Crossref
journal-article
Springer Science and Business Media LLC
Nature Methods (297)
References
37
Referenced
336
-
Conrad, C. & Gerlich, D.W. Automated microscopy for high-content RNAi screening. J. Cell Biol. 188, 453–461 (2010).
(
10.1083/jcb.200910105
) / J. Cell Biol. by C Conrad (2010) -
Doil, C. et al. RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins. Cell 136, 435–446 (2009).
(
10.1016/j.cell.2008.12.041
) / Cell by C Doil (2009) -
Collinet, C. et al. Systems survey of endocytosis by multiparametric image analysis. Nature 464, 243–249 (2010).
(
10.1038/nature08779
) / Nature by C Collinet (2010) -
Sonnichsen, B. et al. Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans. Nature 434, 462–469 (2005).
(
10.1038/nature03353
) / Nature by B Sonnichsen (2005) -
Goshima, G. et al. Genes required for mitotic spindle assembly in Drosophila S2 cells. Science 316, 417–421 (2007).
(
10.1126/science.1141314
) / Science by G Goshima (2007) -
Neumann, B. et al. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature 464, 721–727 (2010).
(
10.1038/nature08869
) / Nature by B Neumann (2010) -
Neumann, B. et al. High-throughput RNAi screening by time-lapse imaging of live human cells. Nat. Methods 3, 385–390 (2006).
(
10.1038/nmeth876
) / Nat. Methods by B Neumann (2006) -
Loo, L.H., Wu, L.F. & Altschuler, S.J. Image-based multivariate profiling of drug responses from single cells. Nat. Methods 4, 445–453 (2007).
(
10.1038/nmeth1032
) / Nat. Methods by LH Loo (2007) -
Conrad, C. et al. Automatic identification of subcellular phenotypes on human cell arrays. Genome Res. 14, 1130–1136 (2004).
(
10.1101/gr.2383804
) / Genome Res. by C Conrad (2004) -
Glory, E. & Murphy, R.F. Automated subcellular location determination and high-throughput microscopy. Dev. Cell 12, 7–16 (2007).
(
10.1016/j.devcel.2006.12.007
) / Dev. Cell by E Glory (2007) -
Harder, N. et al. Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time. Genome Res. 19, 2113–2124 (2009).
(
10.1101/gr.092494.109
) / Genome Res. by N Harder (2009) -
Zhou, X., Li, F., Yan, J. & Wong, S.T. A novel cell segmentation method and cell phase identification using Markov model. IEEE Trans. Inf. Technol. Biomed. 13, 152–157 (2009).
(
10.1109/TITB.2008.2007098
) / IEEE Trans. Inf. Technol. Biomed. by X Zhou (2009) - Gerlich, D. & Ellenberg, J. 4D imaging to assay complex dynamics in live specimens. Nat. Cell Biol. 5, S14–S19 (2003). / Nat. Cell Biol. by D Gerlich (2003)
-
Schmitz, M.H. & Gerlich, D.W. Automated live microscopy to study mitotic gene function in fluorescent reporter cell lines. Methods Mol. Biol. 545, 113–134 (2009).
(
10.1007/978-1-60327-993-2_7
) / Methods Mol. Biol. by MH Schmitz (2009) -
Boland, M.V. & Murphy, R.F. A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 17, 1213–1223 (2001).
(
10.1093/bioinformatics/17.12.1213
) / Bioinformatics by MV Boland (2001) -
Wahlby, C., Sintorn, I.M., Erlandsson, F. & Borgefors, G. Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J. Microscopy 215, 67–76 (2004).
(
10.1111/j.0022-2720.2004.01338.x
) / J. Microscopy by C Wahlby (2004) -
Walker, R. & Jackway, P. Statistical geometric features-extensions for cytological textureanalysis. Proc. 13th Int. Conf. Pattern Recognition 2, 790–794 (1996).
(
10.1109/ICPR.1996.546931
) / Proc. 13th Int. Conf. Pattern Recognition by R Walker (1996) -
Haralick, R., Dinstein & Shanmugam Textural features for image classification. IEEE Transactions on Systems, Man and Cybernetics 3, 610–621 (1973).
(
10.1109/TSMC.1973.4309314
) / IEEE Transactions on Systems, Man and Cybernetics by R Haralick (1973) -
Boser, B.E., Guyon, I. & Vapnik, V. A training algorithm for optimal margin classifiers. COLT ′92: Proceedings of the Fifth Annual Workshop on Computational Learning Theory (1992).
(
10.1145/130385.130401
) -
Wang, M. et al. Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics 24, 94–101 (2008).
(
10.1093/bioinformatics/btm530
) / Bioinformatics by M Wang (2008) -
Chen, X., Zhou, X. & Wong, S.T. Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans. Biomed. Eng. 53, 762–766 (2006).
(
10.1109/TBME.2006.870201
) / IEEE Trans. Biomed. Eng. by X Chen (2006) -
Durbin, R.R., Eddy, S., Krogh, A. & Mitchison, G. Biological sequence analysis: probabilistic models of proteins and nucleic acids. (Cambridge University Press, 1998).
(
10.1017/CBO9780511790492
) -
Viterbi, A. Error bounds for convolutional codes and an asymptotically optimum decoding algorithm. IEEE Trans. Inf. Theory 13, 260–269 (1967).
(
10.1109/TIT.1967.1054010
) / IEEE Trans. Inf. Theory by A Viterbi (1967) -
Baum, L.E., Petrie, T., Soules, G. & Weiss, N. A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains. Ann. Math. Stat. 41, 164–171 (1970).
(
10.1214/aoms/1177697196
) / Ann. Math. Stat. by LE Baum (1970) -
Dempster, A.P., Laird, N.M. & Rubin, D.B. Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. B 39, 1–3 (1977).
(
10.1111/j.2517-6161.1977.tb01600.x
) / J. R. Stat. Soc. B by AP Dempster (1977) -
Meraldi, P., Draviam, V.M. & Sorger, P.K. Timing and checkpoints in the regulation of mitotic progression. Dev. Cell 7, 45–60 (2004).
(
10.1016/j.devcel.2004.06.006
) / Dev. Cell by P Meraldi (2004) -
Hagting, A. et al. Human securin proteolysis is controlled by the spindle checkpoint and reveals when the APC/C switches from activation by Cdc20 to Cdh1. J. Cell Biol. 157, 1125–1137 (2002).
(
10.1083/jcb.200111001
) / J. Cell Biol. by A Hagting (2002) -
Bollen, M., Gerlich, D.W. & Lesage, B. Mitotic phosphatases: from entry guards to exit guides. Trends Cell Biol. 19, 606–616 (2009).
(
10.1016/j.tcb.2009.06.005
) / Trends Cell Biol. by M Bollen (2009) -
Wolthuis, R. et al. Cdc20 and Cks direct the spindle checkpoint-independent destruction of cyclin A. Mol. Cell 30, 290–302 (2008).
(
10.1016/j.molcel.2008.02.027
) / Mol. Cell by R Wolthuis (2008) -
Wang, M., Zhou, X., King, R.W. & Wong, S.T. Context based mixture model for cell phase identification in automated fluorescence microscopy. BMC Bioinformatics 8, 32 (2007).
(
10.1186/1471-2105-8-32
) / BMC Bioinformatics by M Wang (2007) -
Erfle, H. et al. Reverse transfection on cell arrays for high content screening microscopy. Nat. Protoc. 2, 392–399 (2007).
(
10.1038/nprot.2006.483
) / Nat. Protoc. by H Erfle (2007) -
Snapp, E.L. et al. Formation of stacked ER cisternae by low affinity protein interactions. J. Cell Biol. 163, 257–269 (2003).
(
10.1083/jcb.200306020
) / J. Cell Biol. by EL Snapp (2003) -
Dultz, E. et al. Systematic kinetic analysis of mitotic dis- and reassembly of the nuclear pore in living cells. J. Cell Biol. 180, 857–865 (2008).
(
10.1083/jcb.200707026
) / J. Cell Biol. by E Dultz (2008) -
Schaub, B.E., Berger, B., Berger, E.G. & Rohrer, J. Transition of galactosyltransferase 1 from trans-Golgi cisterna to the trans-Golgi network is signal mediated. Mol. Biol. Cell 17, 5153–5162 (2006).
(
10.1091/mbc.e06-08-0665
) / Mol. Biol. Cell by BE Schaub (2006) -
Leonhardt, H. et al. Dynamics of DNA replication factories in living cells. J. Cell Biol. 149, 271–280 (2000).
(
10.1083/jcb.149.2.271
) / J. Cell Biol. by H Leonhardt (2000) -
Steigemann, P. et al. Aurora B-mediated abscission checkpoint protects against tetraploidization. Cell 136, 473–484 (2009).
(
10.1016/j.cell.2008.12.020
) / Cell by P Steigemann (2009) - Wu, T.F., Lin, C.J. & Weng, R.C. Probability estimates for multi-class classification by pairwise coupling. J. Machine Learning Res. 5, 975–1005 (2004). / J. Machine Learning Res. by TF Wu (2004)
Dates
Type | When |
---|---|
Created | 15 years ago (Aug. 8, 2010, 1:51 p.m.) |
Deposited | 6 months ago (Feb. 23, 2025, 6:15 p.m.) |
Indexed | 2 days, 12 hours ago (Aug. 23, 2025, 9:33 p.m.) |
Issued | 15 years ago (Aug. 8, 2010) |
Published | 15 years ago (Aug. 8, 2010) |
Published Online | 15 years ago (Aug. 8, 2010) |
Published Print | 14 years, 11 months ago (Sept. 1, 2010) |
@article{Held_2010, title={CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging}, volume={7}, ISSN={1548-7105}, url={http://dx.doi.org/10.1038/nmeth.1486}, DOI={10.1038/nmeth.1486}, number={9}, journal={Nature Methods}, publisher={Springer Science and Business Media LLC}, author={Held, Michael and Schmitz, Michael H A and Fischer, Bernd and Walter, Thomas and Neumann, Beate and Olma, Michael H and Peter, Matthias and Ellenberg, Jan and Gerlich, Daniel W}, year={2010}, month=aug, pages={747–754} }