Crossref journal-article
American Chemical Society (ACS)
The Journal of Physical Chemistry B (316)
Bibliography

Ferrara, P., Apostolakis, J., & Caflisch, A. (2000). Thermodynamics and Kinetics of Folding of Two Model Peptides Investigated by Molecular Dynamics Simulations. The Journal of Physical Chemistry B, 104(20), 5000–5010.

Authors 3
  1. Philippe Ferrara (first)
  2. Joannis Apostolakis (additional)
  3. Amedeo Caflisch (additional)
References 75 Referenced 125
  1. {'key': 'jp994157tb00001/jp994157tb00001_1', 'first-page': '176', 'volume': '46', 'author': 'Chakrabartty A.', 'year': '1995', 'journal-title': 'Adv. Protein Chem.'} / Adv. Protein Chem. by Chakrabartty A. (1995)
  2. 10.1016/0958-1669(95)80066-2 / Curr. Opin. Biotechnol. by Munõz V. (1995)
  3. 10.1016/S0959-440X(98)80017-1 / Curr. Opin. Struct. Biol. by Blanco F. (1998)
  4. 10.1016/S1367-5931(98)80109-9 / Curr. Opin. Chem. Biol. by Gellman S. H. (1998)
  5. {'key': 'jp994157tb00005/jp994157tb00005_1', 'first-page': '230', 'volume-title': 'The Protein Folding Problem and Tertiary Structure Prediction', 'author': 'Caflisch A.', 'year': '1994'} / The Protein Folding Problem and Tertiary Structure Prediction by Caflisch A. (1994)
  6. 10.1021/jp980839p / J. Phys. Chem. B by Wu X. (1998)
  7. 10.1021/jp983774z / J. Phys. Chem. B by Elber R. (1999)
  8. Daura, X.; van Gunsteren, W. F.; Mark, A. E.Proteins:  Struct., Funct.Genet.1999,34, 269−280. (10.1002/(SICI)1097-0134(19990215)34:3<269::AID-PROT1>3.0.CO;2-3)
  9. 10.1016/S1093-3263(99)00017-0 / J. Mol. Graphics Modell. by Galzitskaya O. (1999)
  10. 10.1038/36626 / Nature by Munõz V. (1997)
  11. Prevost, M.; Ortmans, I.Proteins:  Struct., Funct., Genet.1997,29, 212−227. (10.1002/(SICI)1097-0134(199710)29:2<212::AID-PROT9>3.0.CO;2-E)
  12. 10.1016/S0006-3495(99)77186-9 / Biophys. J. by Sung S. (1999)
  13. 10.1006/jmbi.1998.2172 / J. Mol. Biol. by Schaefer M. (1998)
  14. 10.1073/pnas.96.16.9068 / Proc. Natl. Acad. Sci. U.S.A. by Dinner A. R. (1999)
  15. {'key': 'jp994157tb00015/jp994157tb00015_1', 'first-page': '9067', 'volume': '96', 'author': 'Pande V. S.', 'year': '1999', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Pande V. S. (1999)
  16. {'key': 'jp994157tb00016/jp994157tb00016_1', 'first-page': '8293', 'volume': '116', 'author': 'Shalongo W.', 'year': '1994', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Shalongo W. (1994)
  17. {'key': 'jp994157tb00017/jp994157tb00017_1', 'volume-title': 'Function and Genetics', 'author': 'Sung S.', 'year': '1996'} / Function and Genetics by Sung S. (1996)
  18. Shirley, W. A.; Brooks, III, C. L.Proteins:  Struct., Funct., Genet.1997,28, 59−71. (10.1002/(SICI)1097-0134(199705)28:1<59::AID-PROT6>3.0.CO;2-E)
  19. 10.1073/pnas.93.16.8189 / Proc. Natl. Acad. Sci. U.S.A. by Karle I. L. (1996)
  20. 10.1021/ja960429j / J. Am. Chem. Soc. by Haque T. S. (1996)
  21. 10.1021/ja963653h / J. Am. Chem. Soc. by Haque T. S. (1997)
  22. {'key': 'jp994157tb00022/jp994157tb00022_1', 'first-page': '4237', 'volume': '120', 'author': 'Stanger H. E.', 'year': '1998', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Stanger H. E. (1998)
  23. 10.1002/jcc.540040211 / J. Comput. Chem. by Brooks B. R. (1983)
  24. {'key': 'jp994157tb00024/jp994157tb00024_1', 'first-page': '1921', 'volume': '105', 'author': 'Neria E.', 'year': '1996', 'journal-title': 'J. Chem. Phys.'} / J. Chem. Phys. by Neria E. (1996)
  25. 10.1126/science.278.5345.1928 / Science by Lazaridis T. (1997)
  26. Lazaridis, T.; Karplus, M.Proteins:  Struct., Funct., Genetics1999,35, 133−152. (10.1002/(SICI)1097-0134(19990501)35:2<133::AID-PROT1>3.0.CO;2-N)
  27. 10.1021/bi00312a015 / Biochemistry by Mehler E. L. (1984)
  28. 10.1073/pnas.85.19.7231 / Proc. Natl. Acad. Sci. U.S.A. by Ramstein J. (1988)
  29. 10.1007/s002140050429 / Theor. Chem. Acc. by Schaefer M. (1999)
  30. 10.1038/319199a0 / Nature by Eisenberg D. (1986)
  31. 10.1016/0898-5529(88)90015-2 / Tetrahedron Comput. Methodol. by Hasel W. (1988)
  32. 10.1006/jmbi.1996.0139 / J. Mol. Biol. by Fraternali F. (1996)
  33. {'key': 'jp994157tb00033/jp994157tb00033_1', 'first-page': '865', 'volume': '8', 'author': 'De Alba E.', 'year': '1999', 'journal-title': 'Protein Sci.'} / Protein Sci. by De Alba E. (1999)
  34. 10.1021/ja973984+ / J. Am. Chem. Soc. by Schenck H. L. (1998)
  35. {'key': 'jp994157tb00035/jp994157tb00035_1', 'first-page': '3690', 'volume': '81', 'author': 'Berendsen H. J. C.', 'year': '1984', 'journal-title': 'J. Chem. Phys.'} / J. Chem. Phys. by Berendsen H. J. C. (1984)
  36. van Holde, K. E.; Johnson, W. C.; Ho, P. S.Principles of physicalbiochemistry; Prentice Hall:  New York, 1998; p 157.
  37. 10.1016/0022-2836(88)90103-9 / J. Mol. Biol. by Wilmot C. M. (1988)
  38. {'key': 'jp994157tb00038/jp994157tb00038_1', 'volume-title': 'Statistical mechanics', 'author': 'McQuarrie D. A.', 'year': '1976'} / Statistical mechanics by McQuarrie D. A. (1976)
  39. 10.1063/1.1731802 / J. Chem. Phys. by Lifson S. (1961)
  40. 10.1038/316170a0 / Nature by Sibanda B. L. (1985)
  41. {'key': 'jp994157tb00041/jp994157tb00041_1', 'first-page': '697', 'volume': '35', 'author': 'Williams S.', 'year': '1996', 'journal-title': 'Biochemistry'} / Biochemistry by Williams S. (1996)
  42. 10.1073/pnas.94.8.3709 / Proc. Natl. Acad. Sci. U.S.A. by Gilmanshin R. (1997)
  43. {'key': 'jp994157tb00043/jp994157tb00043_1', 'first-page': '5879', 'volume': '95', 'author': 'Munõz V.', 'year': '1998', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Munõz V. (1998)
  44. 10.1006/jmbi.1995.0511 / J. Mol. Biol. by Abkevich V. I. (1995)
  45. 10.1002/pro.5560030514 / Protein Sci. by Chakrabartty A. (1994)
  46. 10.1002/jcc.540100313 / J. Comput. Chem. by Davis M. E. (1989)
  47. 10.1016/0010-4655(91)90094-2 / Comput. Phys. Commun. by Davis M. E. (1991)
  48. 10.1021/jp9714227 / J. Phys. Chem. A by Scarsi M. (1997)
  49. {'key': 'jp994157tb00049/jp994157tb00049_1', 'first-page': '1536', 'volume': '14', 'author': 'Scarsi M.', 'year': '1999', 'journal-title': 'J. Comput. Chem.'} / J. Comput. Chem. by Scarsi M. (1999)
  50. {'key': 'jp994157tb00050/jp994157tb00050_1', 'first-page': '2858', 'volume': '88', 'author': 'Scholtz J. M.', 'year': '1991', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Scholtz J. M. (1991)
  51. {'key': 'jp994157tb00051/jp994157tb00051_1', 'first-page': '535', 'volume': '31', 'author': 'Zimm B. H.', 'year': '1959', 'journal-title': 'J. Chem. Phys.'} / J. Chem. Phys. by Zimm B. H. (1959)
  52. 10.1002/bip.360311202 / Biopolymers by Soman K. V. (1991)
  53. 10.1021/bi00238a034 / Biochemistry by Tobias D. J. (1991)
  54. 10.1021/bi00230a009 / Biochemistry by Tirado-Rives J. (1991)
  55. 10.1006/jmbi.1996.0339 / J. Mol. Biol. by Young W. S. (1996)
  56. 10.1021/ja00077a066 / J. Am. Chem. Soc. by Tirado-Rives J. (1993)
  57. 10.1063/1.467320 / J. Chem. Phys. by Abkevich V. I. (1994)
  58. Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G.Proteins: Struct., Funct., Genet.1995,21, 167−195. (10.1002/prot.340210302)
  59. Ferrara, P.; Apostolakis, J.; Caflisch, A.Proteins:  Struct., Funct., Genet.2000,39, 252−260. (10.1002/(SICI)1097-0134(20000515)39:3<252::AID-PROT80>3.0.CO;2-3)
  60. {'key': 'jp994157tb00060/jp994157tb00060_1', 'author': 'Ferrara P.', 'year': '2000', 'journal-title': 'J. Phys. Chem.'} / J. Phys. Chem. by Ferrara P. (2000)
  61. 10.1016/S0959-440X(97)80003-6 / Curr. Opin. Struct. Biol. by Eaton W. A. (1997)
  62. {'key': 'jp994157tb00062/jp994157tb00062_1', 'first-page': '2549', 'volume': '100', 'author': 'Brooks III, C. L.', 'year': '1996', 'journal-title': 'J. Phys. Chem.'} / J. Phys. Chem. by Brooks III, C. L. (1996)
  63. 10.1021/ja982919c / J. Am. Chem. Soc. by Takano M. (1999)
  64. 10.1073/pnas.96.13.7232 / Proc. Natl. Acad. Sci. U.S.A. by Clarke D. T. (1999)
  65. 10.1073/pnas.96.6.2782 / Proc. Natl. Acad. Sci. U.S.A. by Goldbeck R. A. (1999)
  66. 10.1073/pnas.96.11.6031 / Proc. Natl. Acad. Sci. U.S.A. by Sabelko J. (1999)
  67. {'key': 'jp994157tb00067/jp994157tb00067_1', 'first-page': '8086', 'volume': '121', 'author': 'Lednev I. K.', 'year': '1999', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Lednev I. K. (1999)
  68. 10.1073/pnas.92.19.8926 / Proc. Natl. Acad. Sci. U.S.A. by Oliveberg M. (1995)
  69. {'key': 'jp994157tb00069/jp994157tb00069_1', 'first-page': '2488', 'volume': '23', 'author': 'Segawa S. I.', 'year': '1984', 'journal-title': 'Biopolymers'} / Biopolymers by Segawa S. I. (1984)
  70. 10.1007/BF00999578 / Mol. Eng. by Karplus M. (1995)
  71. 10.1016/S1359-0278(97)00067-9 / Folding Des. by Karplus M. (1997)
  72. 10.1002/(SICI)1521-3773(19980420)37:7<868::AID-ANIE868>3.0.CO;2-H / Angew. Chem., Int. Ed. by Dobson C. M. (1998)
  73. 10.1073/pnas.94.20.10636 / Proc. Natl. Acad. Sci. U.S.A. by Scalley M. L. (1997)
  74. Chan, H. S.; Dill, K. A.Proteins:  Struct., Funct., Genet.1998,30, 2−33. (10.1002/(SICI)1097-0134(19980101)30:1<2::AID-PROT2>3.0.CO;2-R)
  75. 10.1006/jmbi.1999.3051 / J. Mol. Biol. by Dinner A. R. (1999)
Dates
Type When
Created 23 years, 1 month ago (July 26, 2002, 2:02 a.m.)
Deposited 3 years, 10 months ago (Oct. 11, 2021, 12:06 p.m.)
Indexed 3 weeks, 3 days ago (Aug. 6, 2025, 9:39 a.m.)
Issued 25 years, 3 months ago (May 1, 2000)
Published 25 years, 3 months ago (May 1, 2000)
Published Online 25 years, 3 months ago (May 2, 2000)
Published Print 25 years, 3 months ago (May 1, 2000)
Funders 0

None

@article{Ferrara_2000, title={Thermodynamics and Kinetics of Folding of Two Model Peptides Investigated by Molecular Dynamics Simulations}, volume={104}, ISSN={1520-5207}, url={http://dx.doi.org/10.1021/jp994157t}, DOI={10.1021/jp994157t}, number={20}, journal={The Journal of Physical Chemistry B}, publisher={American Chemical Society (ACS)}, author={Ferrara, Philippe and Apostolakis, Joannis and Caflisch, Amedeo}, year={2000}, month=may, pages={5000–5010} }