Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
10.1038/nbt1005
Crossref journal-article
Springer Science and Business Media LLC
Nature Biotechnology (297)
Bibliography

Blagoev, B., Ong, S.-E., Kratchmarova, I., & Mann, M. (2004). Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nature Biotechnology, 22(9), 1139–1145.

Authors 4
  1. Blagoy Blagoev (first)
  2. Shao-En Ong (additional)
  3. Irina Kratchmarova (additional)
  4. Matthias Mann (additional)
References 34 Referenced 600
  1. Pawson, T. & Nash, P. Assembly of cell regulatory systems through protein interaction domains. Science 300, 445–452 (2003). (10.1126/science.1083653) / Science by T Pawson (2003)
  2. Schlessinger, J. Cell signaling by receptor tyrosine kinases. Cell 103, 211–225 (2000). (10.1016/S0092-8674(00)00114-8) / Cell by J Schlessinger (2000)
  3. Blume-Jensen, P. & Hunter, T. Oncogenic kinase signalling. Nature 411, 355–365 (2001). (10.1038/35077225) / Nature by P Blume-Jensen (2001)
  4. Ficarro, S.B. et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301–305 (2002). (10.1038/nbt0302-301) / Nat. Biotechnol. by SB Ficarro (2002)
  5. Salomon, A.R. et al. Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry. Proc. Natl. Acad. Sci. USA 100, 443–448 (2003). (10.1073/pnas.2436191100) / Proc. Natl. Acad. Sci. USA by AR Salomon (2003)
  6. Gygi, S.P. et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994–999 (1999). (10.1038/13690) / Nat. Biotechnol. by SP Gygi (1999)
  7. Lill, J. Proteomic tools for quantitation by mass spectrometry. Mass Spectrom. Rev. 22, 182–194 (2003). (10.1002/mas.10048) / Mass Spectrom. Rev. by J Lill (2003)
  8. Aebersold, R. & Mann, M. Mass spectrometry-based proteomics. Nature 422, 198–207 (2003). (10.1038/nature01511) / Nature by R Aebersold (2003)
  9. Ranish, J.A. et al. The study of macromolecular complexes by quantitative proteomics. Nat. Genet. 33, 349–355 (2003). (10.1038/ng1101) / Nat. Genet. by JA Ranish (2003)
  10. Blagoev, B. et al. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat. Biotechnol. 21, 315–318 (2003). (10.1038/nbt790) / Nat. Biotechnol. by B Blagoev (2003)
  11. Ong, S.E. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376–386 (2002). (10.1074/mcp.M200025-MCP200) / Mol. Cell. Proteomics by SE Ong (2002)
  12. Ong, S.E., Kratchmarova, I. & Mann, M. Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). J. Proteome Res. 2, 173–181 (2003). (10.1021/pr0255708) / J. Proteome Res. by SE Ong (2003)
  13. Pandey, A. et al. Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways. J. Biol. Chem. 275, 38633–38639 (2000). (10.1074/jbc.M007849200) / J. Biol. Chem. by A Pandey (2000)
  14. Pandey, A. et al. Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet- derived growth factor receptors. Proc. Natl. Acad. Sci. USA 97, 179–184 (2000). (10.1073/pnas.97.1.179) / Proc. Natl. Acad. Sci. USA by A Pandey (2000)
  15. Pandey, A. et al. Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases. Oncogene 21, 8029–8036 (2002). (10.1038/sj.onc.1205988) / Oncogene by A Pandey (2002)
  16. Waterman, H. & Yarden, Y. Molecular mechanisms underlying endocytosis and sorting of ErbB receptor tyrosine kinases. FEBS Lett. 490, 142–152 (2001). (10.1016/S0014-5793(01)02117-2) / FEBS Lett. by H Waterman (2001)
  17. Dikic, I. & Giordano, S. Negative receptor signalling. Curr. Opin. Cell Biol. 15, 128–135 (2003). (10.1016/S0955-0674(03)00004-8) / Curr. Opin. Cell Biol. by I Dikic (2003)
  18. Bache, K.G., Raiborg, C., Mehlum, A. & Stenmark, H. STAM and Hrs are subunits of a multivalent ubiquitin-binding complex on early endosomes. J. Biol. Chem. 278, 12513–12521 (2003). (10.1074/jbc.M210843200) / J. Biol. Chem. by KG Bache (2003)
  19. Dong, C., Waters, S.B., Holt, K.H. & Pessin, J.E. SOS phosphorylation and disassociation of the Grb2-SOS complex by the ERK and JNK signaling pathways. J. Biol. Chem. 271, 6328–6332 (1996). (10.1074/jbc.271.11.6328) / J. Biol. Chem. by C Dong (1996)
  20. De Corte, V. et al. Gelsolin-induced epithelial cell invasion is dependent on Ras-Rac signaling. EMBO J. 21, 6781–6790 (2002). (10.1093/emboj/cdf680) / EMBO J. by V De Corte (2002)
  21. Riggins, R.B., Quilliam, L.A. & Bouton, A.H. Synergistic promotion of c-Src activation and cell migration by Cas and AND-34/BCAR3. J. Biol. Chem. 278, 28264–28273 (2003). (10.1074/jbc.M303535200) / J. Biol. Chem. by RB Riggins (2003)
  22. Brinkman, A., van der Flier, S., Kok, E.M. & Dorssers, L.C. BCAR1 a human homologue of the adapter protein p130Cas, and antiestrogen resistance in breast cancer cells. J. Natl. Cancer Inst. 92, 112–120 (2000). (10.1093/jnci/92.2.112) / J. Natl. Cancer Inst. by A Brinkman (2000)
  23. van Agthoven, T. et al. Identification of BCAR3 by a random search for genes involved in antiestrogen resistance of human breast cancer cells. EMBO J. 17, 2799–2808 (1998). (10.1093/emboj/17.10.2799) / EMBO J. by T van Agthoven (1998)
  24. Ostareck-Lederer, A. et al. c-Src-mediated phosphorylation of hnRNP K drives translational activation of specifically silenced mRNAs. Mol. Cell. Biol. 22, 4535–4543 (2002). (10.1128/MCB.22.13.4535-4543.2002) / Mol. Cell. Biol. by A Ostareck-Lederer (2002)
  25. Bach, I. The LIM domain: regulation by association. Mech. Dev. 91, 5–17 (2000). (10.1016/S0925-4773(99)00314-7) / Mech. Dev. by I Bach (2000)
  26. Wu, R. et al. Specificity of LIM domain interactions with receptor tyrosine kinases. J. Biol. Chem. 271, 15934–15941 (1996). (10.1074/jbc.271.27.15934) / J. Biol. Chem. by R Wu (1996)
  27. Seykora, J.T., Mei, L., Dotto, G.P. & Stein, P.L. 'Srcasm: a novel Src activating and signaling molecule. J. Biol. Chem. 277, 2812–2822 (2002). (10.1074/jbc.M106813200) / J. Biol. Chem. by JT Seykora (2002)
  28. Lohi, O., Poussu, A., Mao, Y., Quiocho, F. & Lehto, V.P. VHS domain–a longshoreman of vesicle lines. FEBS Lett. 513, 19–23 (2002). (10.1016/S0014-5793(01)03287-2) / FEBS Lett. by O Lohi (2002)
  29. Trompouki, E. et al. CYLD is a deubiquitinating enzyme that negatively regulates NF-kappaB activation by TNFR family members. Nature 424, 793–796 (2003). (10.1038/nature01803) / Nature by E Trompouki (2003)
  30. Kovalenko, A. et al. The tumour suppressor CYLD negatively regulates NF-kappaB signalling by deubiquitination. Nature 424, 801–805 (2003). (10.1038/nature01802) / Nature by A Kovalenko (2003)
  31. Brummelkamp, T.R., Nijman, S.M., Dirac, A.M. & Bernards, R. Loss of the cylindromatosis tumour suppressor inhibits apoptosis by activating NF-kappaB. Nature 424, 797–801 (2003). (10.1038/nature01811) / Nature by TR Brummelkamp (2003)
  32. Wiley, H.S., Shvartsman, S.Y. & Lauffenburger, D.A. Computational modeling of the EGF-receptor system: a paradigm for systems biology. Trends Cell Biol. 13, 43–50 (2003). (10.1016/S0962-8924(02)00009-0) / Trends Cell Biol. by HS Wiley (2003)
  33. Shevchenko, A., Wilm, M., Vorm, O. & Mann, M. Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal. Chem. 68, 850–858 (1996). (10.1021/ac950914h) / Anal. Chem. by A Shevchenko (1996)
  34. Rappsilber, J., Ishihama, Y. & Mann, M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem. 75, 663–670 (2003). (10.1021/ac026117i) / Anal. Chem. by J Rappsilber (2003)
Dates
Type When
Created 21 years ago (Aug. 16, 2004, 12:33 p.m.)
Deposited 2 years, 3 months ago (May 18, 2023, 3:32 p.m.)
Indexed 1 month, 3 weeks ago (July 2, 2025, 3:08 p.m.)
Issued 21 years ago (Aug. 15, 2004)
Published 21 years ago (Aug. 15, 2004)
Published Online 21 years ago (Aug. 15, 2004)
Published Print 20 years, 11 months ago (Sept. 1, 2004)
Funders 0

None

@article{Blagoev_2004, title={Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics}, volume={22}, ISSN={1546-1696}, url={http://dx.doi.org/10.1038/nbt1005}, DOI={10.1038/nbt1005}, number={9}, journal={Nature Biotechnology}, publisher={Springer Science and Business Media LLC}, author={Blagoev, Blagoy and Ong, Shao-En and Kratchmarova, Irina and Mann, Matthias}, year={2004}, month=aug, pages={1139–1145} }