DOI: 10.1021/ct049950r. Normal-Mode Analysis of Circular DNA at the Base-Pair Level. 1. Comparison of Computed Motions with the Predicted Behavior of an Ideal Elastic Rod

Normal-Mode Analysis of Circular DNA at the Base-Pair Level. 1. Comparison of Computed Motions with the Predicted Behavior of an Ideal Elastic Rod

10.1021/ct049950r

Crossref journal-article

American Chemical Society (ACS)

Journal of Chemical Theory and Computation (316)

Bibliography

Matsumoto, A., Tobias, I., & Olson, W. K. (2004). Normal-Mode Analysis of Circular DNA at the Base-Pair Level. 1. Comparison of Computed Motions with the Predicted Behavior of an Ideal Elastic Rod. Journal of Chemical Theory and Computation, 1(1), 117â129.

Authors 3

Atsushi Matsumoto (first)
Irwin Tobias (additional)
Wilma K. Olson (additional)

References 33 Referenced 15

10.1016/S0006-3495(02)75147-3 / Biophys. J. by Matsumoto A. (2002)
{'key': 'ct049950rb00002/ct049950rb00002_1', 'first-page': '3700', 'volume': '80', 'author': 'Gō N.', 'year': '1983', 'journal-title': 'Proc. Natl. Acad. Sci., U.S.A.'} / Proc. Natl. Acad. Sci., U.S.A. by Gō N. (1983)
10.1016/0022-2836(85)90230-X / J. Mol. Biol. by Levitt M. (1985)
10.1002/prot.340020407 / Proteins by Nishikawa T. (1987)
10.1016/0022-2836(89)90324-0 / J. Mol. Biol. by Diekmann S. (1989)
10.1006/jmbi.1995.0462 / J. Mol. Biol. by El Hassan M. A. (1995)
{'key': 'ct049950rb00007/ct049950rb00007_1', 'first-page': '170', 'volume-title': 'Landolt-Börnstein Numerical Data and Functional Relationships in Science and Technology', 'author': 'Chandrasekaran R.', 'year': '1989'} / Landolt-Börnstein Numerical Data and Functional Relationships in Science and Technology by Chandrasekaran R. (1989)
10.1073/pnas.95.19.11163 / Proc. Natl. Acad. Sci., U.S.A. by Olson W. K. (1998)
{'key': 'ct049950rb00009/ct049950rb00009_1', 'first-page': '554', 'volume': '232', 'author': 'Olson W. K.', 'year': '1993', 'journal-title': 'J. Mol. Biol.'} / J. Mol. Biol. by Olson W. K. (1993)
10.1002/recl.19490681203 / Rec. Trav. Chim. by Kratky O. (1949)
10.1016/S0022-2836(83)80198-3 / J. Mol. Biol. by Shore D. (1983)
10.1016/0022-2836(84)90404-2 / J. Mol. Biol. by Horowitz D. S. (1984)
10.1080/07391102.1985.10507616 / J. Biomol. Struct. Dynam. by Frank-Kamenetskii M. D. (1985)
10.1007/BF00420826 / Meccanica by Coleman B. D. (1996)
10.1016/S0006-3495(98)77962-7 / Biophys. J. by Tobias I (1998)
{'key': 'ct049950rb00016/ct049950rb00016_1', 'first-page': '237', 'volume': '30', 'author': 'Song L. U.', 'year': '1990', 'journal-title': 'Biopolymers'} / Biopolymers by Song L. U. (1990)
10.1016/S0006-3495(02)75344-7 / Biophys. J. by Okonogi T. M. (2002)
10.1143/JPSJ.53.3269 / J. Phys. Soc. Jpn. by Braun W. (1984)
10.1143/JPSJ.54.4053 / J. Phys. Soc. Jpn. by Higo J. (1985)
10.1006/jmbi.2001.4987 / J. Mol. Biol. by Olson W. K. (2001)
{'key': 'ct049950rb00021/ct049950rb00021_1', 'first-page': '39', 'volume': '43', 'author': 'Wang J. C', 'year': '1969', 'journal-title': 'J. Mol. Biol.'} / J. Mol. Biol. by Wang J. C (1969)
10.1073/pnas.72.11.4275 / Proc. Natl. Acad. Sci., U.S.A. by Depew R. E. (1975)
{'key': 'ct049950rb00023/ct049950rb00023_1', 'first-page': '600', 'volume': '17', 'author': 'Anderson P.', 'year': '1978', 'journal-title': 'Biochemistry'} / Biochemistry by Anderson P. (1978)
{'key': 'ct049950rb00024/ct049950rb00024_1', 'volume-title': 'Theory of Elasticity', 'author': 'Landau L. D.', 'year': '1986'} / Theory of Elasticity by Landau L. D. (1986)
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10.1073/pnas.75.2.640 / Proc. Natl. Acad. Sci., U.S.A. by Levitt M (1978)
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10.1021/ct049949s / Normal-mode analysis of circular DNA at the base-pair level. 2. Large-scale configurational transformation of a naturally curved molecule by Matsumoto A. (2005)
10.1107/S0021889891004399 / J. Appl. Crystallogr. by Kraulis P. J. (1991)

Dates

Type	When
Created	20 years, 7 months ago (Jan. 11, 2005, 12:33 a.m.)
Deposited	2 years, 5 months ago (March 14, 2023, 11:53 p.m.)
Indexed	1 year ago (Aug. 12, 2024, 7:53 a.m.)
Issued	20 years, 8 months ago (Dec. 21, 2004)
Published	20 years, 8 months ago (Dec. 21, 2004)
Published Online	20 years, 8 months ago (Dec. 21, 2004)
Published Print	20 years, 7 months ago (Jan. 1, 2005)

Funders 0

None

BibTeX

@article{Matsumoto_2004, title={Normal-Mode Analysis of Circular DNA at the Base-Pair Level. 1. Comparison of Computed Motions with the Predicted Behavior of an Ideal Elastic Rod}, volume={1}, ISSN={1549-9626}, url={http://dx.doi.org/10.1021/ct049950r}, DOI={10.1021/ct049950r}, number={1}, journal={Journal of Chemical Theory and Computation}, publisher={American Chemical Society (ACS)}, author={Matsumoto, Atsushi and Tobias, Irwin and Olson, Wilma K.}, year={2004}, month=dec, pages={117–129} }

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