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Yoshida, K., Sanada, M., Shiraishi, Y., Nowak, D., Nagata, Y., Yamamoto, R., Sato, Y., Sato-Otsubo, A., Kon, A., Nagasaki, M., Chalkidis, G., Suzuki, Y., Shiosaka, M., Kawahata, R., Yamaguchi, T., Otsu, M., Obara, N., Sakata-Yanagimoto, M., Ishiyama, K., … Ogawa, S. (2011). Frequent pathway mutations of splicing machinery in myelodysplasia. Nature, 478(7367), 64–69.

Authors 32
  1. Kenichi Yoshida (first)
  2. Masashi Sanada (additional)
  3. Yuichi Shiraishi (additional)
  4. Daniel Nowak (additional)
  5. Yasunobu Nagata (additional)
  6. Ryo Yamamoto (additional)
  7. Yusuke Sato (additional)
  8. Aiko Sato-Otsubo (additional)
  9. Ayana Kon (additional)
  10. Masao Nagasaki (additional)
  11. George Chalkidis (additional)
  12. Yutaka Suzuki (additional)
  13. Masashi Shiosaka (additional)
  14. Ryoichiro Kawahata (additional)
  15. Tomoyuki Yamaguchi (additional)
  16. Makoto Otsu (additional)
  17. Naoshi Obara (additional)
  18. Mamiko Sakata-Yanagimoto (additional)
  19. Ken Ishiyama (additional)
  20. Hiraku Mori (additional)
  21. Florian Nolte (additional)
  22. Wolf-Karsten Hofmann (additional)
  23. Shuichi Miyawaki (additional)
  24. Sumio Sugano (additional)
  25. Claudia Haferlach (additional)
  26. H. Phillip Koeffler (additional)
  27. Lee-Yung Shih (additional)
  28. Torsten Haferlach (additional)
  29. Shigeru Chiba (additional)
  30. Hiromitsu Nakauchi (additional)
  31. Satoru Miyano (additional)
  32. Seishi Ogawa (additional)
References 37 Referenced 1,743
  1. Corey, S. J. et al. Myelodysplastic syndromes: the complexity of stem-cell diseases. Nature Rev. Cancer 7, 118–129 (2007) (10.1038/nrc2047) / Nature Rev. Cancer by SJ Corey (2007)
  2. Ma, X., Does, M., Raza, A. & Mayne, S. T. Myelodysplastic syndromes: incidence and survival in the United States. Cancer 109, 1536–1542 (2007) (10.1002/cncr.22570) / Cancer by X Ma (2007)
  3. Bejar, R., Levine, R. & Ebert, B. L. Unraveling the molecular pathophysiology of myelodysplastic syndromes. J. Clin. Oncol. 29, 504–515 (2011) (10.1200/JCO.2010.31.1175) / J. Clin. Oncol. by R Bejar (2011)
  4. Sanada, M. et al. Gain-of-function of mutated C-CBL tumour suppressor in myeloid neoplasms. Nature 460, 904–908 (2009) (10.1038/nature08240) / Nature by M Sanada (2009)
  5. Campbell, P. J. et al. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nature Genet. 40, 722–729 (2008) (10.1038/ng.128) / Nature Genet. by PJ Campbell (2008)
  6. Chapman, M. A. et al. Initial genome sequencing and analysis of multiple myeloma. Nature 471, 467–472 (2011) (10.1038/nature09837) / Nature by MA Chapman (2011)
  7. Lee, W. et al. The mutation spectrum revealed by paired genome sequences from a lung cancer patient. Nature 465, 473–477 (2010) (10.1038/nature09004) / Nature by W Lee (2010)
  8. Ley, T. J. et al. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature 456, 66–72 (2008) (10.1038/nature07485) / Nature by TJ Ley (2008)
  9. Metzker, M. L. Sequencing technologies — the next generation. Nature Rev. Genet. 11, 31–46 (2010) (10.1038/nrg2626) / Nature Rev. Genet. by ML Metzker (2010)
  10. Shendure, J. & Ji, H. Next-generation DNA sequencing. Nature Biotechnol. 26, 1135–1145 (2008) (10.1038/nbt1486) / Nature Biotechnol. by J Shendure (2008)
  11. Shah, S. P. et al. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature 461, 809–813 (2009) (10.1038/nature08489) / Nature by SP Shah (2009)
  12. Varela, I. et al. Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature 469, 539–542 (2011) (10.1038/nature09639) / Nature by I Varela (2011)
  13. Ley, T. J. et al. DNMT3A mutations in acute myeloid leukemia. N. Engl. J. Med. 363, 2424–2433 (2010) (10.1056/NEJMoa1005143) / N. Engl. J. Med. by TJ Ley (2010)
  14. Mardis, E. R. et al. Recurring mutations found by sequencing an acute myeloid leukemia genome. N. Engl. J. Med. 361, 1058–1066 (2009) (10.1056/NEJMoa0903840) / N. Engl. J. Med. by ER Mardis (2009)
  15. Yan, X. J. et al. Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia. Nature Genet. 43, 309–315 (2011) (10.1038/ng.788) / Nature Genet. by XJ Yan (2011)
  16. Puente, X. S. et al. Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature 475, 101–105 (2011) (10.1038/nature10113) / Nature by XS Puente (2011)
  17. Nannya, Y. et al. A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res. 65, 6071–6079 (2005) (10.1158/0008-5472.CAN-05-0465) / Cancer Res. by Y Nannya (2005)
  18. Yamamoto, G. et al. Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of Affymetrix single-nucleotide-polymorphism genotyping microarrays. Am. J. Hum. Genet. 81, 114–126 (2007) (10.1086/518809) / Am. J. Hum. Genet. by G Yamamoto (2007)
  19. Wahl, M. C., Will, C. L. & Luhrmann, R. The spliceosome: design principles of a dynamic RNP machine. Cell 136, 701–718 (2009) (10.1016/j.cell.2009.02.009) / Cell by MC Wahl (2009)
  20. Tronchère, H., Wang, J. & Fu, X. D. A protein related to splicing factor U2AF35 that interacts with U2AF65 and SR proteins in splicing of pre-mRNA. Nature 388, 397–400 (1997) (10.1038/41137) / Nature by H Tronchère (1997)
  21. Bevilacqua, L. et al. A population-specific HTR2B stop codon predisposes to severe impulsivity. Nature 468, 1061–1066 (2010) (10.1038/nature09629) / Nature by L Bevilacqua (2010)
  22. Calvo, S. E. et al. High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency. Nature Genet. 42, 851–858 (2010) (10.1038/ng.659) / Nature Genet. by SE Calvo (2010)
  23. Haase, D. et al. New insights into the prognostic impact of the karyotype in MDS and correlation with subtypes: evidence from a core dataset of 2124 patients. Blood 110, 4385–4395 (2007) (10.1182/blood-2007-03-082404) / Blood by D Haase (2007)
  24. Xiao, R. et al. Splicing regulator SC35 is essential for genomic stability and cell proliferation during mammalian organogenesis. Mol. Cell. Biol. 27, 5393–5402 (2007) (10.1128/MCB.00288-07) / Mol. Cell. Biol. by R Xiao (2007)
  25. Morin, R. D. et al. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nature Genet. 42, 181–185 (2010) (10.1038/ng.518) / Nature Genet. by RD Morin (2010)
  26. Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA 102, 15545–15550 (2005) (10.1073/pnas.0506580102) / Proc. Natl Acad. Sci. USA by A Subramanian (2005)
  27. Maquat, L. E. Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nature Rev. Mol. Cell Biol. 5, 89–99 (2004) (10.1038/nrm1310) / Nature Rev. Mol. Cell Biol. by LE Maquat (2004)
  28. Ema, H. et al. Adult mouse hematopoietic stem cells: purification and single-cell assays. Nature Protocols 1, 2979–2987 (2007) (10.1038/nprot.2006.447) / Nature Protocols by H Ema (2007)
  29. Chen, M. & Manley, J. L. Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches. Nature Rev. Mol. Cell Biol. 10, 741–754 (2009) (10.1038/nrm2777) / Nature Rev. Mol. Cell Biol. by M Chen (2009)
  30. Ni, J. Z. et al. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev. 21, 708–718 (2007) (10.1101/gad.1525507) / Genes Dev. by JZ Ni (2007)
  31. He, H. et al. Mutations in U4atac snRNA, a component of the minor spliceosome, in the developmental disorder MOPD I. Science 332, 238–240 (2011) (10.1126/science.1200587) / Science by H He (2011)
  32. Edery, P. et al. Association of TALS developmental disorder with defect in minor splicing component U4atac snRNA. Science 332, 240–243 (2011) (10.1126/science.1202205) / Science by P Edery (2011)
  33. David, C. J. & Manley, J. L. Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev. 24, 2343–2364 (2010) (10.1101/gad.1973010) / Genes Dev. by CJ David (2010)
  34. Pajares, M. J. et al. Alternative splicing: an emerging topic in molecular and clinical oncology. Lancet Oncol. 8, 349–357 (2007) (10.1016/S1470-2045(07)70104-3) / Lancet Oncol. by MJ Pajares (2007)
  35. Shen, H., Zheng, X., Luecke, S. & Green, M. R. The U2AF35-related protein Urp contacts the 3′ splice site to promote U12-type intron splicing and the second step of U2-type intron splicing. Genes Dev. 24, 2389–2394 (2010) (10.1101/gad.1974810) / Genes Dev. by H Shen (2010)
  36. Barlow, J. L. et al. A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q− syndrome. Nature Med. 16, 59–66 (2010) (10.1038/nm.2063) / Nature Med. by JL Barlow (2010)
  37. Ebert, B. L. et al. Identification of RPS14 as a 5q− syndrome gene by RNA interference screen. Nature 451, 335–339 (2008) (10.1038/nature06494) / Nature by BL Ebert (2008)
Dates
Type When
Created 13 years, 11 months ago (Sept. 9, 2011, 5:30 p.m.)
Deposited 2 years, 3 months ago (May 18, 2023, 1:55 p.m.)
Indexed 43 minutes ago (Aug. 21, 2025, 12:56 p.m.)
Issued 13 years, 11 months ago (Sept. 11, 2011)
Published 13 years, 11 months ago (Sept. 11, 2011)
Published Online 13 years, 11 months ago (Sept. 11, 2011)
Published Print 13 years, 10 months ago (Oct. 1, 2011)
Funders 0

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@article{Yoshida_2011, title={Frequent pathway mutations of splicing machinery in myelodysplasia}, volume={478}, ISSN={1476-4687}, url={http://dx.doi.org/10.1038/nature10496}, DOI={10.1038/nature10496}, number={7367}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Yoshida, Kenichi and Sanada, Masashi and Shiraishi, Yuichi and Nowak, Daniel and Nagata, Yasunobu and Yamamoto, Ryo and Sato, Yusuke and Sato-Otsubo, Aiko and Kon, Ayana and Nagasaki, Masao and Chalkidis, George and Suzuki, Yutaka and Shiosaka, Masashi and Kawahata, Ryoichiro and Yamaguchi, Tomoyuki and Otsu, Makoto and Obara, Naoshi and Sakata-Yanagimoto, Mamiko and Ishiyama, Ken and Mori, Hiraku and Nolte, Florian and Hofmann, Wolf-Karsten and Miyawaki, Shuichi and Sugano, Sumio and Haferlach, Claudia and Koeffler, H. Phillip and Shih, Lee-Yung and Haferlach, Torsten and Chiba, Shigeru and Nakauchi, Hiromitsu and Miyano, Satoru and Ogawa, Seishi}, year={2011}, month=sep, pages={64–69} }