of eukaryotic posttermination ribosomal complexes. Cell 131, 286–299 (2007). (10.1016/j.cell.2007.08.041) / Cell by AV Pisarev (2007)
Hartz, D., McPheeters, D.S., Traut, R. & Gold, L. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164, 419–425 (1988). (10.1016/S0076-6879(88)64058-4) / Methods Enzymol. by D Hartz (1988)
Anthony, D.D. & Merrick, W.C. Analysis of 40 S and 80 S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition. J. Biol. Chem. 267, 1554–1562 (1992). (10.1016/S0021-9258(18)45981-9) / J. Biol. Chem. by DD Anthony (1992)
Kozak, M. Primer extension analysis of eukaryotic ribosome-mRNA complexes. Nucleic Acids Res. 26, 4853–4859 (1998). (10.1093/nar/26.21.4853) / Nucleic Acids Res. by M Kozak (1998)
Kieft, J.S., Zhou, K., Jubin, R. & Doudna, J.A. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 7, 194–206 (2001). (10.1017/S1355838201001790) / RNA by JS Kieft (2001)
ElAntak, L., Tzakos, A.G., Locker, N. & Lukavsky, P.J. Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit. J. Biol. Chem. 282, 8165–8174 (2007). (10.1074/jbc.M610860200) / J. Biol. Chem. by L ElAntak (2007)
Joseph, S. & Noller, H.F. Directed hydroxyl radical probing using iron(II) tethered to RNA. Methods Enzymol. 318, 175–190 (2000). (10.1016/S0076-6879(00)18052-8) / Methods Enzymol. by S Joseph (2000)
Reynolds, J.E. et al. Unique features of internal initiation of hepatitis C virus RNA translation. EMBO J. 14, 6010–6020 (1995). (10.1002/j.1460-2075.1995.tb00289.x) / EMBO J. by JE Reynolds (1995)
Jivotovskaya, A.V., Valasek, L., Hinnebusch, A.G. & Nielsen, K.H. Eukaryotic translation initiation factor 3 (eIF3) and eIF2 can promote mRNA binding to 40S subunits independently of eIF4G in yeast. Mol. Cell. Biol. 26, 1355–1372 (2006). (10.1128/MCB.26.4.1355-1372.2006) / Mol. Cell. Biol. by AV Jivotovskaya (2006)
Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U. & Pestova, T.V. Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J. 27, 1609–1621 (2008). (10.1038/emboj.2008.90) / EMBO J. by AV Pisarev (2008)
Pestova, T.V. & Kolupaeva, V.G. The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev. 16, 2906–2922 (2002). (10.1101/gad.1020902) / Genes Dev. by TV Pestova (2002)
Fraser, C.S. et al. The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro. J. Biol. Chem. 279, 8946–8956 (2004). (10.1074/jbc.M312745200) / J. Biol. Chem. by CS Fraser (2004)
Pestova, T.V. & Hellen, C.U. Preparation and activity of synthetic unmodified mammalian tRNAi(Met) in initiation of translation in vitro. RNA 7, 1496–1505 (2001). (10.1017/S135583820101038X) / RNA by TV Pestova (2001)
Spanggord, R.J., Siu, F., Ke, A. & Doudna, J.A. RNA-mediated interaction between the peptide-binding and GTPase domains of the signal recognition particle. Nat. Struct. Mol. Biol. 12, 1116–1122 (2005). (10.1038/nsmb1025) / Nat. Struct. Mol. Biol. by RJ Spanggord (2005)
Kieft, J.S. et al. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J. Mol. Biol. 292, 513–529 (1999). (10.1006/jmbi.1999.3095) / J. Mol. Biol. by JS Kieft (1999)
Lomakin, I.B., Kolupaeva, V.G., Marintchev, A., Wagner, G. & Pestova, T.V. Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. Genes Dev. 17, 2786–2797 (2003). (10.1101/gad.1141803) / Genes Dev. by IB Lomakin (2003)
Culver, G.M. & Noller, H.F. Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol. 318, 461–475 (2000). (10.1016/S0076-6879(00)18070-X) / Methods Enzymol. by GM Culver (2000)
Pisarev, A.V., Unbehaun, A., Hellen, C.U. & Pestova, T.V. Assembly and analysis of eukaryotic translation initiation complexes. Methods Enzymol. 430, 147–177 (2007). (10.1016/S0076-6879(07)30007-4) / Methods Enzymol. by AV Pisarev (2007)

Dates

Type	When
Created	16 years, 5 months ago (March 15, 2009, 2:57 p.m.)
Deposited	2 years, 3 months ago (May 19, 2023, 12:24 a.m.)
Indexed	9 months ago (Nov. 19, 2024, 11:15 a.m.)
Issued	16 years, 5 months ago (March 15, 2009)
Published	16 years, 5 months ago (March 15, 2009)
Published Online	16 years, 5 months ago (March 15, 2009)
Published Print	16 years, 4 months ago (April 1, 2009)

Funders 0

None

BibTeX

@article{Fraser_2009, title={The pathway of hepatitis C virus mRNA recruitment to the human ribosome}, volume={16}, ISSN={1545-9985}, url={http://dx.doi.org/10.1038/nsmb.1572}, DOI={10.1038/nsmb.1572}, number={4}, journal={Nature Structural & Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Fraser, Christopher S and Hershey, John W B and Doudna, Jennifer A}, year={2009}, month=mar, pages={397–404} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2024,
        11,
        19
      ]
    ],
    "date-time": "2024-11-19T16:15:30Z",
    "timestamp": 1732032930920
  },
  "reference-count": 37,
  "publisher": "Springer Science and Business Media LLC",
  "issue": "4",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2009,
            3,
            15
          ]
        ],
        "date-time": "2009-03-15T00:00:00Z",
        "timestamp": 1237075200000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "http://www.springer.com/tdm"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2009,
        4
      ]
    ]
  },
  "DOI": "10.1038/nsmb.1572",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2009,
        3,
        15
      ]
    ],
    "date-time": "2009-03-15T18:57:13Z",
    "timestamp": 1237143433000
  },
  "page": "397-404",
  "source": "Crossref",
  "is-referenced-by-count": 53,
  "title": "The pathway of hepatitis C virus mRNA recruitment to the human ribosome",
  "prefix": "10.1038",
  "volume": "16",
  "author": [
    {
      "given": "Christopher S",
      "family": "Fraser",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "John W B",
      "family": "Hershey",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Jennifer A",
      "family": "Doudna",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "297",
  "published-online": {
    "date-parts": [
      [
        2009,
        3,
        15
      ]
    ]
  },
  "reference": [
    {
      "key": "BFnsmb1572_CR1",
      "first-page": "87",
      "volume-title": "Translational Control in Biology and Medicine",
      "author": "TV Pestova",
      "year": "2007",
      "unstructured": "Pestova, T.V., Lorsch, J.R. & Hellen, C.U.T. The mechanism of translation initiation in eukaryotes. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 87\u2013128 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007)."
    },
    {
      "key": "BFnsmb1572_CR2",
      "doi-asserted-by": "publisher",
      "first-page": "163",
      "DOI": "10.1017/S0033583507004647",
      "volume": "40",
      "author": "CS Fraser",
      "year": "2007",
      "unstructured": "Fraser, C.S. & Doudna, J.A. Quantitative studies of ribosome conformational dynamics. Q. Rev. Biophys. 40, 163\u2013189 (2007).",
      "journal-title": "Q. Rev. Biophys."
    },
    {
      "key": "BFnsmb1572_CR3",
      "first-page": "129",
      "volume-title": "Translational Control in Biology and Medicine",
      "author": "JA Doudna",
      "year": "2007",
      "unstructured": "Doudna, J.A. & Sarnow, P. Translation initiation by viral internal ribosome entry sites. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 129\u2013153 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007)."
    },
    {
      "key": "BFnsmb1572_CR4",
      "first-page": "155",
      "volume-title": "Translational Control in Biology and Medicine",
      "author": "O Elroy-Stein",
      "year": "2007",
      "unstructured": "Elroy-Stein, O. & Merrick, W.C. translation initiation via cellular internal ribosome entry sites. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) 155\u2013172 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007)."
    },
    {
      "key": "BFnsmb1572_CR5",
      "doi-asserted-by": "publisher",
      "first-page": "589",
      "DOI": "10.1016/j.crvi.2005.02.004",
      "volume": "328",
      "author": "AV Pisarev",
      "year": "2005",
      "unstructured": "Pisarev, A.V., Shirokikh, N.E. & Hellen, C.U. Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites. C. R. Biol. 328, 589\u2013605 (2005).",
      "journal-title": "C. R. Biol."
    },
    {
      "key": "BFnsmb1572_CR6",
      "doi-asserted-by": "publisher",
      "first-page": "29",
      "DOI": "10.1038/nrmicro1558",
      "volume": "5",
      "author": "CS Fraser",
      "year": "2007",
      "unstructured": "Fraser, C.S. & Doudna, J.A. Structural and mechanistic insights into hepatitis C viral translation initiation. Nat. Rev. Microbiol. 5, 29\u201338 (2007).",
      "journal-title": "Nat. Rev. Microbiol."
    },
    {
      "key": "BFnsmb1572_CR7",
      "doi-asserted-by": "publisher",
      "first-page": "67",
      "DOI": "10.1101/gad.12.1.67",
      "volume": "12",
      "author": "TV Pestova",
      "year": "1998",
      "unstructured": "Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J. & Hellen, C.U. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev. 12, 67\u201383 (1998).",
      "journal-title": "Genes Dev."
    },
    {
      "key": "BFnsmb1572_CR8",
      "doi-asserted-by": "publisher",
      "first-page": "755",
      "DOI": "10.1016/0022-2836(77)90269-8",
      "volume": "116",
      "author": "H Trachsel",
      "year": "1977",
      "unstructured": "Trachsel, H., Erni, B., Schreier, M.H. & Staehelin, T. Initiation of mammalian protein synthesis. II. The assembly of the initiation complex with purified initiation factors. J. Mol. Biol. 116, 755\u2013767 (1977).",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "BFnsmb1572_CR9",
      "doi-asserted-by": "crossref",
      "first-page": "3078",
      "DOI": "10.1016/S0021-9258(17)40805-2",
      "volume": "253",
      "author": "R Benne",
      "year": "1978",
      "unstructured": "Benne, R. & Hershey, J.W. The mechanism of action of protein synthesis initiation factors from rabbit reticulocytes. J. Biol. Chem. 253, 3078\u20133087 (1978).",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "BFnsmb1572_CR10",
      "doi-asserted-by": "publisher",
      "first-page": "16990",
      "DOI": "10.1073/pnas.0407402101",
      "volume": "101",
      "author": "H Ji",
      "year": "2004",
      "unstructured": "Ji, H., Fraser, C.S., Yu, Y., Leary, J. & Doudna, J.A. Coordinated assembly of human translation initiation complexes by the hepatitis C virus internal ribosome entry site RNA. Proc. Natl. Acad. Sci. USA 101, 16990\u201316995 (2004).",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "BFnsmb1572_CR11",
      "doi-asserted-by": "publisher",
      "first-page": "373",
      "DOI": "10.1016/S0092-8674(01)00539-6",
      "volume": "107",
      "author": "CM Spahn",
      "year": "2001",
      "unstructured": "Spahn, C.M. et al. Structure of the 80S ribosome from Saccharomyces cerevisiae\u2013tRNA-ribosome and subunit-subunit interactions. Cell 107, 373\u2013386 (2001).",
      "journal-title": "Cell"
    },
    {
      "key": "BFnsmb1572_CR12",
      "first-page": "59",
      "volume-title": "Translational Control in Biology and Medicine",
      "author": "DJ Taylor",
      "year": "2007",
      "unstructured": "Taylor, D.J., Frank, J. & Kinzy, T.G. Structure and function of the eukaryotic ribosome and elongation fractors. in Translational Control in Biology and Medicine (eds. Mathews, M.B., Sonenberg, N. & Hershey, J.W.B.) pp. 59\u201385 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2007)."
    },
    {
      "key": "BFnsmb1572_CR13",
      "doi-asserted-by": "publisher",
      "first-page": "1959",
      "DOI": "10.1126/science.1058409",
      "volume": "291",
      "author": "CM Spahn",
      "year": "2001",
      "unstructured": "Spahn, C.M. et al. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit. Science 291, 1959\u20131962 (2001).",
      "journal-title": "Science"
    },
    {
      "key": "BFnsmb1572_CR14",
      "doi-asserted-by": "publisher",
      "first-page": "41",
      "DOI": "10.1016/j.molcel.2007.03.018",
      "volume": "26",
      "author": "LA Passmore",
      "year": "2007",
      "unstructured": "Passmore, L.A. et al. The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. Mol. Cell 26, 41\u201350 (2007).",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "BFnsmb1572_CR15",
      "doi-asserted-by": "publisher",
      "first-page": "6242",
      "DOI": "10.1128/JVI.74.14.6242-6250.2000",
      "volume": "74",
      "author": "VG Kolupaeva",
      "year": "2000",
      "unstructured": "Kolupaeva, V.G., Pestova, T.V. & Hellen, C.U. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J. Virol. 74, 6242\u20136250 (2000).",
      "journal-title": "J. Virol."
    },
    {
      "key": "BFnsmb1572_CR16",
      "doi-asserted-by": "publisher",
      "first-page": "369",
      "DOI": "10.1016/j.cell.2004.09.038",
      "volume": "119",
      "author": "GA Otto",
      "year": "2004",
      "unstructured": "Otto, G.A. & Puglisi, J.D. The pathway of HCV IRES-mediated translation initiation. Cell 119, 369\u2013380 (2004).",
      "journal-title": "Cell"
    },
    {
      "key": "BFnsmb1572_CR17",
      "doi-asserted-by": "publisher",
      "first-page": "465",
      "DOI": "10.1016/j.cell.2004.08.001",
      "volume": "118",
      "author": "CM Spahn",
      "year": "2004",
      "unstructured": "Spahn, C.M. et al. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell 118, 465\u2013475 (2004).",
      "journal-title": "Cell"
    },
    {
      "key": "BFnsmb1572_CR18",
      "doi-asserted-by": "publisher",
      "first-page": "3078",
      "DOI": "10.1101/gad.1255704",
      "volume": "18",
      "author": "A Unbehaun",
      "year": "2004",
      "unstructured": "Unbehaun, A., Borukhov, S.I., Hellen, C.U. & Pestova, T.V. Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. Genes Dev. 18, 3078\u20133093 (2004).",
      "journal-title": "Genes Dev."
    },
    {
      "key": "BFnsmb1572_CR19",
      "doi-asserted-by": "publisher",
      "first-page": "811",
      "DOI": "10.1016/j.molcel.2007.05.019",
      "volume": "26",
      "author": "CS Fraser",
      "year": "2007",
      "unstructured": "Fraser, C.S., Berry, K.E., Hershey, J.W. & Doudna, J.A. eIF3j is located in the decoding center of the human 40S ribosomal subunit. Mol. Cell 26, 811\u2013819 (2007).",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "BFnsmb1572_CR20",
      "doi-asserted-by": "publisher",
      "first-page": "286",
      "DOI": "10.1016/j.cell.2007.08.041",
      "volume": "131",
      "author": "AV Pisarev",
      "year": "2007",
      "unstructured": "Pisarev, A.V., Hellen, C.U. & Pestova, T.V. Recycling of eukaryotic posttermination ribosomal complexes. Cell 131, 286\u2013299 (2007).",
      "journal-title": "Cell"
    },
    {
      "key": "BFnsmb1572_CR21",
      "doi-asserted-by": "publisher",
      "first-page": "419",
      "DOI": "10.1016/S0076-6879(88)64058-4",
      "volume": "164",
      "author": "D Hartz",
      "year": "1988",
      "unstructured": "Hartz, D., McPheeters, D.S., Traut, R. & Gold, L. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164, 419\u2013425 (1988).",
      "journal-title": "Methods Enzymol."
    },
    {
      "key": "BFnsmb1572_CR22",
      "doi-asserted-by": "crossref",
      "first-page": "1554",
      "DOI": "10.1016/S0021-9258(18)45981-9",
      "volume": "267",
      "author": "DD Anthony",
      "year": "1992",
      "unstructured": "Anthony, D.D. & Merrick, W.C. Analysis of 40 S and 80 S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition. J. Biol. Chem. 267, 1554\u20131562 (1992).",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "BFnsmb1572_CR23",
      "doi-asserted-by": "publisher",
      "first-page": "4853",
      "DOI": "10.1093/nar/26.21.4853",
      "volume": "26",
      "author": "M Kozak",
      "year": "1998",
      "unstructured": "Kozak, M. Primer extension analysis of eukaryotic ribosome-mRNA complexes. Nucleic Acids Res. 26, 4853\u20134859 (1998).",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "BFnsmb1572_CR24",
      "doi-asserted-by": "publisher",
      "first-page": "194",
      "DOI": "10.1017/S1355838201001790",
      "volume": "7",
      "author": "JS Kieft",
      "year": "2001",
      "unstructured": "Kieft, J.S., Zhou, K., Jubin, R. & Doudna, J.A. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 7, 194\u2013206 (2001).",
      "journal-title": "RNA"
    },
    {
      "key": "BFnsmb1572_CR25",
      "doi-asserted-by": "publisher",
      "first-page": "8165",
      "DOI": "10.1074/jbc.M610860200",
      "volume": "282",
      "author": "L ElAntak",
      "year": "2007",
      "unstructured": "ElAntak, L., Tzakos, A.G., Locker, N. & Lukavsky, P.J. Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit. J. Biol. Chem. 282, 8165\u20138174 (2007).",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "BFnsmb1572_CR26",
      "doi-asserted-by": "publisher",
      "first-page": "175",
      "DOI": "10.1016/S0076-6879(00)18052-8",
      "volume": "318",
      "author": "S Joseph",
      "year": "2000",
      "unstructured": "Joseph, S. & Noller, H.F. Directed hydroxyl radical probing using iron(II) tethered to RNA. Methods Enzymol. 318, 175\u2013190 (2000).",
      "journal-title": "Methods Enzymol."
    },
    {
      "key": "BFnsmb1572_CR27",
      "doi-asserted-by": "publisher",
      "first-page": "6010",
      "DOI": "10.1002/j.1460-2075.1995.tb00289.x",
      "volume": "14",
      "author": "JE Reynolds",
      "year": "1995",
      "unstructured": "Reynolds, J.E. et al. Unique features of internal initiation of hepatitis C virus RNA translation. EMBO J. 14, 6010\u20136020 (1995).",
      "journal-title": "EMBO J."
    },
    {
      "key": "BFnsmb1572_CR28",
      "doi-asserted-by": "publisher",
      "first-page": "1355",
      "DOI": "10.1128/MCB.26.4.1355-1372.2006",
      "volume": "26",
      "author": "AV Jivotovskaya",
      "year": "2006",
      "unstructured": "Jivotovskaya, A.V., Valasek, L., Hinnebusch, A.G. & Nielsen, K.H. Eukaryotic translation initiation factor 3 (eIF3) and eIF2 can promote mRNA binding to 40S subunits independently of eIF4G in yeast. Mol. Cell. Biol. 26, 1355\u20131372 (2006).",
      "journal-title": "Mol. Cell. Biol."
    },
    {
      "key": "BFnsmb1572_CR29",
      "doi-asserted-by": "publisher",
      "first-page": "1609",
      "DOI": "10.1038/emboj.2008.90",
      "volume": "27",
      "author": "AV Pisarev",
      "year": "2008",
      "unstructured": "Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U. & Pestova, T.V. Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J. 27, 1609\u20131621 (2008).",
      "journal-title": "EMBO J."
    },
    {
      "key": "BFnsmb1572_CR30",
      "doi-asserted-by": "publisher",
      "first-page": "2906",
      "DOI": "10.1101/gad.1020902",
      "volume": "16",
      "author": "TV Pestova",
      "year": "2002",
      "unstructured": "Pestova, T.V. & Kolupaeva, V.G. The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev. 16, 2906\u20132922 (2002).",
      "journal-title": "Genes Dev."
    },
    {
      "key": "BFnsmb1572_CR31",
      "doi-asserted-by": "publisher",
      "first-page": "8946",
      "DOI": "10.1074/jbc.M312745200",
      "volume": "279",
      "author": "CS Fraser",
      "year": "2004",
      "unstructured": "Fraser, C.S. et al. The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro. J. Biol. Chem. 279, 8946\u20138956 (2004).",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "BFnsmb1572_CR32",
      "doi-asserted-by": "publisher",
      "first-page": "1496",
      "DOI": "10.1017/S135583820101038X",
      "volume": "7",
      "author": "TV Pestova",
      "year": "2001",
      "unstructured": "Pestova, T.V. & Hellen, C.U. Preparation and activity of synthetic unmodified mammalian tRNAi(Met) in initiation of translation in vitro. RNA 7, 1496\u20131505 (2001).",
      "journal-title": "RNA"
    },
    {
      "key": "BFnsmb1572_CR33",
      "doi-asserted-by": "publisher",
      "first-page": "1116",
      "DOI": "10.1038/nsmb1025",
      "volume": "12",
      "author": "RJ Spanggord",
      "year": "2005",
      "unstructured": "Spanggord, R.J., Siu, F., Ke, A. & Doudna, J.A. RNA-mediated interaction between the peptide-binding and GTPase domains of the signal recognition particle. Nat. Struct. Mol. Biol. 12, 1116\u20131122 (2005).",
      "journal-title": "Nat. Struct. Mol. Biol."
    },
    {
      "key": "BFnsmb1572_CR34",
      "doi-asserted-by": "publisher",
      "first-page": "513",
      "DOI": "10.1006/jmbi.1999.3095",
      "volume": "292",
      "author": "JS Kieft",
      "year": "1999",
      "unstructured": "Kieft, J.S. et al. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J. Mol. Biol. 292, 513\u2013529 (1999).",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "BFnsmb1572_CR35",
      "doi-asserted-by": "publisher",
      "first-page": "2786",
      "DOI": "10.1101/gad.1141803",
      "volume": "17",
      "author": "IB Lomakin",
      "year": "2003",
      "unstructured": "Lomakin, I.B., Kolupaeva, V.G., Marintchev, A., Wagner, G. & Pestova, T.V. Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. Genes Dev. 17, 2786\u20132797 (2003).",
      "journal-title": "Genes Dev."
    },
    {
      "key": "BFnsmb1572_CR36",
      "doi-asserted-by": "publisher",
      "first-page": "461",
      "DOI": "10.1016/S0076-6879(00)18070-X",
      "volume": "318",
      "author": "GM Culver",
      "year": "2000",
      "unstructured": "Culver, G.M. & Noller, H.F. Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol. 318, 461\u2013475 (2000).",
      "journal-title": "Methods Enzymol."
    },
    {
      "key": "BFnsmb1572_CR37",
      "doi-asserted-by": "publisher",
      "first-page": "147",
      "DOI": "10.1016/S0076-6879(07)30007-4",
      "volume": "430",
      "author": "AV Pisarev",
      "year": "2007",
      "unstructured": "Pisarev, A.V., Unbehaun, A., Hellen, C.U. & Pestova, T.V. Assembly and analysis of eukaryotic translation initiation complexes. Methods Enzymol. 430, 147\u2013177 (2007).",
      "journal-title": "Methods Enzymol."
    }
  ],
  "container-title": "Nature Structural &amp; Molecular Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "http://www.nature.com/articles/nsmb.1572.pdf",
      "content-type": "application/pdf",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "http://www.nature.com/articles/nsmb.1572",
      "content-type": "text/html",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "http://www.nature.com/articles/nsmb.1572.pdf",
      "content-type": "application/pdf",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2023,
        5,
        19
      ]
    ],
    "date-time": "2023-05-19T04:24:29Z",
    "timestamp": 1684470269000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://www.nature.com/articles/nsmb.1572"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2009,
        3,
        15
      ]
    ]
  },
  "references-count": 37,
  "journal-issue": {
    "issue": "4",
    "published-print": {
      "date-parts": [
        [
          2009,
          4
        ]
      ]
    }
  },
  "alternative-id": [
    "BFnsmb1572"
  ],
  "URL": "http://dx.doi.org/10.1038/nsmb.1572",
  "relation": {
    "has-review": [
      {
        "id-type": "doi",
        "id": "10.3410/f.1161114.621583",
        "asserted-by": "object"
      }
    ]
  },
  "ISSN": [
    "1545-9993",
    "1545-9985"
  ],
  "subject": [],
  "container-title-short": "Nat Struct Mol Biol",
  "published": {
    "date-parts": [
      [
        2009,
        3,
        15
      ]
    ]
  }
}