DOI: 10.1021/jp952950q. Conformational Free Energy Landscape of ApApA from Molecular Dynamics Simulations

Conformational Free Energy Landscape of ApApA from Molecular Dynamics Simulations

10.1021/jp952950q

Crossref journal-article

American Chemical Society (ACS)

The Journal of Physical Chemistry (316)

Bibliography

Norberg, J., & Nilsson, L. (1996). Conformational Free Energy Landscape of ApApA from Molecular Dynamics Simulations. The Journal of Physical Chemistry, 100(7), 2550â2554.

Authors 2

Jan Norberg (first)
Lennart Nilsson (additional)

References 28 Referenced 31

{'key': 'jp952950qb00001/jp952950qb00001_1', 'volume-title': 'Principles of Nucleic Acid Structure', 'author': 'Saenger W.', 'year': '1988'} / Principles of Nucleic Acid Structure by Saenger W. (1988)
10.1016/0006-291X(66)90567-5 / Biochem. Biophys. Res. Commun. by Hanlon S. (1966)
10.1016/0003-9861(61)90016-9 / Arch. Biochem. Biophys. by Herskovits T. T. (1961)
10.1021/ja00090a057 / J. Am. Chem. Soc. by Newcomb L. F. (1994)
10.1016/0022-2836(72)90494-9 / J. Mol. Biol. by Lowe M. J. (1972)
10.1002/prot.340210302 / Proteins by Bryngelson J. D. (1995)
10.1126/science.1749933 / Science by Frauenfelder H. (1991)
10.1107/S0567740876006316 / Acta Crystallogr. by Suck D. (1976)
10.1080/07391102.1986.10508460 / J. Biomol. Struct. Dyn. by Stone M. P. (1986)
10.1016/S0022-2836(65)80080-8 / J. Mol. Biol. by Cantor C. R. (1965)
10.1111/j.1432-1033.1983.tb07836.x / Eur. J. Biochem. by Lee C.-H. (1983)
10.1002/jcc.540150407 / J. Comput. Chem. by Ghomi M. (1994)
10.1016/S0006-3495(94)80541-7 / Biophys. J. by Norberg J. (1994)
10.1016/0009-2614(94)00507-9 / Chem. Phys. Lett. by Norberg J. (1994)
10.1021/ja00149a006 / J. Am. Chem. Soc. by Norberg J. (1995)
10.1021/j100035a002 / J. Phys. Chem. by Norberg J. (1995)
Arnott, S.; Smith, P. J. C.; Chandrasekaran, R. InCRC Handbook of Biochemistry;Molecular Biology: Nucleic Acids, 3rd ed.; Fasman, G. D., Ed.; CRC Press: Cleveland, OH, 1976; Vol. 2, pp 411.
10.1063/1.445869 / J. Chem. Phys. by Jorgensen W. L. (1983)
10.1016/0021-9991(77)90098-5 / J. Comput. Phys. by Ryckaert J.-P. (1977)
10.1103/PhysRev.159.98 / Phys. Rev. by Verlet L. (1967)
10.1063/1.449621 / J. Chem. Phys. by Brooks C. L. (1985)
10.1002/jcc.540040211 / J. Comput. Chem. by Brooks B. R. (1983)
10.1021/ja00153a017 / J. Am. Chem. Soc. by MacKerell A. D., Jr. (1995)
10.1146/annurev.bb.18.060189.002243 / Annu. Rev. Biophys. Biophys. Chem. by Beveridge D. L. (1989)
10.1021/j100119a043 / J. Phys. Chem. by Boczko E. M. (1993)
10.1002/jcc.540130812 / J. Comput. Chem. by Kumar S. (1992)
10.1016/0022-2836(71)90324-X / J. Mol. Biol. by Lee B. (1971)
10.1016/S0006-3495(95)80098-6 / Biophys. J. by Norberg J. (1995)

Dates

Type	When
Created	23 years, 1 month ago (July 26, 2002, 12:43 a.m.)
Deposited	3 years, 11 months ago (Sept. 22, 2021, 5:46 p.m.)
Indexed	1 year, 1 month ago (Aug. 4, 2024, 4:34 p.m.)
Issued	29 years, 8 months ago (Jan. 1, 1996)
Published	29 years, 8 months ago (Jan. 1, 1996)
Published Online	29 years, 6 months ago (Feb. 15, 1996)
Published Print	29 years, 8 months ago (Jan. 1, 1996)

Funders 0

None

BibTeX

@article{Norberg_1996, title={Conformational Free Energy Landscape of ApApA from Molecular Dynamics Simulations}, volume={100}, ISSN={1541-5740}, url={http://dx.doi.org/10.1021/jp952950q}, DOI={10.1021/jp952950q}, number={7}, journal={The Journal of Physical Chemistry}, publisher={American Chemical Society (ACS)}, author={Norberg, Jan and Nilsson, Lennart}, year={1996}, month=jan, pages={2550–2554} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2024,
        8,
        4
      ]
    ],
    "date-time": "2024-08-04T20:34:13Z",
    "timestamp": 1722803653390
  },
  "reference-count": 28,
  "publisher": "American Chemical Society (ACS)",
  "issue": "7",
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        1996,
        1,
        1
      ]
    ]
  },
  "DOI": "10.1021/jp952950q",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2002,
        7,
        26
      ]
    ],
    "date-time": "2002-07-26T04:43:17Z",
    "timestamp": 1027658597000
  },
  "page": "2550-2554",
  "source": "Crossref",
  "is-referenced-by-count": 31,
  "title": "Conformational Free Energy Landscape of ApApA from Molecular Dynamics Simulations",
  "prefix": "10.1021",
  "volume": "100",
  "author": [
    {
      "given": "Jan",
      "family": "Norberg",
      "sequence": "first",
      "affiliation": [
        {
          "name": "Center for Structural Biochemistry, Department of Biosciences at Novum, Karolinska Institutet, S-141 57 Huddinge, Sweden"
        }
      ]
    },
    {
      "given": "Lennart",
      "family": "Nilsson",
      "sequence": "additional",
      "affiliation": [
        {
          "name": "Center for Structural Biochemistry, Department of Biosciences at Novum, Karolinska Institutet, S-141 57 Huddinge, Sweden"
        }
      ]
    }
  ],
  "member": "316",
  "published-online": {
    "date-parts": [
      [
        1996,
        2,
        15
      ]
    ]
  },
  "reference": [
    {
      "key": "jp952950qb00001/jp952950qb00001_1",
      "volume-title": "Principles of Nucleic Acid Structure",
      "author": "Saenger W.",
      "year": "1988"
    },
    {
      "key": "jp952950qb00002/jp952950qb00002_1",
      "doi-asserted-by": "crossref",
      "first-page": "861",
      "DOI": "10.1016/0006-291X(66)90567-5",
      "volume": "23",
      "author": "Hanlon S.",
      "year": "1966",
      "journal-title": "Biochem. Biophys. Res. Commun."
    },
    {
      "key": "jp952950qb00003/jp952950qb00003_1",
      "doi-asserted-by": "crossref",
      "first-page": "99",
      "DOI": "10.1016/0003-9861(61)90016-9",
      "volume": "94",
      "author": "Herskovits T. T.",
      "year": "1961",
      "journal-title": "Arch. Biochem. Biophys."
    },
    {
      "key": "jp952950qb00004/jp952950qb00004_1",
      "doi-asserted-by": "crossref",
      "first-page": "4993",
      "DOI": "10.1021/ja00090a057",
      "volume": "116",
      "author": "Newcomb L. F.",
      "year": "1994",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "jp952950qb00005/jp952950qb00005_1",
      "doi-asserted-by": "crossref",
      "first-page": "91",
      "DOI": "10.1016/0022-2836(72)90494-9",
      "volume": "65",
      "author": "Lowe M. J.",
      "year": "1972",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "jp952950qb00006/jp952950qb00006_1",
      "doi-asserted-by": "crossref",
      "first-page": "167",
      "DOI": "10.1002/prot.340210302",
      "volume": "21",
      "author": "Bryngelson J. D.",
      "year": "1995",
      "journal-title": "Proteins"
    },
    {
      "key": "jp952950qb00007/jp952950qb00007_1",
      "doi-asserted-by": "crossref",
      "first-page": "1598",
      "DOI": "10.1126/science.1749933",
      "volume": "254",
      "author": "Frauenfelder H.",
      "year": "1991",
      "journal-title": "Science"
    },
    {
      "key": "jp952950qb00008/jp952950qb00008_1",
      "doi-asserted-by": "crossref",
      "first-page": "1727",
      "DOI": "10.1107/S0567740876006316",
      "volume": "32",
      "author": "Suck D.",
      "year": "1976",
      "journal-title": "Acta Crystallogr."
    },
    {
      "key": "jp952950qb00009/jp952950qb00009_1",
      "doi-asserted-by": "crossref",
      "first-page": "767",
      "DOI": "10.1080/07391102.1986.10508460",
      "volume": "3",
      "author": "Stone M. P.",
      "year": "1986",
      "journal-title": "J. Biomol. Struct. Dyn."
    },
    {
      "key": "jp952950qb00010/jp952950qb00010_1",
      "doi-asserted-by": "crossref",
      "first-page": "65",
      "DOI": "10.1016/S0022-2836(65)80080-8",
      "volume": "13",
      "author": "Cantor C. R.",
      "year": "1965",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "jp952950qb00011/jp952950qb00011_1",
      "doi-asserted-by": "crossref",
      "first-page": "357",
      "DOI": "10.1111/j.1432-1033.1983.tb07836.x",
      "volume": "137",
      "author": "Lee C.-H.",
      "year": "1983",
      "journal-title": "Eur. J. Biochem."
    },
    {
      "key": "jp952950qb00012/jp952950qb00012_1",
      "doi-asserted-by": "crossref",
      "first-page": "433",
      "DOI": "10.1002/jcc.540150407",
      "volume": "15",
      "author": "Ghomi M.",
      "year": "1994",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "jp952950qb00013/jp952950qb00013_1",
      "doi-asserted-by": "crossref",
      "first-page": "812",
      "DOI": "10.1016/S0006-3495(94)80541-7",
      "volume": "67",
      "author": "Norberg J.",
      "year": "1994",
      "journal-title": "Biophys. J."
    },
    {
      "key": "jp952950qb00014/jp952950qb00014_1",
      "doi-asserted-by": "crossref",
      "first-page": "219",
      "DOI": "10.1016/0009-2614(94)00507-9",
      "volume": "224",
      "author": "Norberg J.",
      "year": "1994",
      "journal-title": "Chem. Phys. Lett."
    },
    {
      "key": "jp952950qb00015/jp952950qb00015_1",
      "doi-asserted-by": "crossref",
      "first-page": "10832",
      "DOI": "10.1021/ja00149a006",
      "volume": "117",
      "author": "Norberg J.",
      "year": "1995",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "jp952950qb00016/jp952950qb00016_1",
      "doi-asserted-by": "crossref",
      "first-page": "13056",
      "DOI": "10.1021/j100035a002",
      "volume": "99",
      "author": "Norberg J.",
      "year": "1995",
      "journal-title": "J. Phys. Chem."
    },
    {
      "key": "jp952950qb00017/jp952950qb00017_1",
      "unstructured": "Arnott, S.; Smith, P. J. C.; Chandrasekaran, R. InCRC Handbook of Biochemistry;Molecular Biology:\u2009Nucleic Acids, 3rd ed.; Fasman, G. D., Ed.; CRC Press:\u2009 Cleveland, OH, 1976; Vol. 2, pp 411."
    },
    {
      "key": "jp952950qb00018/jp952950qb00018_1",
      "doi-asserted-by": "crossref",
      "first-page": "926",
      "DOI": "10.1063/1.445869",
      "volume": "79",
      "author": "Jorgensen W. L.",
      "year": "1983",
      "journal-title": "J. Chem. Phys."
    },
    {
      "key": "jp952950qb00019/jp952950qb00019_1",
      "doi-asserted-by": "crossref",
      "first-page": "327",
      "DOI": "10.1016/0021-9991(77)90098-5",
      "volume": "23",
      "author": "Ryckaert J.-P.",
      "year": "1977",
      "journal-title": "J. Comput. Phys."
    },
    {
      "key": "jp952950qb00020/jp952950qb00020_1",
      "doi-asserted-by": "crossref",
      "first-page": "98",
      "DOI": "10.1103/PhysRev.159.98",
      "volume": "159",
      "author": "Verlet L.",
      "year": "1967",
      "journal-title": "Phys. Rev."
    },
    {
      "key": "jp952950qb00021/jp952950qb00021_1",
      "doi-asserted-by": "crossref",
      "first-page": "5897",
      "DOI": "10.1063/1.449621",
      "volume": "83",
      "author": "Brooks C. L.",
      "year": "1985",
      "journal-title": "J. Chem. Phys."
    },
    {
      "key": "jp952950qb00022/jp952950qb00022_1",
      "doi-asserted-by": "crossref",
      "first-page": "187",
      "DOI": "10.1002/jcc.540040211",
      "volume": "4",
      "author": "Brooks B. R.",
      "year": "1983",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "jp952950qb00023/jp952950qb00023_1",
      "doi-asserted-by": "crossref",
      "first-page": "11946",
      "DOI": "10.1021/ja00153a017",
      "volume": "117",
      "author": "MacKerell A. D., Jr.",
      "year": "1995",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "jp952950qb00024/jp952950qb00024_1",
      "doi-asserted-by": "crossref",
      "first-page": "431",
      "DOI": "10.1146/annurev.bb.18.060189.002243",
      "volume": "18",
      "author": "Beveridge D. L.",
      "year": "1989",
      "journal-title": "Annu. Rev. Biophys. Biophys. Chem."
    },
    {
      "key": "jp952950qb00025/jp952950qb00025_1",
      "doi-asserted-by": "crossref",
      "first-page": "4509",
      "DOI": "10.1021/j100119a043",
      "volume": "97",
      "author": "Boczko E. M.",
      "year": "1993",
      "journal-title": "J. Phys. Chem."
    },
    {
      "key": "jp952950qb00026/jp952950qb00026_1",
      "doi-asserted-by": "crossref",
      "first-page": "1011",
      "DOI": "10.1002/jcc.540130812",
      "volume": "13",
      "author": "Kumar S.",
      "year": "1992",
      "journal-title": "J. Comput. Chem."
    },
    {
      "key": "jp952950qb00028/jp952950qb00028_1",
      "doi-asserted-by": "crossref",
      "first-page": "379",
      "DOI": "10.1016/0022-2836(71)90324-X",
      "volume": "55",
      "author": "Lee B.",
      "year": "1971",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "jp952950qb00029/jp952950qb00029_1",
      "doi-asserted-by": "crossref",
      "first-page": "2277",
      "DOI": "10.1016/S0006-3495(95)80098-6",
      "volume": "69",
      "author": "Norberg J.",
      "year": "1995",
      "journal-title": "Biophys. J."
    }
  ],
  "container-title": "The Journal of Physical Chemistry",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://pubs.acs.org/doi/pdf/10.1021/jp952950q",
      "content-type": "unspecified",
      "content-version": "vor",
      "intended-application": "similarity-checking"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2021,
        9,
        22
      ]
    ],
    "date-time": "2021-09-22T21:46:37Z",
    "timestamp": 1632347197000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://pubs.acs.org/doi/10.1021/jp952950q"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        1996,
        1,
        1
      ]
    ]
  },
  "references-count": 28,
  "journal-issue": {
    "issue": "7",
    "published-print": {
      "date-parts": [
        [
          1996,
          1,
          1
        ]
      ]
    }
  },
  "alternative-id": [
    "10.1021/jp952950q"
  ],
  "URL": "http://dx.doi.org/10.1021/jp952950q",
  "relation": {},
  "ISSN": [
    "0022-3654",
    "1541-5740"
  ],
  "subject": [],
  "container-title-short": "J. Phys. Chem.",
  "published": {
    "date-parts": [
      [
        1996,
        1,
        1
      ]
    ]
  }
}