DOI: 10.1021/pr800982s. Accurate and Sensitive Peptide Identification with Mascot Percolator

Accurate and Sensitive Peptide Identification with Mascot Percolator

10.1021/pr800982s

Crossref journal-article

American Chemical Society (ACS)

Journal of Proteome Research (316)

Bibliography

Brosch, M., Yu, L., Hubbard, T., & Choudhary, J. (2009). Accurate and Sensitive Peptide Identification with Mascot Percolator. Journal of Proteome Research, 8(6), 3176â3181.

Authors 4

Markus Brosch (first)
Lu Yu (additional)
Tim Hubbard (additional)
Jyoti Choudhary (additional)

References 28 Referenced 382

10.1126/science.1546328 / Science by Hunt D. F. (1992)
10.1021/ac010617e / Anal. Chem. by Wolters D. A. (2001)
10.1186/gb-2004-6-1-r9 / Genome Biol. by Desiere F. (2005)
10.1186/gb-2006-7-6-r50 / Genome Biol. by de Godoy L. M. (2006)
10.1016/j.cell.2006.03.022 / Cell by Foster L. J. (2006)
10.1016/1044-0305(94)80016-2 / J. Am. Soc. Mass Spectrom. by Eng J. K. (1994)
10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 / Electrophoresis by Perkins D. N. (1999)
10.1093/bioinformatics/bth092 / Bioinformatics by Craig R. (2004)
10.1021/ac035229m / Anal. Chem. by Resing K. A. (2004)
10.1021/ac025747h / Anal. Chem. by Keller A. (2002)
10.1021/pr0255654 / J. Proteome Res. by Anderson D. C. (2003)
10.1038/nbt930 / Nat. Biotechnol. by Elias J. E. (2004)
10.1074/mcp.M500233-MCP200 / Mol. Cell. Proteomics by Ulintz P. J. (2006)
10.1038/nmeth1113 / Nat. Methods by Käll L. (2007)
10.1016/S1044-0305(02)00352-5 / J. Am. Soc. Mass Spectrom. by Moore R. E. (2002)
10.1002/pmic.200300485 / Proteomics by Colinge J. (2003)
10.1021/pr050315j / J. Proteome Res. by Klammer A. A. (2006)
10.1111/j.2517-6161.1995.tb02031.x / J. R. Stat. Soc., Ser. B by Benjamini Y. (1995)
10.1021/pr700600n / J. Proteome Res. by Käll L. (2008)
10.1073/pnas.1530509100 / Proc. Natl. Acad. Sci. U.S.A. by Storey J. D. (2003)
10.1021/pr700739d / J. Proteome Res. by Käll L. (2008)
10.1021/ac9604651 / Anal. Chem. by Zubarev R. A. (1996)
10.1074/mcp.M600380-MCP200 / Mol. Cell. Proteomics by Zubarev R. (2007)
10.1038/nmeth1019 / Nat. Methods by Elias J. E. (2007)
10.1074/mcp.M700293-MCP200 / Mol. Cell. Proteomics by Brosch M. (2008)
10.1093/bioinformatics/btn294 / Bioinformatics by Käll L. (2008)
10.1021/pr0705035 / J. Proteome Res. by Rodriguez J. (2008)
10.1038/nbt1240 / Nat. Biotechnol. by Beausoleil S. A. (2006)

Dates

Type	When
Created	16 years, 5 months ago (April 1, 2009, 2:44 p.m.)
Deposited	6 months, 4 weeks ago (Feb. 8, 2025, 3:11 p.m.)
Indexed	2 weeks, 2 days ago (Aug. 21, 2025, 1:09 p.m.)
Issued	16 years, 3 months ago (May 8, 2009)
Published	16 years, 3 months ago (May 8, 2009)
Published Online	16 years, 3 months ago (May 8, 2009)
Published Print	16 years, 3 months ago (June 5, 2009)

Funders 0

None

BibTeX

@article{Brosch_2009, title={Accurate and Sensitive Peptide Identification with Mascot Percolator}, volume={8}, ISSN={1535-3907}, url={http://dx.doi.org/10.1021/pr800982s}, DOI={10.1021/pr800982s}, number={6}, journal={Journal of Proteome Research}, publisher={American Chemical Society (ACS)}, author={Brosch, Markus and Yu, Lu and Hubbard, Tim and Choudhary, Jyoti}, year={2009}, month=may, pages={3176–3181} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        8,
        21
      ]
    ],
    "date-time": "2025-08-21T17:09:10Z",
    "timestamp": 1755796150645,
    "version": "3.37.0"
  },
  "reference-count": 28,
  "publisher": "American Chemical Society (ACS)",
  "issue": "6",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            1999,
            1,
            1
          ]
        ],
        "date-time": "1999-01-01T00:00:00Z",
        "timestamp": 915148800000
      },
      "content-version": "vor",
      "delay-in-days": 0,
      "URL": "http://pubs.acs.org/page/policy/authorchoice_termsofuse.html"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2009,
        6,
        5
      ]
    ]
  },
  "DOI": "10.1021/pr800982s",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2009,
        4,
        1
      ]
    ],
    "date-time": "2009-04-01T18:44:32Z",
    "timestamp": 1238611472000
  },
  "page": "3176-3181",
  "source": "Crossref",
  "is-referenced-by-count": 382,
  "title": "Accurate and Sensitive Peptide Identification with Mascot Percolator",
  "prefix": "10.1021",
  "volume": "8",
  "author": [
    {
      "given": "Markus",
      "family": "Brosch",
      "sequence": "first",
      "affiliation": [
        {
          "name": "The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom"
        }
      ]
    },
    {
      "given": "Lu",
      "family": "Yu",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom"
        }
      ]
    },
    {
      "given": "Tim",
      "family": "Hubbard",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom"
        }
      ]
    },
    {
      "given": "Jyoti",
      "family": "Choudhary",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, United Kingdom"
        }
      ]
    }
  ],
  "member": "316",
  "published-online": {
    "date-parts": [
      [
        2009,
        5,
        8
      ]
    ]
  },
  "reference": [
    {
      "key": "ref1/cit1",
      "doi-asserted-by": "crossref",
      "first-page": "1261",
      "DOI": "10.1126/science.1546328",
      "volume": "255",
      "author": "Hunt D. F.",
      "year": "1992",
      "journal-title": "Science"
    },
    {
      "key": "ref2/cit2",
      "doi-asserted-by": "crossref",
      "first-page": "5683",
      "DOI": "10.1021/ac010617e",
      "volume": "73",
      "author": "Wolters D. A.",
      "year": "2001",
      "journal-title": "Anal. Chem."
    },
    {
      "key": "ref3/cit3",
      "doi-asserted-by": "crossref",
      "first-page": "R9",
      "DOI": "10.1186/gb-2004-6-1-r9",
      "volume": "6",
      "author": "Desiere F.",
      "year": "2005",
      "journal-title": "Genome Biol."
    },
    {
      "key": "ref4/cit4",
      "doi-asserted-by": "crossref",
      "first-page": "R50",
      "DOI": "10.1186/gb-2006-7-6-r50",
      "volume": "7",
      "author": "de Godoy L. M.",
      "year": "2006",
      "journal-title": "Genome Biol."
    },
    {
      "key": "ref5/cit5",
      "doi-asserted-by": "crossref",
      "first-page": "187",
      "DOI": "10.1016/j.cell.2006.03.022",
      "volume": "125",
      "author": "Foster L. J.",
      "year": "2006",
      "journal-title": "Cell"
    },
    {
      "key": "ref6/cit6",
      "doi-asserted-by": "crossref",
      "first-page": "976",
      "DOI": "10.1016/1044-0305(94)80016-2",
      "volume": "5",
      "author": "Eng J. K.",
      "year": "1994",
      "journal-title": "J. Am. Soc. Mass Spectrom."
    },
    {
      "key": "ref7/cit7",
      "doi-asserted-by": "crossref",
      "first-page": "3551",
      "DOI": "10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2",
      "volume": "20",
      "author": "Perkins D. N.",
      "year": "1999",
      "journal-title": "Electrophoresis"
    },
    {
      "key": "ref8/cit8",
      "doi-asserted-by": "crossref",
      "first-page": "1466",
      "DOI": "10.1093/bioinformatics/bth092",
      "volume": "20",
      "author": "Craig R.",
      "year": "2004",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "ref9/cit9",
      "doi-asserted-by": "crossref",
      "first-page": "3556",
      "DOI": "10.1021/ac035229m",
      "volume": "76",
      "author": "Resing K. A.",
      "year": "2004",
      "journal-title": "Anal. Chem."
    },
    {
      "key": "ref10/cit10",
      "doi-asserted-by": "crossref",
      "first-page": "5383",
      "DOI": "10.1021/ac025747h",
      "volume": "74",
      "author": "Keller A.",
      "year": "2002",
      "journal-title": "Anal. Chem."
    },
    {
      "key": "ref11/cit11",
      "doi-asserted-by": "crossref",
      "first-page": "137",
      "DOI": "10.1021/pr0255654",
      "volume": "2",
      "author": "Anderson D. C.",
      "year": "2003",
      "journal-title": "J. Proteome Res."
    },
    {
      "key": "ref12/cit12",
      "doi-asserted-by": "crossref",
      "first-page": "214",
      "DOI": "10.1038/nbt930",
      "volume": "22",
      "author": "Elias J. E.",
      "year": "2004",
      "journal-title": "Nat. Biotechnol."
    },
    {
      "key": "ref13/cit13",
      "doi-asserted-by": "crossref",
      "first-page": "497",
      "DOI": "10.1074/mcp.M500233-MCP200",
      "volume": "5",
      "author": "Ulintz P. J.",
      "year": "2006",
      "journal-title": "Mol. Cell. Proteomics"
    },
    {
      "key": "ref14/cit14",
      "doi-asserted-by": "crossref",
      "first-page": "923",
      "DOI": "10.1038/nmeth1113",
      "volume": "4",
      "author": "K\u00e4ll L.",
      "year": "2007",
      "journal-title": "Nat. Methods"
    },
    {
      "key": "ref15/cit15",
      "doi-asserted-by": "crossref",
      "first-page": "378",
      "DOI": "10.1016/S1044-0305(02)00352-5",
      "volume": "13",
      "author": "Moore R. E.",
      "year": "2002",
      "journal-title": "J. Am. Soc. Mass Spectrom."
    },
    {
      "key": "ref16/cit16",
      "doi-asserted-by": "crossref",
      "first-page": "1454",
      "DOI": "10.1002/pmic.200300485",
      "volume": "3",
      "author": "Colinge J.",
      "year": "2003",
      "journal-title": "Proteomics"
    },
    {
      "key": "ref17/cit17",
      "doi-asserted-by": "crossref",
      "first-page": "695",
      "DOI": "10.1021/pr050315j",
      "volume": "5",
      "author": "Klammer A. A.",
      "year": "2006",
      "journal-title": "J. Proteome Res."
    },
    {
      "key": "ref18/cit18",
      "doi-asserted-by": "crossref",
      "first-page": "289",
      "DOI": "10.1111/j.2517-6161.1995.tb02031.x",
      "volume": "57",
      "author": "Benjamini Y.",
      "year": "1995",
      "journal-title": "J. R. Stat. Soc., Ser. B"
    },
    {
      "key": "ref19/cit19",
      "doi-asserted-by": "crossref",
      "first-page": "29",
      "DOI": "10.1021/pr700600n",
      "volume": "7",
      "author": "K\u00e4ll L.",
      "year": "2008",
      "journal-title": "J. Proteome Res."
    },
    {
      "key": "ref20/cit20",
      "doi-asserted-by": "crossref",
      "first-page": "9440",
      "DOI": "10.1073/pnas.1530509100",
      "volume": "100",
      "author": "Storey J. D.",
      "year": "2003",
      "journal-title": "Proc. Natl. Acad. Sci. U.S.A."
    },
    {
      "key": "ref21/cit21",
      "doi-asserted-by": "crossref",
      "first-page": "40",
      "DOI": "10.1021/pr700739d",
      "volume": "7",
      "author": "K\u00e4ll L.",
      "year": "2008",
      "journal-title": "J. Proteome Res."
    },
    {
      "key": "ref22/cit22",
      "doi-asserted-by": "crossref",
      "first-page": "4060",
      "DOI": "10.1021/ac9604651",
      "volume": "68",
      "author": "Zubarev R. A.",
      "year": "1996",
      "journal-title": "Anal. Chem."
    },
    {
      "key": "ref23/cit23",
      "doi-asserted-by": "crossref",
      "first-page": "377",
      "DOI": "10.1074/mcp.M600380-MCP200",
      "volume": "6",
      "author": "Zubarev R.",
      "year": "2007",
      "journal-title": "Mol. Cell. Proteomics"
    },
    {
      "key": "ref24/cit24",
      "doi-asserted-by": "crossref",
      "first-page": "207",
      "DOI": "10.1038/nmeth1019",
      "volume": "4",
      "author": "Elias J. E.",
      "year": "2007",
      "journal-title": "Nat. Methods"
    },
    {
      "key": "ref25/cit25",
      "doi-asserted-by": "crossref",
      "first-page": "962",
      "DOI": "10.1074/mcp.M700293-MCP200",
      "volume": "7",
      "author": "Brosch M.",
      "year": "2008",
      "journal-title": "Mol. Cell. Proteomics"
    },
    {
      "key": "ref26/cit26",
      "doi-asserted-by": "crossref",
      "first-page": "i42",
      "DOI": "10.1093/bioinformatics/btn294",
      "volume": "24",
      "author": "K\u00e4ll L.",
      "year": "2008",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "ref27/cit27",
      "doi-asserted-by": "crossref",
      "first-page": "300",
      "DOI": "10.1021/pr0705035",
      "volume": "7",
      "author": "Rodriguez J.",
      "year": "2008",
      "journal-title": "J. Proteome Res."
    },
    {
      "key": "ref28/cit28",
      "doi-asserted-by": "crossref",
      "first-page": "1285",
      "DOI": "10.1038/nbt1240",
      "volume": "24",
      "author": "Beausoleil S. A.",
      "year": "2006",
      "journal-title": "Nat. Biotechnol."
    }
  ],
  "container-title": "Journal of Proteome Research",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://pubs.acs.org/doi/pdf/10.1021/pr800982s",
      "content-type": "unspecified",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2025,
        2,
        8
      ]
    ],
    "date-time": "2025-02-08T20:11:03Z",
    "timestamp": 1739045463000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://pubs.acs.org/doi/10.1021/pr800982s"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2009,
        5,
        8
      ]
    ]
  },
  "references-count": 28,
  "journal-issue": {
    "issue": "6",
    "published-print": {
      "date-parts": [
        [
          2009,
          6,
          5
        ]
      ]
    }
  },
  "alternative-id": [
    "10.1021/pr800982s"
  ],
  "URL": "http://dx.doi.org/10.1021/pr800982s",
  "relation": {},
  "ISSN": [
    "1535-3893",
    "1535-3907"
  ],
  "subject": [],
  "container-title-short": "J. Proteome Res.",
  "published": {
    "date-parts": [
      [
        2009,
        5,
        8
      ]
    ]
  }
}