DOI: 10.1038/nmeth.1179. Whole-genome sequencing and variant discovery in C. elegans

Whole-genome sequencing and variant discovery in C. elegans

10.1038/nmeth.1179

Crossref journal-article

Springer Science and Business Media LLC

Nature Methods (297)

Bibliography

Hillier, L. W., Marth, G. T., Quinlan, A. R., Dooling, D., Fewell, G., Barnett, D., Fox, P., Glasscock, J. I., Hickenbotham, M., Huang, W., Magrini, V. J., Richt, R. J., Sander, S. N., Stewart, D. A., Stromberg, M., Tsung, E. F., Wylie, T., Schedl, T., Wilson, R. K., & Mardis, E. R. (2008). Whole-genome sequencing and variant discovery in C. elegans. Nature Methods, 5(2), 183â188.

Authors 20

LaDeana W Hillier (first)
Gabor T Marth (additional)
Aaron R Quinlan (additional)
David Dooling (additional)
Ginger Fewell (additional)
Derek Barnett (additional)
Paul Fox (additional)
Jarret I Glasscock (additional)
Matthew Hickenbotham (additional)
Weichun Huang (additional)
Vincent J Magrini (additional)
Ryan J Richt (additional)
Sacha N Sander (additional)
Donald A Stewart (additional)
Michael Stromberg (additional)
Eric F Tsung (additional)
Todd Wylie (additional)
Tim Schedl (additional)
Richard K Wilson (additional)
Elaine R Mardis (additional)

References 17 Referenced 338

C. elegans Sequencing Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012–2018 (1998). (10.1126/science.282.5396.2012)
Waterston, R. et al. The genome of the nematode Caenorhabditis elegans. Cold Spring Harb. Symp. Quant. Biol. 58, 367–376 (1993). (10.1101/SQB.1993.058.01.043) / Cold Spring Harb. Symp. Quant. Biol. by R Waterston (1993)
Lander, E.S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860–921 (2001). (10.1038/35057062) / Nature by ES Lander (2001)
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931–945 (2004). (10.1038/nature03001)
Harris, T.W. et al. WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res. 32, D411–D417 (2004). (10.1093/nar/gkh066) / Nucleic Acids Res. by TW Harris (2004)
Stein, L.D. et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1, e45 (2003). (10.1371/journal.pbio.0000045) / PLoS Biol. by LD Stein (2003)
Hodgkin, J. & Doniach, T. Natural variation and copulatory plug formation in Caenorhabditis elegans. Genetics 146, 149–164 (1997). (10.1093/genetics/146.1.149) / Genetics by J Hodgkin (1997)
Marth, G.T. et al. A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23, 452–456 (1999). (10.1038/70570) / Nat. Genet. by GT Marth (1999)
Bieri, T. et al. WormBase: new content and better access. Nucleic Acids Res. 35, D506–D510 (2007). (10.1093/nar/gkl818) / Nucleic Acids Res. by T Bieri (2007)
Tuzun, E. et al. Fine-scale structural variation of the human genome. Nat. Genet. 37, 727–732 (2005). (10.1038/ng1562) / Nat. Genet. by E Tuzun (2005)
Denver, D.R., Morris, K. & Thomas, W.K. Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing. Mol. Biol. Evol. 20, 393–400 (2003). (10.1093/molbev/msg044) / Mol. Biol. Evol. by DR Denver (2003)
Smit, A.F. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6, 743–748 (1996). (10.1016/S0959-437X(96)80030-X) / Curr. Opin. Genet. Dev. by AF Smit (1996)
Bhangale, T.R., Stephens, M. & Nickerson, D.A. Automating resequencing-based detection of insertion-deletion polymorphisms. Nat. Genet. 38, 1457–1462 (2006). (10.1038/ng1925) / Nat. Genet. by TR Bhangale (2006)
Stephens, M., Sloan, J.S., Robertson, P.D., Scheet, P. & Nickerson, D.A. Automating sequence-based detection and genotyping of SNPs from diploid samples. Nat. Genet. 38, 375–381 (2006). (10.1038/ng1746) / Nat. Genet. by M Stephens (2006)
Nickerson, D.A., Kolker, N., Taylor, S.L. & Rieder, M.J. Sequence-based detection of single nucleotide polymorphisms. Methods Mol. Biol. 175, 29–35 (2001). / Methods Mol. Biol. by DA Nickerson (2001)
Koch, R., van Luenen, H.G., van der Horst, M., Thijssen, K.L. & Plasterk, R.H. Single nucleotide polymorphisms in wild isolates of Caenorhabditis elegans. Genome Res. 10, 1690–1696 (2000). (10.1101/gr.GR-1471R) / Genome Res. by R Koch (2000)
Gordon, D., Abajian, C. & Green, P. Consed: a graphical tool for sequence finishing. Genome Res. 8, 195–202 (1998). (10.1101/gr.8.3.195) / Genome Res. by D Gordon (1998)

Dates

Type	When
Created	17 years, 7 months ago (Jan. 20, 2008, 1:53 p.m.)
Deposited	2 years, 3 months ago (May 18, 2023, 6:36 p.m.)
Indexed	1 day, 20 hours ago (Aug. 23, 2025, 1:03 a.m.)
Issued	17 years, 7 months ago (Jan. 20, 2008)
Published	17 years, 7 months ago (Jan. 20, 2008)
Published Online	17 years, 7 months ago (Jan. 20, 2008)
Published Print	17 years, 6 months ago (Feb. 1, 2008)

Funders 0

None

BibTeX

@article{Hillier_2008, title={Whole-genome sequencing and variant discovery in C. elegans}, volume={5}, ISSN={1548-7105}, url={http://dx.doi.org/10.1038/nmeth.1179}, DOI={10.1038/nmeth.1179}, number={2}, journal={Nature Methods}, publisher={Springer Science and Business Media LLC}, author={Hillier, LaDeana W and Marth, Gabor T and Quinlan, Aaron R and Dooling, David and Fewell, Ginger and Barnett, Derek and Fox, Paul and Glasscock, Jarret I and Hickenbotham, Matthew and Huang, Weichun and Magrini, Vincent J and Richt, Ryan J and Sander, Sacha N and Stewart, Donald A and Stromberg, Michael and Tsung, Eric F and Wylie, Todd and Schedl, Tim and Wilson, Richard K and Mardis, Elaine R}, year={2008}, month=jan, pages={183–188} }

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