Bibliography
Yan, X.-J., Xu, J., Gu, Z.-H., Pan, C.-M., Lu, G., Shen, Y., Shi, J.-Y., Zhu, Y.-M., Tang, L., Zhang, X.-W., Liang, W.-X., Mi, J.-Q., Song, H.-D., Li, K.-Q., Chen, Z., & Chen, S.-J. (2011). Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia. Nature Genetics, 43(4), 309â315.
Authors
16
- Xiao-Jing Yan (first)
- Jie Xu (additional)
- Zhao-Hui Gu (additional)
- Chun-Ming Pan (additional)
- Gang Lu (additional)
- Yang Shen (additional)
- Jing-Yi Shi (additional)
- Yong-Mei Zhu (additional)
- Lin Tang (additional)
- Xiao-Wei Zhang (additional)
- Wen-Xue Liang (additional)
- Jian-Qing Mi (additional)
- Huai-Dong Song (additional)
- Ke-Qin Li (additional)
- Zhu Chen (additional)
- Sai-Juan Chen (additional)
References
46
Referenced
671
-
Bennett, J.M. et al. Proposals for the classification of the acute leukaemias. French-American-British (FAB) co-operative group. Br. J. Haematol. 33, 451–458 (1976).
(
10.1111/j.1365-2141.1976.tb03563.x
) / Br. J. Haematol. by JM Bennett (1976) -
Fenaux, P. et al. Acute monocytic leukaemia in adults: treatment and prognosis in 99 cases. Br. J. Haematol. 75, 41–48 (1990).
(
10.1111/j.1365-2141.1990.tb02614.x
) / Br. J. Haematol. by P Fenaux (1990) -
Bennett, J.M. et al. Long-term survival in acute myeloid leukemia: the Eastern Cooperative Oncology Group experience. Cancer 80, 2205–2209 (1997).
(
10.1002/(SICI)1097-0142(19971201)80:11+<2205::AID-CNCR7>3.0.CO;2-G
) / Cancer by JM Bennett (1997) -
Porcu, P. et al. Hyperleukocytic leukemias and leukostasis: a review of pathophysiology, clinical presentation and management. Leuk. Lymphoma 39, 1–18 (2000).
(
10.3109/10428190009053534
) / Leuk. Lymphoma by P Porcu (2000) -
Peterson, L., Dehner, L.P. & Brunning, R.D. Extramedullary masses as presenting features of acute monoblastic leukemia. Am. J. Clin. Pathol. 75, 140–148 (1981).
(
10.1093/ajcp/75.2.140
) / Am. J. Clin. Pathol. by L Peterson (1981) -
Tallman, M.S. et al. Acute monocytic leukemia (French-American-British classification M5) does not have a worse prognosis than other subtypes of acute myeloid leukemia: a report from the Eastern Cooperative Oncology Group. J. Clin. Oncol. 22, 1276–1286 (2004).
(
10.1200/JCO.2004.08.060
) / J. Clin. Oncol. by MS Tallman (2004) -
Schoch, C. et al. AML with 11q23/MLL abnormalities as defined by the WHO classification: incidence, partner chromosomes, FAB subtype, age distribution, and prognostic impact in an unselected series of 1897 cytogenetically analyzed AML cases. Blood 102, 2395–2402 (2003).
(
10.1182/blood-2003-02-0434
) / Blood by C Schoch (2003) -
Koh, Y. et al. Different clinical importance of FLT3 internal tandem duplications in AML according to FAB classification: possible existence of distinct leukemogenesis involving monocyte differentiation pathway. Ann. Hematol. 88, 1089–1097 (2009).
(
10.1007/s00277-009-0733-7
) / Ann. Hematol. by Y Koh (2009) -
Boissel, N. et al. Prevalence, clinical profile, and prognosis of NPM mutations in AML with normal karyotype. Blood 106, 3618–3620 (2005).
(
10.1182/blood-2005-05-2174
) / Blood by N Boissel (2005) -
Schlenk, R.F. et al. Mutations and treatment outcome in cytogenetically normal acute myeloid leukemia. N. Engl. J. Med. 358, 1909–1918 (2008).
(
10.1056/NEJMoa074306
) / N. Engl. J. Med. by RF Schlenk (2008) -
Ley, T.J. et al. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature 456, 66–72 (2008).
(
10.1038/nature07485
) / Nature by TJ Ley (2008) -
Stratton, M.R., Campbell, P.J. & Futreal, P.A. The cancer genome. Nature 458, 719–724 (2009).
(
10.1038/nature07943
) / Nature by MR Stratton (2009) -
Pleasance, E.D. et al. A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature 463, 184–190 (2010).
(
10.1038/nature08629
) / Nature by ED Pleasance (2010) -
Dalgliesh, G.L. et al. Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature 463, 360–363 (2010).
(
10.1038/nature08672
) / Nature by GL Dalgliesh (2010) -
Morin, R.D. et al. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nat. Genet. 42, 181–185 (2010).
(
10.1038/ng.518
) / Nat. Genet. by RD Morin (2010) -
Bestor, T.H. The DNA methyltransferases of mammals. Hum. Mol. Genet. 9, 2395–2402 (2000).
(
10.1093/hmg/9.16.2395
) / Hum. Mol. Genet. by TH Bestor (2000) -
Lucio-Eterovic, A. K. et al. Role for the nuclear receptor-binding SET domain protein 1 (NSD1) methyltransferase in coordinating lysine 36 methylation at histone 3 with RNA polymerase II function. Proc. Natl. Acad. Sci. USA 107, 16952–16957 (2010).
(
10.1073/pnas.1002653107
) / Proc. Natl. Acad. Sci. USA by A Lucio-Eterovic (2010) -
Zhang, S.J. et al. Gain-of-function mutation of GATA-2 in acute myeloid transformation of chronic myeloid leukemia. Proc. Natl. Acad. Sci. USA 105, 2076–2081 (2008).
(
10.1073/pnas.0711824105
) / Proc. Natl. Acad. Sci. USA by SJ Zhang (2008) -
Weng, A.P. & Aster, J.C. No T without D3: a critical role for cyclin D3 in normal and malignant precursor T cells. Cancer Cell 4, 417–418 (2003).
(
10.1016/S1535-6108(03)00305-2
) / Cancer Cell by AP Weng (2003) -
Jia, D., Jurkowska, R.Z., Zhang, X., Jeltsch, A. & Cheng, X. Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature 449, 248–251 (2007).
(
10.1038/nature06146
) / Nature by D Jia (2007) -
Ooi, S.K. et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 448, 714–717 (2007).
(
10.1038/nature05987
) / Nature by SK Ooi (2007) -
Xie, S. et al. Cloning, expression and chromosome locations of the human DNMT3 gene family. Gene 236, 87–95 (1999).
(
10.1016/S0378-1119(99)00252-8
) / Gene by S Xie (1999) -
Xie, Z.H. et al. Mutations in DNA methyltransferase DNMT3B in ICF syndrome affect its regulation by DNMT3L. Hum. Mol. Genet. 15, 1375–1385 (2006).
(
10.1093/hmg/ddl059
) / Hum. Mol. Genet. by ZH Xie (2006) -
Shah, N. & Sukumar, S. The Hox genes and their roles in oncogenesis. Nat. Rev. Cancer 10, 361–371 (2010).
(
10.1038/nrc2826
) / Nat. Rev. Cancer by N Shah (2010) -
Gross, S. et al. Cancer-associated metabolite 2-hydroxyglutarate accumulates in acute myelogenous leukemia with isocitrate dehydrogenase 1 and 2 mutations. J. Exp. Med. 207, 339–344 (2010).
(
10.1084/jem.20092506
) / J. Exp. Med. by S Gross (2010) -
Gilliland, D.G. & Tallman, M.S. Focus on acute leukemias. Cancer Cell 1, 417–420 (2002).
(
10.1016/S1535-6108(02)00081-8
) / Cancer Cell by DG Gilliland (2002) -
Mardis, E.R. et al. Recurring mutations found by sequencing an acute myeloid leukemia genome. N. Engl. J. Med. 361, 1058–1066 (2009).
(
10.1056/NEJMoa0903840
) / N. Engl. J. Med. by ER Mardis (2009) -
Ley, T.J. et al. DNMT3A mutations in acute myeloid leukemia. N. Engl. J. Med. 363, 2424–2433 (2010).
(
10.1056/NEJMoa1005143
) / N. Engl. J. Med. by TJ Ley (2010) -
Yamashita, Y. et al. Array-based genomic resequencing of human leukemia. Oncogene 29, 3723–3731 (2010).
(
10.1038/onc.2010.117
) / Oncogene by Y Yamashita (2010) -
El-Maarri, O. et al. A systematic search for DNA methyltransferase polymorphisms reveals a rare DNMT3L variant associated with subtelomeric hypomethylation. Hum. Mol. Genet. 18, 1755–1768 (2009).
(
10.1093/hmg/ddp088
) / Hum. Mol. Genet. by O El-Maarri (2009) -
Jones, P.A. DNA methylation and cancer. Oncogene 21, 5358–5360 (2002).
(
10.1038/sj.onc.1205597
) / Oncogene by PA Jones (2002) -
Okano, M., Bell, D.W., Haber, D.A. & Li, E. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99, 247–257 (1999).
(
10.1016/S0092-8674(00)81656-6
) / Cell by M Okano (1999) -
Xu, G.L. et al. Chromosome instability and immunodeficiency syndrome caused by mutations in a DNA methyltransferase gene. Nature 402, 187–191 (1999).
(
10.1038/46052
) / Nature by GL Xu (1999) -
Bullinger, L. et al. Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia. N. Engl. J. Med. 350, 1605–1616 (2004).
(
10.1056/NEJMoa031046
) / N. Engl. J. Med. by L Bullinger (2004) -
Eklund, E.A. The role of HOX genes in malignant myeloid disease. Curr. Opin. Hematol. 14, 85–89 (2007).
(
10.1097/MOH.0b013e32801684b6
) / Curr. Opin. Hematol. by EA Eklund (2007) -
Wu, H. et al. Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes. Science 329, 444–448 (2010).
(
10.1126/science.1190485
) / Science by H Wu (2010) -
Dang, L. et al. Cancer-associated IDH1 mutations produce 2-hydroxyglutarate. Nature 462, 739–744 (2009).
(
10.1038/nature08617
) / Nature by L Dang (2009) -
Panarello, C., Rosanda, C. & Morerio, C. Cryptic translocation t(5;11)(q35;p15.5) with involvement of the NSD1 and NUP98 genes without 5q deletion in childhood acute myeloid leukemia. Genes Chromosom. Cancer 35, 277–281 (2002).
(
10.1002/gcc.10119
) / Genes Chromosom. Cancer by C Panarello (2002) -
Ng, S.B. et al. Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome. Nat. Genet. 42, 790–793 (2010).
(
10.1038/ng.646
) / Nat. Genet. by SB Ng (2010) -
Nikoloski, G. et al. Somatic mutations of the histone methyltransferase gene EZH2 in myelodysplastic syndromes. Nat. Genet. 42, 665–667 (2010).
(
10.1038/ng.620
) / Nat. Genet. by G Nikoloski (2010) -
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754–1760 (2009).
(
10.1093/bioinformatics/btp324
) / Bioinformatics by H Li (2009) -
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009).
(
10.1093/bioinformatics/btp352
) / Bioinformatics by H Li (2009) -
Mullighan, C.G. et al. Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature 446, 758–764 (2007).
(
10.1038/nature05690
) / Nature by CG Mullighan (2007) -
Adzhubei, I.A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248–249 (2010).
(
10.1038/nmeth0410-248
) / Nat. Methods by IA Adzhubei (2010) -
O'=Gara, M., Klimasauskas, S., Roberts, R.J. & Cheng, X. Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes. J. Mol. Biol. 261, 634–645 (1996).
(
10.1006/jmbi.1996.0489
) / J. Mol. Biol. by M O'=Gara (1996) -
Garrett, M. et al. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 19, 1639–1662 (1998).
(
10.1002/(SICI)1096-987X(19981115)19:14<1639::AID-JCC10>3.0.CO;2-B
) / J. Comput. Chem. by M Garrett (1998)
Dates
Type | When |
---|---|
Created | 14 years, 5 months ago (March 13, 2011, 2:40 p.m.) |
Deposited | 2 years, 3 months ago (May 18, 2023, 4:12 p.m.) |
Indexed | 1 week ago (Aug. 19, 2025, 6:32 a.m.) |
Issued | 14 years, 5 months ago (March 13, 2011) |
Published | 14 years, 5 months ago (March 13, 2011) |
Published Online | 14 years, 5 months ago (March 13, 2011) |
Published Print | 14 years, 4 months ago (April 1, 2011) |
@article{Yan_2011, title={Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia}, volume={43}, ISSN={1546-1718}, url={http://dx.doi.org/10.1038/ng.788}, DOI={10.1038/ng.788}, number={4}, journal={Nature Genetics}, publisher={Springer Science and Business Media LLC}, author={Yan, Xiao-Jing and Xu, Jie and Gu, Zhao-Hui and Pan, Chun-Ming and Lu, Gang and Shen, Yang and Shi, Jing-Yi and Zhu, Yong-Mei and Tang, Lin and Zhang, Xiao-Wei and Liang, Wen-Xue and Mi, Jian-Qing and Song, Huai-Dong and Li, Ke-Qin and Chen, Zhu and Chen, Sai-Juan}, year={2011}, month=mar, pages={309–315} }