DOI: 10.1038/ng881. Network motifs in the transcriptional regulation network of Escherichia coli

Network motifs in the transcriptional regulation network of Escherichia coli

10.1038/ng881

Crossref journal-article

Springer Science and Business Media LLC

Nature Genetics (297)

Bibliography

Shen-Orr, S. S., Milo, R., Mangan, S., & Alon, U. (2002). Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genetics, 31(1), 64â68.

Authors 4

Shai S. Shen-Orr (first)
Ron Milo (additional)
Shmoolik Mangan (additional)
Uri Alon (additional)

References 21 Referenced 2,337

Bray, D. Protein molecules as computational elements in living cells. Nature 376, 307–312 (1995). (10.1038/376307a0) / Nature by D Bray (1995)
Hartwell, L.H., Hopfield, J.J., Leibler, S. & Murray, A.W. From molecular to modular cell biology. Nature 402, C47–52 (1999). (10.1038/35011540) / Nature by LH Hartwell (1999)
Thieffry, D., Huerta, A.M., Perez-Rueda, E. & Collado-Vides, J. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. Bioessays 20, 433–440 (1998). (10.1002/(SICI)1521-1878(199805)20:5<433::AID-BIES10>3.0.CO;2-2) / Bioessays by D Thieffry (1998)
McAdams, H.H. & Arkin, A. Simulation of prokaryotic genetic circuits. Annu. Rev. Biophys. Biomol. Struct. 27, 199–224 (1998). (10.1146/annurev.biophys.27.1.199) / Annu. Rev. Biophys. Biomol. Struct. by HH McAdams (1998)
McAdams, H.H. & Shapiro, L. Circuit simulation of genetic networks. Science 269, 650–656 (1995). (10.1126/science.7624793) / Science by HH McAdams (1995)
Savageau, M. & Neidhart, F.C. Regulation beyond the operon. in Escherichia coli and Salmonella: Cellular and Molecular Biology (ed. Neidhart, F.C.) 1310–1324 (American Society for Microbiology, Washington D.C., 1996). / Regulation beyond the operon. in Escherichia coli and Salmonella: Cellular and Molecular Biology by M Savageau (1996)
Strogatz, S.H. Exploring complex networks. Nature 410, 268–276 (2001). (10.1038/35065725) / Nature by SH Strogatz (2001)
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Kauffman, S.A. Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 22, 437–467 (1969). (10.1016/0022-5193(69)90015-0) / J. Theor. Biol. by SA Kauffman (1969)
Barabasi, A.L. & Albert, R. Emergence of scaling in random networks. Science 286, 509–512 (1999). (10.1126/science.286.5439.509) / Science by AL Barabasi (1999)
Hughes, J.D., Estep, P.W., Tavazoie, S. & Church, G.M. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296, 1205–1214 (2000). (10.1006/jmbi.2000.3519) / J. Mol. Biol. by JD Hughes (2000)
Hartemink, A.J., Gifford, D.K., Jaakkola, T.S. & Young, R.A. Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. Pac. Symp. Biocomput., 422–433 (2001). (10.1142/9789814447362_0042)
Newman, M.E., Strogatz, S.H. & Watts, D.J. Random graphs with arbitrary degree distributions and their applications. Phys. Rev. E 64, 026118 (2001). (10.1103/PhysRevE.64.026118) / Phys. Rev. E by ME Newman (2001)
Salgado, H. et al. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res. 29, 72–74 (2001). (10.1093/nar/29.1.72) / Nucleic Acids Res. by H Salgado (2001)
Schleif, R. Regulation of the L-arabinose operon of Escherichia coli. Trends Genet. 16, 559–565 (2000). (10.1016/S0168-9525(00)02153-3) / Trends Genet. by R Schleif (2000)
Hengge-Aronis, R. Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli. Cell 72, 165–168 (1993). (10.1016/0092-8674(93)90655-A) / Cell by R Hengge-Aronis (1993)
Yuh, C.H., Bolouri, H. & Davidson, E.H., Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science 279, 1896–1902 (1998). (10.1126/science.279.5358.1896) / Science by CH Yuh (1998)
Kalir, S. et al. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science 292, 2080–2083 (2001). (10.1126/science.1058758) / Science by S Kalir (2001)
Jeong, H., Tombor, B., Albert, R., Oltvai, Z.N. & Barabasi, A.L. The large-scale organization of metabolic networks. Nature 407, 651–654 (2000). (10.1038/35036627) / Nature by H Jeong (2000)
Duda, R.O. & Hart, P.E. Pattern Classification and Scene Analysis (Wiley, New York, 1973). / Pattern Classification and Scene Analysis by RO Duda (1973)
Kannan, R., Tetali, P. & Vempala, S., Markov-chain algorithms for generating bipartite graphs and tournaments. Random Structures and Algorithms 14, 293–308 (1999). (10.1002/(SICI)1098-2418(199907)14:4<293::AID-RSA1>3.0.CO;2-G) / Random Structures and Algorithms by R Kannan (1999)

Dates

Type	When
Created	23 years, 1 month ago (July 26, 2002, 4:54 a.m.)
Deposited	8 months, 3 weeks ago (Dec. 7, 2024, 5:56 a.m.)
Indexed	1 day, 5 hours ago (Aug. 28, 2025, 8:30 a.m.)
Issued	23 years, 4 months ago (April 22, 2002)
Published	23 years, 4 months ago (April 22, 2002)
Published Online	23 years, 4 months ago (April 22, 2002)
Published Print	23 years, 3 months ago (May 1, 2002)

Funders 0

None

BibTeX

@article{Shen_Orr_2002, title={Network motifs in the transcriptional regulation network of Escherichia coli}, volume={31}, ISSN={1546-1718}, url={http://dx.doi.org/10.1038/ng881}, DOI={10.1038/ng881}, number={1}, journal={Nature Genetics}, publisher={Springer Science and Business Media LLC}, author={Shen-Orr, Shai S. and Milo, Ron and Mangan, Shmoolik and Alon, Uri}, year={2002}, month=apr, pages={64–68} }

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