Abstract
AbstractThere has been enormous progress during the last few years in the determination of three-dimensional biological structures by single particle electron cryomicroscopy (cryoEM), allowing maps to be obtained with higher resolution and from fewer images than required previously. This is due principally to the introduction of a new type of direct electron detector that has 2- to 3-fold higher detective quantum efficiency than available previously, and to the improvement of the computational algorithms for image processing. In spite of the great strides that have been made, quantitative analysis shows that there are still significant gains to be made provided that the problems associated with image degradation can be solved, possibly by minimising beam-induced specimen movement and charge build up during imaging. If this can be achieved, it should be possible to obtain near atomic resolution structures of smaller single particles, using fewer images and resolving more conformational states than at present, thus realising the full potential of the method. The recent popularity of cryoEM for molecular structure determination also highlights the need for lower cost microscopes, so we encourage development of an inexpensive, 100 keV electron cryomicroscope with a high-brightness field emission gun to make the method accessible to individual groups or institutions that cannot afford the investment and running costs of a state-of-the-art 300 keV installation. A key requisite for successful high-resolution structure determination by cryoEM includes interpretation of images and optimising the biochemistry and grid preparation to obtain nicely distributed macromolecules of interest. We thus include in this review a gallery of cryoEM micrographs that shows illustrative examples of single particle images of large and small macromolecular complexes.
References
146
Referenced
175
10.7554/eLife.03665
10.1002/(SICI)1097-0029(20000501)49:3<269::AID-JEMT5>3.0.CO;2-B
10.1038/nature13686
10.1016/j.jsb.2015.11.006
10.1016/0304-3991(96)00045-9
10.1126/science.1259530
10.1016/j.sbi.2015.07.002
10.1016/j.str.2014.01.011
10.1016/0092-8674(91)90578-M
10.1016/S0022-5320(76)80099-8
10.1038/34465
10.1016/j.jmb.2005.02.031
10.1016/j.jsb.2015.08.007
10.1006/jsbi.1996.0004
{'key': 'S0033583516000068_ref150', 'first-page': '1', 'article-title': 'An atomic model of brome mosaic virus using direct electron detection and real-space optimization', 'volume': '5', 'author': 'Wang', 'year': '2014', 'journal-title': 'Nature Communications'}
/ Nature Communications / An atomic model of brome mosaic virus using direct electron detection and real-space optimization by Wang (2014)10.1111/j.1365-2818.1987.tb01333.x
10.1016/0304-3991(79)90026-3
{'key': 'S0033583516000068_ref137', 'first-page': '187', 'article-title': 'Use of multivariate statistics in analyzing the images of biological macromolecules', 'volume': '6', 'author': 'van Heel', 'year': '1981', 'journal-title': 'Ultramicroscopy'}
/ Ultramicroscopy / Use of multivariate statistics in analyzing the images of biological macromolecules by van Heel (1981)10.1016/j.str.2010.06.006
10.1073/pnas.0905481107
10.1016/0022-2836(75)90212-0
10.1016/j.sbi.2015.07.009
10.1016/0304-3991(81)90001-2
10.1038/nature01748
10.1016/0168-9002(93)90255-G
10.1038/nmeth.2115
10.1016/j.jsb.2004.06.006
10.1073/pnas.0711623105
10.1016/0022-2836(88)90384-1
10.1126/science.186.4168.1036
10.1016/j.jsb.2005.03.010
10.1038/nmeth992
10.1016/j.jsb.2013.04.014
10.1006/jsbi.1998.4014
10.1016/j.ultramic.2005.03.006
10.1515/zna-1976-1117
/ Zeitschrift Fur Naturforschung Section a-a Journal of Physical Sciences / 3-Dimensional electron-microscopy of individual biological objects. 3. Experimental results on Yeast Fatty-Acid Synthetase by Hoppe (1976)10.1107/S0567740881002392
10.1016/j.ultramic.2010.10.010
10.1017/S0033583511000102
10.7554/eLife.01963
10.1016/0304-3991(92)90006-6
10.1016/j.str.2012.08.026
10.1016/0304-3991(84)90095-0
10.1016/S0092-8674(00)80690-X
10.1016/j.ultramic.2014.08.002
10.1016/S0304-3991(98)00025-4
10.1038/257028a0
10.1126/science.1846047
10.1016/S0304-3991(81)80221-5
10.1126/science.1076184
10.1038/367614a0
10.1126/science.1187433
10.1006/jsbi.2001.4339
10.1038/nature12822
10.1016/j.jsb.2012.07.010
10.1017/S0033583500004297
10.1006/jsbi.1999.4172
10.1107/S0108768188013710
10.1016/j.sbi.2011.01.008
10.7554/eLife.06980
10.1016/S0304-3991(97)00126-5
10.1063/1.4830355
10.1073/pnas.1009999107
10.1006/jsbi.2000.4314
10.1016/0304-3991(93)90216-K
10.1126/science.aaa1193
10.1038/nmeth.2472
10.1016/j.ultramic.2012.03.006
10.1098/rspb.1990.0057
10.1107/S0907444900009549
10.1017/S003358350000305X
10.1038/nmeth.3695
10.1016/j.jsb.2012.02.003
10.1006/jsbi.1996.0036
10.1016/j.nima.2005.03.023
10.1016/j.jsb.2013.08.005
10.1021/j150670a042
10.1016/0304-3991(93)90213-H
10.1016/j.ultramic.2015.05.017
10.1016/0968-4328(95)00054-8
10.1016/0304-3991(87)90147-1
10.1098/rspa.1970.0119
10.1016/0304-3991(93)90101-3
10.1016/j.jsb.2006.07.003
{'key': 'S0033583516000068_ref35', 'first-page': '97', 'article-title': 'Quantifoil: a support foil with holes of pre-defined size, shape and arrangement', 'volume': '74', 'author': 'Ermantraut', 'year': '1997', 'journal-title': 'European Journal of Cell Biology'}
/ European Journal of Cell Biology / Quantifoil: a support foil with holes of pre-defined size, shape and arrangement by Ermantraut (1997)10.1016/0022-2836(85)90202-5
10.1016/j.jsb.2015.09.014
10.1093/jmicro/dfp021
10.1038/nature09206
10.1038/308032a0
10.1016/0304-3991(88)90016-2
10.1038/srep07084
10.1006/jsbi.1999.4174
10.1111/j.1365-2818.1982.tb04625.x
10.1107/S1399004714025280
10.1083/jcb.115.3.597
10.1088/0022-3727/2/7/312
10.1016/j.bpj.2015.07.050
10.1016/j.str.2013.07.002
10.1073/pnas.1418377111
10.1017/S0033583500002900
10.1016/j.str.2011.12.014
10.1016/0304-3991(88)90129-5
10.1016/S0304-3991(98)00065-5
10.1016/j.cell.2010.03.041
10.1016/S0022-2836(05)80271-2
10.1016/S0065-227X(98)80003-8
10.1016/j.jsb.2009.12.020
10.1016/0304-3991(87)90078-7
10.1016/j.jsb.2012.09.006
10.1016/0022-2836(75)90167-9
10.1107/S0567739473000677
10.1016/S0304-3991(98)00056-4
10.1016/j.jsb.2006.05.004
10.1016/j.abb.2015.04.004
10.1016/0022-2836(83)90066-9
10.1016/j.ultramic.2004.08.008
10.1016/j.jmb.2003.07.013
10.1007/978-1-62703-776-1_18
10.1107/S0567740870003485
10.1016/S0304-3991(00)00052-8
10.1016/j.ultramic.2009.05.005
10.1038/386091a0
10.1016/j.jsb.2006.05.009
10.1016/j.ultramic.2013.06.004
10.1016/j.abb.2015.02.036
10.1016/j.ultramic.2009.07.004
10.1016/0304-3991(85)90069-5
10.1038/320533a0
10.1073/pnas.1314449110
10.1016/j.jsb.2005.12.003
10.1038/nature01830
10.1016/j.jsb.2007.09.013
10.1016/j.str.2007.09.003
10.1016/0022-2836(82)90282-0
10.1038/386088a0
10.1002/j.1460-2075.1986.tb04242.x
/ Embo Journal / 3-dimensional structure of clathrin cages in ice by Vigers (1986)10.1063/1.1713709
10.1016/j.ultramic.2009.04.002
10.1006/jmbi.1998.1668
10.1016/j.sbi.2007.07.006
10.1038/nmeth.2931
10.1016/S0022-5320(71)80118-1
10.1016/j.jsb.2013.07.005
10.7554/eLife.00461
10.1016/j.jsb.2006.04.005
Dates
Type | When |
---|---|
Created | 9 years ago (Aug. 1, 2016, 8:12 a.m.) |
Deposited | 4 years, 10 months ago (Sept. 24, 2020, 12:35 p.m.) |
Indexed | 2 weeks, 1 day ago (Aug. 6, 2025, 9:21 a.m.) |
Issued | 9 years, 7 months ago (Jan. 1, 2016) |
Published | 9 years, 7 months ago (Jan. 1, 2016) |
Published Online | 9 years, 1 month ago (July 22, 2016) |
Published Print | 9 years, 7 months ago (Jan. 1, 2016) |
@article{Vinothkumar_2016, title={Single particle electron cryomicroscopy: trends, issues and future perspective}, volume={49}, ISSN={1469-8994}, url={http://dx.doi.org/10.1017/s0033583516000068}, DOI={10.1017/s0033583516000068}, journal={Quarterly Reviews of Biophysics}, publisher={Cambridge University Press (CUP)}, author={Vinothkumar, Kutti R. and Henderson, Richard}, year={2016} }