Crossref journal-article
American Chemical Society (ACS)
Journal of the American Chemical Society (316)
Bibliography

Špačková, N., Berger, I., & Šponer, J. (1999). Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules. Journal of the American Chemical Society, 121(23), 5519–5534.

Authors 3
  1. Nad'a Špačková (first)
  2. Imre Berger (additional)
  3. Jiří Šponer (additional)
References 88 Referenced 157
  1. 10.1073/pnas.85.18.6622 / Proc. Natl. Acad. Sci. U.S.A. by Moyzis R. K. (1988)
  2. 10.1016/0092-8674(87)90577-0 / Cell by Henderson E. R. (1987)
  3. {'key': 'ja984449sb00001/ja984449sb00001_3', 'first-page': '3019', 'volume': '78', 'author': 'Klobutcher L. A.', 'year': '1986', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Klobutcher L. A. (1986)
  4. 10.1073/pnas.90.8.3393 / Natl. Acad. Sci. U.S.A. by Sundquist W. I. (1993)
  5. 10.1093/nar/20.1.49 / J. Nucleic Acids Res. by Murchie A. I. (1992)
  6. 10.1021/bi00099a022 / Biochemistry by Akman S. A. (1991)
  7. {'key': 'ja984449sb00002/ja984449sb00002_1', 'first-page': '778', 'volume': '332', 'author': 'Cech T. R.', 'year': '1988', 'journal-title': 'Nature'} / Nature by Cech T. R. (1988)
  8. 10.1073/pnas.79.8.2495 / Proc. Natl. Acad. Sci. U.S.A. by Lipps H. J. (1982)
  9. {'key': 'ja984449sb00002/ja984449sb00002_3', 'first-page': '8898', 'volume': '15', 'author': 'Oka Y.', 'year': '1987', 'journal-title': 'Nucleic Acids Res.'} / Nucleic Acids Res. by Oka Y. (1987)
  10. 10.1016/0092-8674(89)90610-7 / Cell by Williamson J. R. (1989)
  11. 10.1038/342825a0 / Nature by Sundquist W. I. (1989)
  12. {'key': 'ja984449sb00003/ja984449sb00003_3', 'first-page': '366', 'volume': '334', 'author': 'Sen D.', 'year': '1988', 'journal-title': 'Nature'} / Nature by Sen D. (1988)
  13. {'key': 'ja984449sb00004/ja984449sb00004_1', 'first-page': '131', 'volume': '356', 'author': 'Kang C. H.', 'year': '1992', 'journal-title': 'Nature'} / Nature by Kang C. H. (1992)
  14. 10.1038/356168a0 / Nature by Smith F. W. (1992)
  15. 10.1126/science.8036494 / Science by Laughlan G. (1994)
  16. 10.1006/jmbi.1997.1292 / J. Mol. Biol. by Phillips K. (1997)
  17. 10.1126/science.281.5379.883a / Science by Phillips K. (1998)
  18. {'key': 'ja984449sb00004/ja984449sb00004_6', 'first-page': '1008', 'volume': '3', 'author': 'Smith F. W.', 'year': '1995', 'journal-title': 'Structure'} / Structure by Smith F. W. (1995)
  19. 10.1006/jmbi.1995.0644 / J. Mol. Biol. by Kettani A. (1995)
  20. (g) Aboud-ela, F.; Murchie, A. I. H.; Norman, D. G.; Lilley, D. M. J.1994,243, 458−471. (10.1006/jmbi.1994.1672)
  21. 10.1006/jmbi.1998.2031 / J. Mol. Biol. by Bouaziz S. (1998)
  22. {'key': 'ja984449sb00004/ja984449sb00004_10', 'first-page': '223', 'volume': '2', 'author': 'Schultze P.', 'year': '1994', 'journal-title': 'Curr. Biol.'} / Curr. Biol. by Schultze P. (1994)
  23. {'key': 'ja984449sb00005/ja984449sb00005_1', 'first-page': '6080', 'volume': '116', 'author': 'Hardin C. C.', 'year': '1994', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Hardin C. C. (1994)
  24. 10.1016/S0006-3495(95)79979-9 / Biophys. J. by Mohanty D. (1995)
  25. 10.1016/S0301-4622(97)00037-9 / Biophys. Chem. by Tohl J. (1997)
  26. 10.1016/S0006-3495(98)77585-X / Biophys. J. by Strahan G. D. (1998)
  27. 10.1002/bip.360340908 / Biopolymers by Mohanty D. (1994)
  28. 10.1093/nar/22.24.5447 / Nucleic Acids Res. by Strahan G. D. (1994)
  29. 10.1093/nar/20.15.4061 / Nucleic Acids Res. by Balagurumoorthy P. (1992)
  30. {'key': 'ja984449sb00006/ja984449sb00006_1', 'first-page': '8348', 'volume': '99', 'author': 'York D. M.', 'year': '1993', 'journal-title': 'J. Chem. Phys.'} / J. Chem. Phys. by York D. M. (1993)
  31. {'key': 'ja984449sb00006/ja984449sb00006_2', 'first-page': '5002', 'volume': '117', 'author': 'York D. M.', 'year': '1995', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by York D. M. (1995)
  32. {'key': 'ja984449sb00007/ja984449sb00007_1', 'first-page': '234', 'volume': '243', 'author': 'Lee H.', 'year': '1995', 'journal-title': 'Chem. Phys. Let.'} / Chem. Phys. Let. by Lee H. (1995)
  33. 10.1021/ja00124a002 / J. Am. Chem. Soc. by Cornell W. D. (1995)
  34. 10.1016/S0006-3495(97)78049-4 / Biophys. J. by Šponer J. (1997)
  35. 10.1016/0959-440X(95)80077-8 / Curr. Opin. Struct. Biol. by Halgren T. A. (1995)
  36. 10.1002/(SICI)1096-987X(19970715)18:9<1136::AID-JCC3>3.0.CO;2-S / J. Comput. Chem. by Hobza P. (1997)
  37. 10.1021/bi00050a006 / Biochemistry by Weerasinghe S. (1995)
  38. {'key': 'ja984449sb00011/ja984449sb00011_2', 'first-page': '444', 'volume': '259', 'author': 'Cheatham T. E.', 'year': '1996', 'journal-title': 'J. Mol. Biol.'} / J. Mol. Biol. by Cheatham T. E. (1996)
  39. 10.1021/ja970601z / J. Am. Chem. Soc. by Shields G. C. (1997)
  40. {'key': 'ja984449sb00011/ja984449sb00011_4', 'first-page': '69', 'volume': '119', 'author': 'Young M. A.', 'year': '1997', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Young M. A. (1997)
  41. 10.1016/S0959-440X(96)80046-7 / Curr. Opin. Struct. Biol. by Louise-May S. (1996)
  42. 10.1021/jp971180a / J. Phys. Chem. B by Feig M. (1997)
  43. 10.1021/ja9723444 / J. Am. Chem. Soc. by Shields G. C. (1998)
  44. 10.1016/S0959-440X(98)80044-4 / Curr. Opin. Struct. Biol. by Auffinger P. (1998)
  45. 10.1006/jmbi.1998.1962 / J. Mol. Biol. by Young M. A. (1998)
  46. {'key': 'ja984449sb00011/ja984449sb00011_10', 'first-page': '9409', 'volume': '120', 'author': 'Srinivasan J.', 'year': '1998', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Srinivasan J. (1998)
  47. 10.1080/07391102.1998.10508245 / J. Biomol. Struct. Dyn. by Cheatham T. E. (1998)
  48. {'key': 'ja984449sb00011/ja984449sb00011_12', 'first-page': '5782', 'volume': '120', 'author': 'Simmerling C.', 'year': '1998', 'journal-title': 'J. Am. Chem. Soc.'} / J. Am. Chem. Soc. by Simmerling C. (1998)
  49. {'key': 'ja984449sb00011/ja984449sb00011_13', 'first-page': '288', 'volume': '99', 'author': 'Cheatham T. E.', 'year': '1998', 'journal-title': 'Theor. Chem. Acc.'} / Theor. Chem. Acc. by Cheatham T. E. (1998)
  50. (o) Cheatham, T. E., III; Kollman, P. A. InJ. Structure, Motion, Interaction and Expression ofBiological Macromolecules; Sarma, R. H., Sarma, M. H., Eds.; Adenine Press:  Guilderland, NY, 1998; pp 99−116.
  51. 10.1080/07391102.1997.10508160 / J. Biomol. Struct. Dyn. by Souza O. N. (1997)
  52. 10.1080/07391102.1999.10508297 / J. Biomol. Struct. Dyn. by Cheatham T. E. (1999)
  53. 10.1021/ja9743497 / J. Am. Chem. Soc. by Špačková N. (1998)
  54. 10.1038/363561a0 / Nature by Gehring K. (1993)
  55. 10.1006/jmbi.1996.0472 / J. Mol. Biol. by Nonin S. (1996)
  56. {'key': 'ja984449sb00013/ja984449sb00013_3', 'first-page': '120', 'volume': '3', 'author': 'Leroy J.-L.', 'year': '1995', 'journal-title': 'Structure'} / Structure by Leroy J.-L. (1995)
  57. {'key': 'ja984449sb00013/ja984449sb00013_4', 'first-page': '13545', 'volume': '33', 'author': 'Chen L.', 'year': '1994', 'journal-title': 'Biochemistry'} / Biochemistry by Chen L. (1994)
  58. {'key': 'ja984449sb00013/ja984449sb00013_5', 'first-page': '11640', 'volume': '91', 'author': 'Kang C.', 'year': '1994', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Kang C. (1994)
  59. {'key': 'ja984449sb00013/ja984449sb00013_6', 'first-page': '425', 'volume': '2', 'author': 'Berger I.', 'year': '1995', 'journal-title': 'Nat. Struct. Biol.'} / Nat. Struct. Biol. by Berger I. (1995)
  60. {'key': 'ja984449sb00013/ja984449sb00013_7', 'first-page': '12121', 'volume': '93', 'author': 'Berger I.', 'year': '1996', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Berger I. (1996)
  61. 10.1006/jmbi.1998.2334 / J. Mol. Biol. by Gallego J. (1999)
  62. 10.1080/07391102.1996.10508883 / J. Biomol. Struct. Dyn. by Šponer J. (1996)
  63. 10.1021/ja981121q / J. Am. Chem. Soc. by Soliva R. (1998)
  64. {'key': 'ja984449sb00016/ja984449sb00016_1', 'volume-title': 'University of California', 'author': 'Pearlman D. A.'} / University of California by Pearlman D. A.
  65. 10.1063/1.445869 / J. Chem. Phys. by Jorgensen W. L. (1983)
  66. 10.1002/(SICI)1096-987X(199805)19:7<726::AID-JCC4>3.0.CO;2-S / J. Comput. Chem. by Harvey S. C. (1998)
  67. 10.1021/ja963641w / J. Am. Chem. Soc. by Cheatham T. E. (1997)
  68. 10.1016/0263-7855(88)80054-7 / J. Mol. Graph. by Ferrin T. E. (1988)
  69. {'key': 'ja984449sb00020/ja984449sb00020_1', 'volume-title': 'Gaussian', 'author': 'Frisch M. J.', 'year': '1995'} / Gaussian by Frisch M. J. (1995)
  70. 10.1002/bip.360320205 / Biopolymers by Friedman R. A. (1992)
  71. 10.1021/jp980769m / J. Phys. Chem. A by Šponer J. (1998)
  72. {'key': 'ja984449sb00029/ja984449sb00029_1', 'volume-title': 'Na+', 'author': 'One'} / Na+ by One
  73. 10.1021/bi00418a044 / Biochemistry by Wolk S. K. (1988)
  74. {'key': 'ja984449sb00033/ja984449sb00033_1', 'first-page': '3615', 'volume': '82', 'author': 'Wang A. H.', 'year': '1985', 'journal-title': 'Natl. Acad. Sci. U.S.A.'} / Natl. Acad. Sci. U.S.A. by Wang A. H. (1985)
  75. 10.1080/07391102.1997.10508967 / J. Biomol. Struct. Dyn. by Jing N. (1997)
  76. {'key': 'ja984449sb00036/ja984449sb00036_1', 'first-page': '11402', 'volume': '30', 'author': 'Egli M.', 'year': '1991', 'journal-title': 'Biochemistry'} / Biochemistry by Egli M. (1991)
  77. {'key': 'ja984449sb00037/ja984449sb00037_1', 'first-page': '13137', 'volume': '32', 'author': 'Xu Q.', 'year': '1993', 'journal-title': 'Biochemistry'} / Biochemistry by Xu Q. (1993)
  78. {'key': 'ja984449sb00037/ja984449sb00037_2', 'first-page': '243', 'volume': '8', 'author': 'Hud N. V.', 'year': '1999', 'journal-title': 'J. Mol. Biol.'} / J. Mol. Biol. by Hud N. V. (1999)
  79. 10.1080/07391102.1997.10508161 / J. Biomol. Struct. Dyn. by Šponer J. (1997)
  80. 10.1021/ja00315a052 / J. Am. Chem. Soc. by Weiner S. J. (1984)
  81. 10.1038/344366a0 / Nature by Sen D. (1990)
  82. {'key': 'ja984449sb00042/ja984449sb00042_1', 'first-page': '3312', 'volume': '268', 'author': 'Weisman-Schomer P.', 'year': '1993', 'journal-title': 'J. Biol. Chem.'} / J. Biol. Chem. by Weisman-Schomer P. (1993)
  83. 10.1016/0092-8674(93)90467-5 / Cell by Fang G. (1993)
  84. {'key': 'ja984449sb00042/ja984449sb00042_3', 'first-page': '3161', 'volume': '90', 'author': 'Liu Z.', 'year': '1993', 'journal-title': 'Proc. Natl. Acad. Sci. U.S.A.'} / Proc. Natl. Acad. Sci. U.S.A. by Liu Z. (1993)
  85. 10.1021/bi00174a034 / Biochemistry by Schierer T. (1994)
  86. 10.1016/S0960-9822(00)00093-2 / Curr. Biol. by Ellington A. D. (1994)
  87. 10.1146/annurev.bi.64.070195.003555 / Annu. Rev. Biochem. by Gold L. (1995)
  88. 10.1023/A:1016281324761 / Pharm. Res. by Stull R. A. (1995)
Dates
Type When
Created 23 years, 1 month ago (July 26, 2002, 1:36 a.m.)
Deposited 2 years, 5 months ago (March 30, 2023, 9:36 p.m.)
Indexed 2 months, 1 week ago (June 26, 2025, 9:29 a.m.)
Issued 26 years, 3 months ago (May 27, 1999)
Published 26 years, 3 months ago (May 27, 1999)
Published Online 26 years, 3 months ago (May 27, 1999)
Published Print 26 years, 3 months ago (June 1, 1999)
Funders 0

None

@article{_pa_kov__1999, title={Nanosecond Molecular Dynamics Simulations of Parallel and Antiparallel Guanine Quadruplex DNA Molecules}, volume={121}, ISSN={1520-5126}, url={http://dx.doi.org/10.1021/ja984449s}, DOI={10.1021/ja984449s}, number={23}, journal={Journal of the American Chemical Society}, publisher={American Chemical Society (ACS)}, author={Špačková, Nad’a and Berger, Imre and Šponer, Jiří}, year={1999}, month=may, pages={5519–5534} }