DOI: 10.1021/nn101662a. A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform

A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform

10.1021/nn101662a

Crossref journal-article

American Chemical Society (ACS)

ACS Nano (316)

Bibliography

Subramani, R., Juul, S., Rotaru, A., Andersen, F. F., Gothelf, K. V., Mamdouh, W., Besenbacher, F., Dong, M., & Knudsen, B. R. (2010). A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform. ACS Nano, 4(10), 5969â5977.

Authors 9

Ramesh Subramani (first)
Sissel Juul (additional)
Alexandru Rotaru (additional)
Felicie F. Andersen (additional)
Kurt V. Gothelf (additional)
Wael Mamdouh (additional)
Flemming Besenbacher (additional)
Mingdong Dong (additional)
Birgitta R. Knudsen (additional)

References 33 Referenced 32

10.1146/annurev.biochem.70.1.369 / Annu. Rev. Biochem. by Champoux J. J. (2001)
10.1093/nar/16.23.11157 / Nucleic Acids Res. by Jaxel C. (1988)
10.1016/0022-2836(90)90305-6 / J. Mol. Biol. by Shen C. C. (1990)
10.1006/jmbi.1993.1252 / J. Mol. Biol. by Parker L. H. (1993)
10.1002/j.1460-2075.1995.tb00224.x / EMBO J. by Madden K. R. (1995)
10.1016/0167-4781(85)90057-0 / Biochim. Biophys. Acta by Müller M. T. (1985)
10.1093/nar/16.14.7071 / Nucleic Acids Res. by Camilloni G. (1988)
10.1021/bi00487a024 / Biochemistry by Caserta M. (1990)
10.1002/j.1460-2075.1990.tb07908.x / EMBO J. by Zechiedrich E. L. (1990)
10.1111/j.1742-4658.2009.07270.x / FEBS J. by Yang Z. (2009)
10.1073/pnas.242259599 / Proc Natl Acad Sci U.S.A. by Staker B. L. (2002)
10.1093/emboj/16.21.6584 / EMBO J. by Shuman S. (1997)
10.1093/nar/gki906 / Nucleic Acids Res. by Moreno-Herrero F. (2005)
10.1016/j.str.2010.03.007 / Structure by Patel A. (2010)
10.1016/S0167-4781(98)00144-4 / Biochim. Biophys. Acta by Shuman S. (1998)
10.1046/j.1365-2958.1999.01493.x / Mol. Microbiol. by Grainge I. (1999)
{'key': 'ref17/cit17', 'first-page': '885', 'volume': '6', 'author': 'Chen Y.', 'year': '2000', 'journal-title': 'Mol. Cell'} / Mol. Cell by Chen Y. (2000)
10.1038/37925 / Nature by Guo F. (1997)
10.1038/nature04586 / Nature by Rothemund P. W. K. (2006)
10.1038/nnano.2009.311 / Nat. Nanotechnol. by Maune H. T. (2010)
10.1021/ja802853r / J. Am. Chem. Soc. by Sharma J. (2008)
10.1038/nnano.2009.450 / Nat. Nanotechnol. by Hung A. (2009)
10.1088/0957-4484/20/23/235305 / Nanotechnology by Kuzyk A. (2009)
10.1002/cbic.200900229 / ChemBioChem by Kuzuya A. (2009)
10.1021/nl1018468 / Nano Lett. by Stephanopoulos N. (2010)
10.1021/ja907649w / J. Am. Chem. Soc. by Endo M. (2010)
10.1038/nnano.2010.5 / Nat. Nanotechnol. by Voigt N. V. (2010)
10.1021/bi980757r / Biochemistry by Lisby M. (1998)
10.1126/science.279.5356.1504 / Science by Redinbo M. R. (1998)
10.1016/S0021-9258(18)81773-2 / J. Biol. Chem. by Stevnsner T. (1989)
10.1021/bi00475a028 / Biochemistry by Bendixen C. (1990)
10.1016/S0022-2836(03)00593-X / J. Mol. Biol. by Andersen F. F. (2003)
10.1074/jbc.M010991200 / J. Biol. Chem. by Lisby M. (2001)

Dates

Type	When
Created	14 years, 11 months ago (Sept. 9, 2010, 4:19 p.m.)
Deposited	2 years, 4 months ago (April 7, 2023, 5:24 p.m.)
Indexed	1 month ago (Aug. 2, 2025, 1:14 a.m.)
Issued	14 years, 11 months ago (Sept. 9, 2010)
Published	14 years, 11 months ago (Sept. 9, 2010)
Published Online	14 years, 11 months ago (Sept. 9, 2010)
Published Print	14 years, 10 months ago (Oct. 26, 2010)

Funders 0

None

BibTeX

@article{Subramani_2010, title={A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by using a 2D DNA Origami Platform}, volume={4}, ISSN={1936-086X}, url={http://dx.doi.org/10.1021/nn101662a}, DOI={10.1021/nn101662a}, number={10}, journal={ACS Nano}, publisher={American Chemical Society (ACS)}, author={Subramani, Ramesh and Juul, Sissel and Rotaru, Alexandru and Andersen, Felicie F. and Gothelf, Kurt V. and Mamdouh, Wael and Besenbacher, Flemming and Dong, Mingdong and Knudsen, Birgitta R.}, year={2010}, month=sep, pages={5969–5977} }

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      "DOI": "10.1016/0022-2836(90)90305-6",
      "volume": "212",
      "author": "Shen C. C.",
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      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "ref4/cit4",
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      "first-page": "6",
      "DOI": "10.1006/jmbi.1993.1252",
      "volume": "231",
      "author": "Parker L. H.",
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      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "ref5/cit5",
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      "first-page": "5399",
      "DOI": "10.1002/j.1460-2075.1995.tb00224.x",
      "volume": "14",
      "author": "Madden K. R.",
      "year": "1995",
      "journal-title": "EMBO J."
    },
    {
      "key": "ref6/cit6",
      "doi-asserted-by": "crossref",
      "first-page": "263",
      "DOI": "10.1016/0167-4781(85)90057-0",
      "volume": "824",
      "author": "M\u00fcller M. T.",
      "year": "1985",
      "journal-title": "Biochim. Biophys. Acta"
    },
    {
      "key": "ref7/cit7",
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      "first-page": "7071",
      "DOI": "10.1093/nar/16.14.7071",
      "volume": "16",
      "author": "Camilloni G.",
      "year": "1988",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "ref8/cit8",
      "doi-asserted-by": "crossref",
      "first-page": "8152",
      "DOI": "10.1021/bi00487a024",
      "volume": "29",
      "author": "Caserta M.",
      "year": "1990",
      "journal-title": "Biochemistry"
    },
    {
      "key": "ref9/cit9",
      "doi-asserted-by": "crossref",
      "first-page": "4555",
      "DOI": "10.1002/j.1460-2075.1990.tb07908.x",
      "volume": "9",
      "author": "Zechiedrich E. L.",
      "year": "1990",
      "journal-title": "EMBO J."
    },
    {
      "key": "ref10/cit10",
      "doi-asserted-by": "crossref",
      "first-page": "5906",
      "DOI": "10.1111/j.1742-4658.2009.07270.x",
      "volume": "276",
      "author": "Yang Z.",
      "year": "2009",
      "journal-title": "FEBS J."
    },
    {
      "key": "ref11/cit11",
      "doi-asserted-by": "crossref",
      "first-page": "15387",
      "DOI": "10.1073/pnas.242259599",
      "volume": "99",
      "author": "Staker B. L.",
      "year": "2002",
      "journal-title": "Proc Natl Acad Sci U.S.A."
    },
    {
      "key": "ref12/cit12",
      "doi-asserted-by": "crossref",
      "first-page": "6584",
      "DOI": "10.1093/emboj/16.21.6584",
      "volume": "3",
      "author": "Shuman S.",
      "year": "1997",
      "journal-title": "EMBO J."
    },
    {
      "key": "ref13/cit13",
      "doi-asserted-by": "crossref",
      "first-page": "5945",
      "DOI": "10.1093/nar/gki906",
      "volume": "33",
      "author": "Moreno-Herrero F.",
      "year": "2005",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "ref14/cit14",
      "doi-asserted-by": "crossref",
      "first-page": "725",
      "DOI": "10.1016/j.str.2010.03.007",
      "volume": "18",
      "author": "Patel A.",
      "year": "2010",
      "journal-title": "Structure"
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    {
      "key": "ref15/cit15",
      "doi-asserted-by": "crossref",
      "first-page": "321",
      "DOI": "10.1016/S0167-4781(98)00144-4",
      "volume": "1400",
      "author": "Shuman S.",
      "year": "1998",
      "journal-title": "Biochim. Biophys. Acta"
    },
    {
      "key": "ref16/cit16",
      "doi-asserted-by": "crossref",
      "first-page": "449",
      "DOI": "10.1046/j.1365-2958.1999.01493.x",
      "volume": "33",
      "author": "Grainge I.",
      "year": "1999",
      "journal-title": "Mol. Microbiol."
    },
    {
      "key": "ref17/cit17",
      "first-page": "885",
      "volume": "6",
      "author": "Chen Y.",
      "year": "2000",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "ref18/cit18",
      "doi-asserted-by": "crossref",
      "first-page": "40",
      "DOI": "10.1038/37925",
      "volume": "389",
      "author": "Guo F.",
      "year": "1997",
      "journal-title": "Nature"
    },
    {
      "key": "ref19/cit19",
      "doi-asserted-by": "crossref",
      "first-page": "297",
      "DOI": "10.1038/nature04586",
      "volume": "440",
      "author": "Rothemund P. W. K.",
      "year": "2006",
      "journal-title": "Nature"
    },
    {
      "key": "ref20/cit20",
      "doi-asserted-by": "crossref",
      "first-page": "61",
      "DOI": "10.1038/nnano.2009.311",
      "volume": "5",
      "author": "Maune H. T.",
      "year": "2010",
      "journal-title": "Nat. Nanotechnol."
    },
    {
      "key": "ref21/cit21",
      "doi-asserted-by": "crossref",
      "first-page": "7820",
      "DOI": "10.1021/ja802853r",
      "volume": "130",
      "author": "Sharma J.",
      "year": "2008",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "ref22/cit22",
      "doi-asserted-by": "crossref",
      "first-page": "121",
      "DOI": "10.1038/nnano.2009.450",
      "volume": "5",
      "author": "Hung A.",
      "year": "2009",
      "journal-title": "Nat. Nanotechnol."
    },
    {
      "key": "ref23/cit23",
      "doi-asserted-by": "crossref",
      "first-page": "235305",
      "DOI": "10.1088/0957-4484/20/23/235305",
      "volume": "20",
      "author": "Kuzyk A.",
      "year": "2009",
      "journal-title": "Nanotechnology"
    },
    {
      "key": "ref24/cit24",
      "doi-asserted-by": "crossref",
      "first-page": "1811",
      "DOI": "10.1002/cbic.200900229",
      "volume": "10",
      "author": "Kuzuya A.",
      "year": "2009",
      "journal-title": "ChemBioChem"
    },
    {
      "key": "ref25/cit25",
      "doi-asserted-by": "crossref",
      "first-page": "2714",
      "DOI": "10.1021/nl1018468",
      "volume": "10",
      "author": "Stephanopoulos N.",
      "year": "2010",
      "journal-title": "Nano Lett."
    },
    {
      "key": "ref26/cit26",
      "doi-asserted-by": "crossref",
      "first-page": "1592",
      "DOI": "10.1021/ja907649w",
      "volume": "132",
      "author": "Endo M.",
      "year": "2010",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "ref27/cit27",
      "doi-asserted-by": "crossref",
      "first-page": "200",
      "DOI": "10.1038/nnano.2010.5",
      "volume": "5",
      "author": "Voigt N. V.",
      "year": "2010",
      "journal-title": "Nat. Nanotechnol."
    },
    {
      "key": "ref28/cit28",
      "doi-asserted-by": "crossref",
      "first-page": "10815",
      "DOI": "10.1021/bi980757r",
      "volume": "37",
      "author": "Lisby M.",
      "year": "1998",
      "journal-title": "Biochemistry"
    },
    {
      "key": "ref29/cit29",
      "doi-asserted-by": "crossref",
      "first-page": "1504",
      "DOI": "10.1126/science.279.5356.1504",
      "volume": "279",
      "author": "Redinbo M. R.",
      "year": "1998",
      "journal-title": "Science"
    },
    {
      "key": "ref30/cit30",
      "doi-asserted-by": "crossref",
      "first-page": "10110",
      "DOI": "10.1016/S0021-9258(18)81773-2",
      "volume": "264",
      "author": "Stevnsner T.",
      "year": "1989",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "ref31/cit31",
      "doi-asserted-by": "crossref",
      "first-page": "5613",
      "DOI": "10.1021/bi00475a028",
      "volume": "29",
      "author": "Bendixen C.",
      "year": "1990",
      "journal-title": "Biochemistry"
    },
    {
      "key": "ref32/cit32",
      "doi-asserted-by": "crossref",
      "first-page": "235",
      "DOI": "10.1016/S0022-2836(03)00593-X",
      "volume": "330",
      "author": "Andersen F. F.",
      "year": "2003",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "ref33/cit33",
      "doi-asserted-by": "crossref",
      "first-page": "20220",
      "DOI": "10.1074/jbc.M010991200",
      "volume": "276",
      "author": "Lisby M.",
      "year": "2001",
      "journal-title": "J. Biol. Chem."
    }
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