Crossref
journal-article
Springer Science and Business Media LLC
Nature Biotechnology (297)
References
38
Referenced
219
- Mattos, C. and Ringe, D. 1993. Multiple binding modes, pp. 226–254 in 3D QSAR in Drug Design—Theory, Methods and Applications. Kubinyi, H. (ed.). ESCOM Science Publishers, Leiden, The Netherlands. / 3D QSAR in Drug Design—Theory, Methods and Applications by C Mattos (1993)
-
Rydel, T.J., Tulinsky, A., Bode, W., and Huber, R. 1991. Refined structure of the hirudin thrombin complex. J. Mol. Biol. 221: 583–601.
(
10.1016/0022-2836(91)80074-5
) / J. Mol. Biol. by TJ Rydel (1991) -
Qiu, X., Padmanabhan, K.P., Carperos, V.E., Tulinsky, A., Kline, T., Maraganore, J.M., and Fenton, J.W. II 1992. Structure of hirulog 3-thrombin complex and nature of the S′ subsites of substrates and inhibitors. Biochemistry 31: 11689–11697.
(
10.1021/bi00162a004
) / Biochemistry by X Qiu (1992) -
Alien, K., Bellamacina, C.R., Ding, X., Jeffery, C., Mattos, C., Petsko, G.A., and Ringe, D. 1996. An experimental approach to mapping the binding surfaces of crystalline proteins. J. Phys. Chem. 100: 2605–2611.
(
10.1021/jp952516o
) / J. Phys. Chem. by K Alien (1996) -
Meyer, E., Cole, G., Radhakrishnan, R., and Epp, O. 1988. Structure of native porcine pancreatic elastase at 1. 65 Å resolution. Acta Cryst. B44: 26–38.
(
10.1107/S0108768187007559
) / Acta Cryst. by E Meyer (1988) - Kubinyi, H. 1993. The third dimension in QSAR: An introduction, pp. 1–10 in 3D QSAR in Drug—Theory, Methods and Applications. Kubinyi, H. (ed.). ESCOM Science Publishers, Leiden, The Netherlands. / 3D QSAR in Drug—Theory, Methods and Applications by H Kubinyi (1993)
-
Atlas, D. 1975. The active site of porcine pancreatic elastase. J. Mol. Biol. 93: 39–53.
(
10.1016/0022-2836(75)90358-7
) / J. Mol. Biol. by D Atlas (1975) -
Renaud, A., Lestienne, P., Hughes, D.L., Bieth, J.G., and Dimicoli, J.-L. 1983. Mapping of the S′ subsites of porcine pancreatic and human leucocyte elastases. J. Biol. Chem. 258: 8312–8316.
(
10.1016/S0021-9258(20)82066-3
) / J. Biol. Chem. by A Renaud (1983) -
Mattos, C., Rasmussen, B., Ding, X., Petsko, G.A., and Ringe, D. 1994. Analogous inhibitors of elastase do not always bind analogously. Nature Struct Biol. 1: 55–58.
(
10.1038/nsb0194-55
) / Nature Struct Biol. by C Mattos (1994) -
Mattos, C., Giammona, D.A., Petsko, G.A., and Ringe, D. 1995. Structural analysis of the active site of porcine pancreatic elastase based on the X-ray crystal structures of complexes with trifluoroacetyl-dipeptide-anilide inhibitors. Biochemistry 34: 3193–3203.
(
10.1021/bi00010a008
) / Biochemistry by C Mattos (1995) -
Wolfson, A.J., Kanaoka, M., Lau, F., and Ringe, D. 1993. Modularity of protein function: Cimeric interleukin 1 βs containing specific protease inhibitor loops retain function of both molecules. Biochemistry 32: 5327–5331.
(
10.1021/bi00071a007
) / Biochemistry by AJ Wolfson (1993) -
Kuntz, I.D., Meng, E.C., and Shoichet, B.K. 1994. Structure-based molecular design. Acc. Chem. Res. 27: 117–123.
(
10.1021/ar00041a001
) / Acc. Chem. Res. by ID Kuntz (1994) -
Kuntz, I.D., Blaney, J.M., Oatley, S.J., Langridge, R., and Ferrin, T.E. 1982. A geometric approach to macromolecule-ligand interactions. J. Mol. Biol. 161: 269–288.
(
10.1016/0022-2836(82)90153-X
) / J. Mol. Biol. by ID Kuntz (1982) -
Goodford, P.J. 1985. A computational approach for determining energetically favorable binding sites on biologically important macromolecules (GRID). J. Med. Chem. 28: 849–857.
(
10.1021/jm00145a002
) / J. Med. Chem. by PJ Goodford (1985) -
Miranker, A. and Karplus, M. 1991. Functionality maps of binding sites: A multiple copy simultaneous search method (MCSS). Proteins 11: 29–34.
(
10.1002/prot.340110104
) / Proteins by A Miranker (1991) -
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., and Karplus, M. 1983. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. Journal of Computational Chemistry 4: 187–217.
(
10.1002/jcc.540040211
) / Journal of Computational Chemistry by BR Brooks (1983) -
Caflisch, A., Niederer, P., and Anliker, M., 1992. Carlo-docking of oligopep-tides to proteins. Proteins: Struct, Funct., and Genet 13: 223–230.
(
10.1002/prot.340130305
) / Proteins: Struct, Funct., and Genet by A Caflisch (1992) -
Caflisch, A., Niederer, P., and Anliker, M., 1992. Monte Carlo-minimization with thermalization for global optimization of polypeptide conformations in cartesian coordinate space. Proteins: Struct, Funct, and Genet 14: 102–109.
(
10.1002/prot.340140111
) / Proteins: Struct, Funct, and Genet by A Caflisch (1992) -
Caflisch, A., Miranker, A., and Karplus, M. 1993. Multiple copy simultaneous search and construction of ligands in binding sites: Application to inhibitors of HIV-1 aspartic proteinase. J. Med. Chem. 36: 2142–2167.
(
10.1021/jm00067a013
) / J. Med. Chem. by A Caflisch (1993) -
Wlodawer, A., Deisenhofer, J., and Huber, R. 1987. Comparison of two highly refined structures of bovine pancreatic trypsin inhibitor. J. Mol. Biol. 193: 145–156.
(
10.1016/0022-2836(87)90633-4
) / J. Mol. Biol. by A Wlodawer (1987) -
Wlodawer, A., Nachman, J., and Gilliland, G.L. 1987. Structure of form III crystals of bovine pancreatic trypsin inhibitor. J. Mol. Biol. 198: 469–480.
(
10.1016/0022-2836(87)90294-4
) / J. Mol. Biol. by A Wlodawer (1987) -
Karplus, P.A. and Faerman, C. 1994. Ordered water in macromolecular structure. Current Opinion in Structural Biology 4: 770–776.
(
10.1016/S0959-440X(94)90178-3
) / Current Opinion in Structural Biology by PA Karplus (1994) -
Caspar, L.D. and Badger, J. 1991. Plasticity of crystalline proteins. Current Biology 1: 877–882.
(
10.1016/0959-440X(91)90081-4
) / Current Biology by LD Caspar (1991) -
Herron, J.N., Terry, A.H., Johnston, S., He, X., Guddat, L.W., Voss, E.W. Jr., and Edmundson, A.B. 1994. High resolution structures of the 4-4-20 Fab-fluorescein complex in two solvent systems: Effects of solvent on structure and antigen-binding affinity. Biophysical Journal 67: 2167–2183.
(
10.1016/S0006-3495(94)80738-6
) / Biophysical Journal by JN Herron (1994) -
Zhang, X.-J. and Matthews, B.W. 1994. Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme. Protein Science 3: 1031–1039.
(
10.1002/pro.5560030705
) / Protein Science by X-J Zhang (1994) -
Otting, G., Liepinsh, E., and Wuthrich, K. 1991. Protein hydration in aqueous solution. Science 254: 974–980.
(
10.1126/science.1948083
) / Science by G Otting (1991) -
Ernst, J.A., Clubb, R.T., Huan-Xiang, X., Gronenborn, A.M., and Clore, G.M. 1995. Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR. Science 267: 1813–1817.
(
10.1126/science.7892604
) / Science by JA Ernst (1995) -
Teeter, M.M. 1991. Water-protein interactions: Theory and experiment. Annu. Rev. Biophys. Biophys. Chem. 20: 577–600.
(
10.1146/annurev.bb.20.060191.003045
) / Annu. Rev. Biophys. Biophys. Chem. by MM Teeter (1991) -
Roe, S.M. and Teeter, M.M. 1993. Patterns for prediction of hydration around polar residues in proteins. J. Mol. Biol. 229: 419–427.
(
10.1006/jmbi.1993.1043
) / J. Mol. Biol. by SM Roe (1993) - Jiang, J.-S. and Brunger, A.T. 1994. Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. J. Mol. Biol. 243: 100–115. / Solvation properties of penicillopepsin and neuraminidase crystal structures by J-S Jiang (1994)
-
Levitt, M. and Park, B.H. 1993. Water: now you see it, now you don't. Structure 1: 223–226.
(
10.1016/0969-2126(93)90011-5
) / Structure by M Levitt (1993) - Mattos, C., Bellamacina, C.R., Peisach, E., Stanton, M., Griffith, D., Vitkup, D., Petsko, G.A., and Ringe, D. Application of the multiple solvent crystal structure method to porcine pancreatic elastase. Manuscript in preparation.
-
Ringe, D. 1995. What makes a binding site a binding site? Current Opinion in Structural Biology 5: 825–829.
(
10.1016/0959-440X(95)80017-4
) / Current Opinion in Structural Biology by D Ringe (1995) -
Chervenak, M.C. and Toone, E.J. 1994. A direct measure of the contribution of solvent reorganization to the enthalpy of ligand binding. J. Am. Chem. Soc. 116: 10533–10539.
(
10.1021/ja00102a021
) / J. Am. Chem. Soc. by MC Chervenak (1994) -
Clackson, T. and Wells, J.A. 1995. A hot spot of binding energy in a hormone-receptor interface. Science 267: 383–386.
(
10.1126/science.7529940
) / Science by T Clackson (1995) -
Takahashi, L.H., Radhakrishnan, R., Rosenfield, R.E., Meyer, E.F., Trainor, D.A., and Stein, M. 1988. X-ray diffraction analysis of the inhibition of porcine pancreatic elastase by a peptidyl trifluoromethylketone. J. Mol. Biol. 201: 423–428.
(
10.1016/0022-2836(88)90148-9
) / J. Mol. Biol. by LH Takahashi (1988) -
Peisach, E., Casebier, D., Gallion, S.L., Furth, P., Petsko, G.A., Hogan, J.C. Jr., and Ringe, D. 1995. Interaction of a peptidomimetic aminimide inhibitor with elastase. Science 269: 66–69.
(
10.1126/science.7604279
) / Science by E Peisach (1995) -
Kraulis, P.J. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24: 946–950.
(
10.1107/S0021889891004399
) / J. Appl. Crystallogr. by PJ Kraulis (1991)
Dates
Type | When |
---|---|
Created | 21 years ago (Aug. 18, 2004, 6:21 p.m.) |
Deposited | 2 years, 3 months ago (May 18, 2023, 3:50 p.m.) |
Indexed | 3 weeks, 3 days ago (Aug. 12, 2025, 5:29 p.m.) |
Issued | 29 years, 4 months ago (May 1, 1996) |
Published | 29 years, 4 months ago (May 1, 1996) |
Published Print | 29 years, 4 months ago (May 1, 1996) |
@article{Mattos_1996, title={Locating and characterizing binding sites on proteins}, volume={14}, ISSN={1546-1696}, url={http://dx.doi.org/10.1038/nbt0596-595}, DOI={10.1038/nbt0596-595}, number={5}, journal={Nature Biotechnology}, publisher={Springer Science and Business Media LLC}, author={Mattos, Carla and Ringe, Dagmar}, year={1996}, month=may, pages={595–599} }