DOI: 10.1038/nprot.2007.406. Version 1.2 of the Crystallography and NMR system

Version 1.2 of the Crystallography and NMR system

10.1038/nprot.2007.406

Crossref journal-article

Springer Science and Business Media LLC

Nature Protocols (297)

Bibliography

Brunger, A. T. (2007). Version 1.2 of the Crystallography and NMR system. Nature Protocols, 2(11), 2728â2733.

Authors 1

Axel T Brunger (first)

References 21 Referenced 1,246

Brunger, A.T. et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. 54 (Part 5): 905–921 (1998). / Acta Crystallogr. by AT Brunger (1998)
Brunger, A.T. X-PLOR, version 3.1. A System for X-ray Crystallography and NMR (Yale University Press, New Haven, Connecticut, USA, 1992). / X-PLOR, version 3.1. A System for X-ray Crystallography and NMR by AT Brunger (1992)
Schwieters, C.D., Kuszewski, J.J., Tjandra, N. & Clore, G.M. The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160, 65–73 (2003). (10.1016/S1090-7807(02)00014-9) / J. Magn. Reson. by CD Schwieters (2003)
Dominguez, C., Boelens, R. & Bonvin, A.M. HADDOCK: a protein–protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125, 1731–1737 (2003). (10.1021/ja026939x) / J. Am. Chem. Soc. by C Dominguez (2003)
Linge, J.P., Habeck, M., Rieping, W. & Nilges, M. ARIA: automated NOE assignment and NMR structure calculation. Bioinformatics (Oxford, England) 19, 315–316 (2003). (10.1093/bioinformatics/19.2.315) / Bioinformatics (Oxford, England) by JP Linge (2003)
Moulinier, L., Case, D.A. & Simonson, T. Reintroducing electrostatics into protein X-ray structure refinement: bulk solvent treated as a dielectric continuum. Acta Crystallogr. 59, 2094–2103 (2003). / Acta Crystallogr. by L Moulinier (2003)
Wall, M.E., Subramaniam, S. & Phillips, G.N. Jr. Protein structure determination using a database of interatomic distance probabilities. Protein Sci. 8, 2720–2727 (1999). (10.1110/ps.8.12.2720) / Protein Sci. by ME Wall (1999)
Clarage, J.B. & Phillips, G.N. Jr. Cross-validation tests of time-averaged molecular dynamics refinements for determination of protein structures by X-ray crystallography. Acta Crystallogr. 50, 24–36 (1994). / Acta Crystallogr. by JB Clarage (1994)
Wang, H. & Stubbs, G. Molecular dynamics in refinement against fiber diffraction data. Acta Crystallogr. A 49, 504–513 (1993). (10.1107/S0108767392011255) / Acta Crystallogr. A by H Wang (1993)
Grosse-Kunstleve, R. & Adams, P. On the handling of atomic anisotropic displacement parameters. J. Appl. Crystallogr. 35, 477–480 (2002). (10.1107/S0021889802008580) / J. Appl. Crystallogr. by R Grosse-Kunstleve (2002)
Lee, B. & Richards, F.M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55, 379–400 (1971). (10.1016/0022-2836(71)90324-X) / J. Mol. Biol. by B Lee (1971)
Richards, F.M. Calculation of molecular volumes and areas for structures of known geometry. Methods Enzymol. 115, 440–464 (1985). (10.1016/0076-6879(85)15032-9) / Methods Enzymol. by FM Richards (1985)
Phillips, S.E. Structure and refinement of oxymyoglobin at 1.6 Å resolution. J. Mol. Biol. 142, 531–554 (1980). (10.1016/0022-2836(80)90262-4) / J. Mol. Biol. by SE Phillips (1980)
Afonine, P.V., Grosse-Kunstleve, R.W. & Adams, P.D. A robust bulk-solvent correction and anisotropic scaling procedure. Acta Crystallogr. 61, 850–855 (2005). (10.1107/S0108767305093189) / Acta Crystallogr. by PV Afonine (2005)
Jiang, J.S. & Brunger, A.T. Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. J. Mol. Biol. 243, 100–115 (1994). (10.1006/jmbi.1994.1633) / J. Mol. Biol. by JS Jiang (1994)
DeLaBarre, B. & Brunger, A.T. Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains. Nat. Struct. Biol. 10, 856–863 (2003). (10.1038/nsb972) / Nat. Struct. Biol. by B DeLaBarre (2003)
DeLaBarre, B. & Brunger, A.T. Nucleotide dependent motion and mechanism of action of p97/VCP. J. Mol. Biol. 347, 437–452 (2005). (10.1016/j.jmb.2005.01.060) / J. Mol. Biol. by B DeLaBarre (2005)
Bass, R.B., Strop, P., Barclay, M. & Rees, D.C. Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel. Science 298, 1582–1587 (2002). (10.1126/science.1077945) / Science by RB Bass (2002)
DeLaBarre, B. & Brunger, A.T. Considerations for the refinement of low-resolution crystal structures. Acta Crystallogr. 62, 923–932 (2006). / Acta Crystallogr. by B DeLaBarre (2006)
Westbrook, J.D. & Fitzgerald, P.M. The PDB format, mmCIF, and other data formats. Methods Biochem. Anal. 44, 161–179 (2003). / Methods Biochem. Anal. by JD Westbrook (2003)
CCP. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. 50, 760–763 (1994).

Dates

Type	When
Created	17 years, 9 months ago (Oct. 25, 2007, 9:44 a.m.)
Deposited	2 years, 3 months ago (May 18, 2023, 8:07 p.m.)
Indexed	1 week, 3 days ago (Aug. 12, 2025, 5:36 p.m.)
Issued	17 years, 9 months ago (Oct. 25, 2007)
Published	17 years, 9 months ago (Oct. 25, 2007)
Published Online	17 years, 9 months ago (Oct. 25, 2007)
Published Print	17 years, 9 months ago (Nov. 1, 2007)

Funders 0

None

BibTeX

@article{Brunger_2007, title={Version 1.2 of the Crystallography and NMR system}, volume={2}, ISSN={1750-2799}, url={http://dx.doi.org/10.1038/nprot.2007.406}, DOI={10.1038/nprot.2007.406}, number={11}, journal={Nature Protocols}, publisher={Springer Science and Business Media LLC}, author={Brunger, Axel T}, year={2007}, month=oct, pages={2728–2733} }

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