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Nègre, N., Brown, C. D., Ma, L., Bristow, C. A., Miller, S. W., Wagner, U., Kheradpour, P., Eaton, M. L., Loriaux, P., Sealfon, R., Li, Z., Ishii, H., Spokony, R. F., Chen, J., Hwang, L., Cheng, C., Auburn, R. P., Davis, M. B., Domanus, M., … White, K. P. (2011). A cis-regulatory map of the Drosophila genome. Nature, 471(7339), 527–531.

Authors 40
  1. Nicolas Nègre (first)
  2. Christopher D. Brown (additional)
  3. Lijia Ma (additional)
  4. Christopher Aaron Bristow (additional)
  5. Steven W. Miller (additional)
  6. Ulrich Wagner (additional)
  7. Pouya Kheradpour (additional)
  8. Matthew L. Eaton (additional)
  9. Paul Loriaux (additional)
  10. Rachel Sealfon (additional)
  11. Zirong Li (additional)
  12. Haruhiko Ishii (additional)
  13. Rebecca F. Spokony (additional)
  14. Jia Chen (additional)
  15. Lindsay Hwang (additional)
  16. Chao Cheng (additional)
  17. Richard P. Auburn (additional)
  18. Melissa B. Davis (additional)
  19. Marc Domanus (additional)
  20. Parantu K. Shah (additional)
  21. Carolyn A. Morrison (additional)
  22. Jennifer Zieba (additional)
  23. Sarah Suchy (additional)
  24. Lionel Senderowicz (additional)
  25. Alec Victorsen (additional)
  26. Nicholas A. Bild (additional)
  27. A. Jason Grundstad (additional)
  28. David Hanley (additional)
  29. David M. MacAlpine (additional)
  30. Mattias Mannervik (additional)
  31. Koen Venken (additional)
  32. Hugo Bellen (additional)
  33. Robert White (additional)
  34. Mark Gerstein (additional)
  35. Steven Russell (additional)
  36. Robert L. Grossman (additional)
  37. Bing Ren (additional)
  38. James W. Posakony (additional)
  39. Manolis Kellis (additional)
  40. Kevin P. White (additional)
References 27 Referenced 467
  1. Ren, B. et al. Genome-wide location and function of DNA binding proteins. Science 290, 2306–2309 (2000) (10.1126/science.290.5500.2306) / Science by B Ren (2000)
  2. Johnson, D. S., Mortazavi, A., Myers, R. M. & Wold, B. Genome-wide mapping of in vivo protein-DNA interactions. Science 316, 1497–1502 (2007) (10.1126/science.1141319) / Science by DS Johnson (2007)
  3. Heintzman, N. D. et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459, 108–112 (2009) (10.1038/nature07829) / Nature by ND Heintzman (2009)
  4. Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. & Cavalli, G. Genome regulation by polycomb and trithorax proteins. Cell 128, 735–745 (2007) (10.1016/j.cell.2007.02.009) / Cell by B Schuettengruber (2007)
  5. Filion, G. J. et al. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell 143, 212–224 (2010) (10.1016/j.cell.2010.09.009) / Cell by GJ Filion (2010)
  6. Li, X. Y. et al. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol. 6, e27 (2008) (10.1371/journal.pbio.0060027) / PLoS Biol. by XY Li (2008)
  7. MacArthur, S. et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol. 10, R80 (2009) (10.1186/gb-2009-10-7-r80) / Genome Biol. by S MacArthur (2009)
  8. Zeitlinger, J. et al. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nature Genet. 39, 1512–1516 (2007) (10.1038/ng.2007.26) / Nature Genet. by J Zeitlinger (2007)
  9. Zinzen, R. P., Girardot, C., Gagneur, J., Braun, M. & Furlong, E. E. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 462, 65–70 (2009) (10.1038/nature08531) / Nature by RP Zinzen (2009)
  10. Nègre, N. et al. A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet. 6, e1000814 (2010) (10.1371/journal.pgen.1000814) / PLoS Genet. by N Nègre (2010)
  11. Heintzman, N. D. et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nature Genet. 39, 311–318 (2007) (10.1038/ng1966) / Nature Genet. by ND Heintzman (2007)
  12. Schotta, G. et al. Central role of Drosophila SU(VAR)3–9 in histone H3-K9 methylation and heterochromatic gene silencing. EMBO J. 21, 1121–1131 (2002) (10.1093/emboj/21.5.1121) / EMBO J. by G Schotta (2002)
  13. Agger, K., Christensen, J., Cloos, P. A. & Helin, K. The emerging functions of histone demethylases. Curr. Opin. Genet. Dev. 18, 159–168 (2008) (10.1016/j.gde.2007.12.003) / Curr. Opin. Genet. Dev. by K Agger (2008)
  14. Visel, A. et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854–858 (2009) (10.1038/nature07730) / Nature by A Visel (2009)
  15. Kwong, C. et al. Stability and dynamics of polycomb target sites in Drosophila development. PLoS Genet. 4, e1000178 (2008) (10.1371/journal.pgen.1000178) / PLoS Genet. by C Kwong (2008)
  16. Kolasinska-Zwierz, P. et al. Differential chromatin marking of introns and expressed exons by H3K36me3. Nature Genet. 41, 376–381 (2009) (10.1038/ng.322) / Nature Genet. by P Kolasinska-Zwierz (2009)
  17. Hoskins, R. A. et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster . Genome Res. 21, 182–192 (2011) (10.1101/gr.112466.110) / Genome Res. by RA Hoskins (2011)
  18. Gerstein, M. B. et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330, 1775–1787 (2010) (10.1126/science.1196914) / Science by MB Gerstein (2010)
  19. Moorman, C. et al. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster . Proc. Natl Acad. Sci. USA 103, 12027–12032 (2006) (10.1073/pnas.0605003103) / Proc. Natl Acad. Sci. USA by C Moorman (2006)
  20. Henikoff, S., Henikoff, J. G., Sakai, A., Loeb, G. B. & Ahmad, K. Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Res. 19, 460–469 (2009) (10.1101/gr.087619.108) / Genome Res. by S Henikoff (2009)
  21. Gebelein, B., McKay, D. J. & Mann, R. S. Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature 431, 653–659 (2004) (10.1038/nature02946) / Nature by B Gebelein (2004)
  22. Nolo, R., Abbott, L. A. & Bellen, H. J. Senseless, a Zn finger transcription factor, is necessary and sufficient for sensory organ development in Drosophila . Cell 102, 349–362 (2000) (10.1016/S0092-8674(00)00040-4) / Cell by R Nolo (2000)
  23. Haecker, A. et al. Drosophila brakeless interacts with atrophin and is required for tailless-mediated transcriptional repression in early embryos. PLoS Biol. 5, e145 (2007) (10.1371/journal.pbio.0050145) / PLoS Biol. by A Haecker (2007)
  24. Rivera-Pomar, R., Lu, X., Perrimon, N., Taubert, H. & Jackle, H. Activation of posterior gap gene expression in the Drosophila blastoderm. Nature 376, 253–256 (1995) (10.1038/376253a0) / Nature by R Rivera-Pomar (1995)
  25. Zraly, C. B. et al. SNR1 is an essential subunit in a subset of Drosophila brm complexes, targeting specific functions during development. Dev. Biol. 253, 291–308 (2003) (10.1016/S0012-1606(02)00011-8) / Dev. Biol. by CB Zraly (2003)
  26. Truman, J. W. Metamorphosis of the central nervous system of Drosophila . J. Neurobiol. 21, 1072–1084 (1990) (10.1002/neu.480210711) / J. Neurobiol. by JW Truman (1990)
  27. Parrish, J. Z., Kim, M. D., Jan, L. Y. & Jan, Y. N. Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. Genes Dev. 20, 820–835 (2006) (10.1101/gad.1391006) / Genes Dev. by JZ Parrish (2006)
Dates
Type When
Created 14 years, 5 months ago (March 22, 2011, 9:33 a.m.)
Deposited 2 years, 3 months ago (May 18, 2023, 1:51 p.m.)
Indexed 2 days, 13 hours ago (Sept. 3, 2025, 7:03 a.m.)
Issued 14 years, 6 months ago (March 1, 2011)
Published 14 years, 6 months ago (March 1, 2011)
Published Online 14 years, 5 months ago (March 23, 2011)
Published Print 14 years, 6 months ago (March 1, 2011)
Funders 0

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@article{N_gre_2011, title={A cis-regulatory map of the Drosophila genome}, volume={471}, ISSN={1476-4687}, url={http://dx.doi.org/10.1038/nature09990}, DOI={10.1038/nature09990}, number={7339}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={Nègre, Nicolas and Brown, Christopher D. and Ma, Lijia and Bristow, Christopher Aaron and Miller, Steven W. and Wagner, Ulrich and Kheradpour, Pouya and Eaton, Matthew L. and Loriaux, Paul and Sealfon, Rachel and Li, Zirong and Ishii, Haruhiko and Spokony, Rebecca F. and Chen, Jia and Hwang, Lindsay and Cheng, Chao and Auburn, Richard P. and Davis, Melissa B. and Domanus, Marc and Shah, Parantu K. and Morrison, Carolyn A. and Zieba, Jennifer and Suchy, Sarah and Senderowicz, Lionel and Victorsen, Alec and Bild, Nicholas A. and Grundstad, A. Jason and Hanley, David and MacAlpine, David M. and Mannervik, Mattias and Venken, Koen and Bellen, Hugo and White, Robert and Gerstein, Mark and Russell, Steven and Grossman, Robert L. and Ren, Bing and Posakony, James W. and Kellis, Manolis and White, Kevin P.}, year={2011}, month=mar, pages={527–531} }