Abstract
Though the structures presented in crystallographic models of macromolecules appear to possess rock-like solidity, real proteins and nucleic acids are not particularly rigid. Most structural work to date has centred upon the native state of macromolecules, the most probable macromolecular form. But the native state of a molecule is merely its most abundant form, certainly not its only form. Thermodynamics requires that all other possible structural forms, however improbable, must also exist, albeit with representation corresponding to the factor exp( —Gi/RT) for each state of free energyGi(see Moelwyn-Hughes, 1961), and one appreciates that each molecule within a population of molecules will in time explore the vast ensemble ofpossiblestructural states.
References
244
Referenced
1,051
10.1063/1.1731411
10.1021/ja00960a040
10.1016/0022-2836(78)90053-0
10.1016/0022-2836(74)90420-3
10.1016/S0065-3233(08)60190-4
10.1016/S0006-3495(80)84989-7
10.1016/0022-2836(79)90548-5
{'key': 'S0033583500005217_ref233', 'first-page': '549', 'volume-title': 'Protein Folding', 'author': 'Wüthrich', 'year': '1980'}
/ Protein Folding by Wüthrich (1980)10.1016/S0021-9258(18)62060-5
/ J. biol. Chem. / The correlation of ribo-nuclease exchange kinetics with the temperature induced transition by Woodward (1971)10.1073/pnas.66.4.1067
10.1146/annurev.bb.08.060179.000531
10.1016/S0021-9258(19)41918-2
/ J. biol. Chem. / The solvent dependence of hydrogen exchange kinetics of folded proteins by Woodward (1975)10.1016/S0021-9258(19)41917-0
/ J. biol. Chem. / Solvent accessibility in folded proteins: studies of hydrogen exchange in trypsin by Woodward (1975){'key': 'S0033583500005217_ref222', 'first-page': '223', 'article-title': 'Hydrogen isotope exchange in the study of protein conformation', 'volume': '38', 'author': 'Willumsen', 'year': '1971', 'journal-title': 'C. r. Trav. Lab. Carlsberg'}
/ C. r. Trav. Lab. Carlsberg / Hydrogen isotope exchange in the study of protein conformation by Willumsen (1971)10.1021/j150626a006
10.1021/bi00277a025
/ Biochemistry / The structure of apamin in solution: 2D NMR study by Wemmer (1983)10.1021/ar00069a004
10.1016/0022-2836(71)90158-6
10.1016/0022-2836(79)90414-5
10.1038/275247a0
10.1016/0022-2836(82)90180-2
10.1007/BF00863706
10.1016/0006-291X(80)90308-3
{'key': 'S0033583500005217_ref206', 'first-page': '261', 'article-title': 'Internal mobility in globular proteins', 'volume': '1', 'author': 'Wagner', 'year': '1982', 'journal-title': 'Comments Molec. Cell. Biophysics'}
/ Comments Molec. Cell. Biophysics / Internal mobility in globular proteins by Wagner (1982)10.1111/j.1432-1033.1971.tb01634.x
10.1021/bi00539a001
10.1007/BF02910866
10.1016/0022-2836(75)90091-1
10.1246/bcsj.51.1988
10.1016/0022-2836(79)90539-4
10.1021/bi00711a028
10.1007/978-1-4612-6137-7
10.1021/bi00638a012
10.1016/0022-2836(76)90101-7
{'key': 'S0033583500005217_ref184', 'first-page': '65', 'article-title': 'Real space refinement of neutron diffraction data from carbon monoxide sperm whale myoglobin', 'volume': '34', 'author': 'Schoenborn', 'year': '1978', 'journal-title': 'Acta. crystallogr.'}
/ Acta. crystallogr. / Real space refinement of neutron diffraction data from carbon monoxide sperm whale myoglobin by Schoenborn (1978)10.1002/bip.1978.360170515
10.1021/ja01000a006
10.1073/pnas.71.10.4154
{'key': 'S0033583500005217_ref177', 'volume-title': 'Biomolecular Stereodynamics', 'author': 'Sarma', 'year': '1981'}
/ Biomolecular Stereodynamics by Sarma (1981)10.1016/S0021-9258(18)92009-0
/ J. biol. Chem. / Studies of hydrogen exchange in proteins, i. The exchange kinetics of bovine carbonic anhydrase by Rosenberg (1968)10.1063/1.1730390
10.1016/0022-2836(81)90318-1
{'key': 'S0033583500005217_ref169', 'article-title': 'Exchange kinetics of individual amide protons in thermally unfolded BPTI', 'author': 'Roder', 'year': '1983', 'journal-title': 'Biochim. biophys. Acta'}
/ Biochim. biophys. Acta / Exchange kinetics of individual amide protons in thermally unfolded BPTI by Roder (1983){'key': 'S0033583500005217_ref180', 'first-page': '230', 'article-title': 'The stability of hydrogen bonded peptide structures in aqueous solution', 'volume': '29', 'author': 'Schellman', 'year': '1955', 'journal-title': 'C. r. Lab. Carlsberg (Ser. Chim.)'}
/ C. r. Lab. Carlsberg (Ser. Chim.) / The stability of hydrogen bonded peptide structures in aqueous solution by Schellman (1955)- Roder H. , Wagner G. & Wüthrich K. (1983 a). Kinetics and cooper-ativity of the solvent exchange of individual amide protons in BPTI. Biochim. biophys. Acta (in the Press).
10.1021/ja01028a005
10.1111/j.1432-1033.1979.tb04273.x
10.1016/S0065-3233(08)60520-3
10.1007/BF02906521
10.1146/annurev.bi.50.070181.004541
10.1016/S0065-3233(08)60460-X
10.1016/0968-0004(83)90063-4
10.1073/pnas.53.2.363
{'key': 'S0033583500005217_ref157', 'first-page': '405', 'volume-title': 'Biomolecular Stereodynamics', 'author': 'Preisler', 'year': '1981'}
/ Biomolecular Stereodynamics by Preisler (1981)10.1021/bi00846a052
10.1002/bip.360220135
{'key': 'S0033583500005217_ref153', 'first-page': '1', 'article-title': 'Crystallographic studies of movement within proteins', 'volume': '46', 'author': 'Phillips', 'year': '1981', 'journal-title': 'Biochem. Soc. Symp.'}
/ Biochem. Soc. Symp. / Crystallographic studies of movement within proteins by Phillips (1981)10.1126/science.6280281
10.1021/bi00268a038
10.3109/10409237509102551
10.1038/296776a0
10.1016/0022-2836(72)90504-9
- Roder H. (1981). Mobilitat in Proteinen unter nativen und denaturierden Bedingungen: Untersuchung von Trypsin Inhibitoren mit spectro-skopischen Methoden. Diss. ETH No. 6932.
10.1021/bi00686a019
10.1111/j.1399-3011.1981.tb01966.x
{'key': 'S0033583500005217_ref195', 'first-page': '122', 'article-title': 'Protein denaturation', 'volume': '23', 'author': 'Tanford', 'year': '1968', 'journal-title': 'Adv. Protein Chem.'}
/ Adv. Protein Chem. / Protein denaturation by Tanford (1968)10.1016/S0021-9258(18)70031-8
/ J. biol. Chem. / The preparation of subtilisin-modified ribonuclease and the separation of the peptide and protein components by Richards (1959)10.1021/bi00276a003
10.1021/bi00276a002
10.1016/S0006-3495(80)84912-5
10.1111/j.1749-6632.1975.tb41518.x
10.1016/0022-2836(80)90044-3
10.1016/0022-2836(76)90191-1
10.1016/S0006-3495(80)84984-8
10.1093/nar/9.24.7073
10.1016/B978-0-12-571803-5.50010-9
10.1016/S0021-9258(18)63519-7
/ J. biol. Chem. / Studies of hydrogen exchange in proteins. II. The reversible thermal unfolding of chymotrypsinogen A as studied by exchange kinetics by Rosenberg (1969)10.1002/bip.1981.360200116
10.1016/S0021-9258(19)45590-7
/ J. biol. Chem. / Conformational changes in human serum albumin as revealed by hydrogen deuterium exchange studies by Hvidt (1972)10.1246/bcsj.47.293
10.1021/bi00846a053
10.1107/S0567740875002415
- Connolly M. L. (1981). Molecular surfaces and interior cavities of proteins. Ph.D. Dissertation UCSF.
10.1016/S0021-9258(19)62340-9
/ J. biol. Chem. / Pressure effects on folded proteins in solution by Carter (1978)10.1073/pnas.73.8.2740
10.1111/j.1432-1033.1978.tb12425.x
10.1016/S0022-2836(83)80105-3
10.1016/S0006-3495(80)84990-3
{'key': 'S0033583500005217_ref007', 'first-page': '217', 'volume-title': 'Protein Folding', 'author': 'Baldwin', 'year': '1980'}
/ Protein Folding by Baldwin (1980)10.1016/S0021-9258(19)43744-7
/ J. biol. Chem. / Structural and free energy changes in hemoglobin by use of a difference method by Englander (1973)10.1146/annurev.bi.44.070175.002321
10.1038/280563a0
10.1016/0006-3002(54)90241-3
10.1021/bi00666a009
10.1016/0022-2836(79)90265-1
- Wüthrich K. , Wagner G. & Richarz R. (1978). A dynamic model for globular protein conformations based on high resolution NMR data. In Protein: Structure, Function and Industrial Applications, Proceedings of the I2th FEES Meeting, Dresden 1978 (ed. E. Hofmann, W. Pfeil and H. Aurich).
10.1016/0165-022X(83)90060-X
10.1016/0022-2836(82)90180-2
10.1146/annurev.bi.51.070182.002331
10.1016/S0021-9258(18)34285-6
/ J. biol. Chem. / Reexamination of rhodopsin structure by hydrogen exchange by Englander (1982){'key': 'S0033583500005217_ref161', 'first-page': '148', 'volume-title': 'Thermodynamics and Thermochemistry of Biologically Important Systems', 'author': 'Rialdi', 'year': '1975'}
/ Thermodynamics and Thermochemistry of Biologically Important Systems by Rialdi (1975)10.1021/bi00516a015
10.1073/pnas.72.9.3290
10.1016/S0021-9258(19)45441-0
/ J. biol. Chem. / Hydrogen exchange detection of discrete ligand-induced changes in hemoglobin by Englander (1972)10.1021/bi00673a023
10.1002/hlca.19630460436
{'key': 'S0033583500005217_ref035', 'first-page': '253', 'article-title': 'Solvent effects and approaches for the fine structure analysis of peptidyl amide 1H NMR spectra', 'volume': '39', 'author': 'DeMarco', 'year': '1980', 'journal-title': 'J. magn. Reson.'}
/ J. magn. Reson. / Solvent effects and approaches for the fine structure analysis of peptidyl amide 1H NMR spectra by DeMarco (1980)10.1007/BF00863707
10.1016/0005-2795(79)90020-5
10.1021/ja00402a053
10.1016/0022-2836(74)90560-9
10.1073/pnas.76.12.6341
10.1021/ja01577a001
10.1021/ja00722a002
10.1021/bi00745a028
{'key': 'S0033583500005217_ref220', 'first-page': '1944', 'article-title': 'Binding kinetics of mercury (II) to polynucleotides', 'volume': '14', 'author': 'Williams', 'year': '1975', 'journal-title': 'J. molec. Biol.'}
/ J. molec. Biol. / Binding kinetics of mercury (II) to polynucleotides by Williams (1975)10.1016/0022-2836(71)90324-X
10.1101/SQB.1972.036.01.019
10.1021/ja00521a006
10.1016/S0021-9258(19)44353-6
/ J. biol. Chem. / The solution conformation of the ferrichromes by Llinas (1973)10.1016/S0006-3495(80)84913-7
10.1021/bi00517a008
10.1021/bi00593a013
10.1016/S0021-9258(19)44354-8
/ J. biol. Chem. / The solution conformation of the ferrichromes by Llinas (1973)10.1021/bi00573a001
- Schinkle J. (1983). Protein hydration dependence of the amide hydrogen exchange of lysozyme. Ph.D. Dissertation, University of Arizona, Tucson.
{'key': 'S0033583500005217_ref117', 'volume-title': 'Symposium on Protein Structure', 'author': 'Linderstrøm-Lang', 'year': '1958'}
/ Symposium on Protein Structure by Linderstrøm-Lang (1958)10.1021/bi00564a001
{'key': 'S0033583500005217_ref138', 'first-page': '27', 'volume-title': 'Physical Chemistry', 'author': 'Moelwyn-Hughes', 'year': '1961'}
/ Physical Chemistry by Moelwyn-Hughes (1961)10.1073/pnas.77.12.7222
10.1016/0022-2836(69)90105-3
10.1021/bi00745a020
10.1016/S0022-2836(77)80112-5
10.1016/S0022-2836(83)80235-6
10.1002/anie.196400011
10.1016/0022-2836(73)90096-X
10.1016/S0022-2836(83)80185-5
10.1073/pnas.80.18.5569
10.1002/bip.1964.360020507
10.1063/1.437838
10.1016/S0065-3233(08)60129-1
10.1021/ja01510a014
10.1103/PhysRevLett.44.1160
10.1021/j100804a509
10.1021/bi00658a014
10.1002/bip.1973.360120809
10.1021/bi00530a001
10.1016/0079-6107(83)90015-9
10.1016/S0021-9258(19)46935-4
/ J. biol. Chem. / Is protein turnover thermodyn-amically controlled? by McLendon (1978)10.1002/bip.1977.360160311
10.1017/S0033583500004911
{'key': 'S0033583500005217_ref122', 'volume-title': 'Dynamic Properties of Polyion Systems', 'author': 'Lumry', 'year': '1978'}
/ Dynamic Properties of Polyion Systems by Lumry (1978)10.1002/bip.1968.360060904
10.1002/bip.1980.360190509
{'key': 'S0033583500005217_ref009', 'volume-title': 'Determination of pH: Theory and Practice', 'author': 'Bates', 'year': '1964'}
/ Determination of pH: Theory and Practice by Bates (1964)- Levitt M. (1983). Molecular dynamics of native protein. J. molec. Biol. (in the Press).
10.1016/S0021-9258(18)63395-2
/ J. biol. Chem. / The 3-dimensional structuring of ribo-nuclease S. Interpretation of an electron density map at nominal resolution of 2 Å by Wyckoff (1970)10.1073/pnas.68.6.1203
10.1073/pnas.68.6.1199
10.1111/j.1749-6632.1981.tb50567.x
10.1073/pnas.74.10.4130
10.1016/S0021-9258(18)62061-7
/ J. biol. Chem. / Urea effects on hydrogen exchange kinetics leading to a general model for hydrogen exchange from folded proteins by Woodward (1971)10.1038/228726a0
10.1073/pnas.53.2.370
10.1016/0022-2836(72)90527-X
10.1016/0003-9861(57)90478-2
10.1016/S0022-2836(83)80186-7
{'key': 'S0033583500005217_ref079', 'first-page': '299', 'article-title': 'Discussion of the pH dependence of the H-D exchange of proteins', 'volume': '34', 'author': 'Hvidt', 'year': '1964', 'journal-title': 'C. r. Trav. Lab. Carlsberg'}
/ C. r. Trav. Lab. Carlsberg / Discussion of the pH dependence of the H-D exchange of proteins by Hvidt (1964)10.1016/0003-2697(81)90474-7
10.1016/S0006-3495(80)84991-5
10.1146/annurev.bi.41.070172.004351
10.1002/bip.1969.360070309
10.1002/bbpc.19820860511
10.1038/280558a0
{'key': 'S0033583500005217_ref062', 'volume-title': 'The Theory of Rate Processes', 'author': 'Glasstone', 'year': '1941'}
/ The Theory of Rate Processes by Glasstone (1941)10.1016/S0022-2836(77)80066-1
10.1016/0022-2836(72)90227-6
{'key': 'S0033583500005217_ref108', 'first-page': '720', 'article-title': 'Origin of the absorption band at 1550 cm−1 in proteins', 'volume': '172', 'author': 'Lenormant', 'year': '1953', 'journal-title': 'Nature'}
/ Nature / Origin of the absorption band at 1550 cm−1 in proteins by Lenormant (1953)10.1021/bi00534a042
10.1021/bi00268a031
10.1016/S0065-3233(08)60459-3
10.1021/bi00864a032
10.1021/bi00537a020
10.1021/j100872a049
10.1038/261552a0
10.1038/224175a0
10.1021/bi00519a027
10.1016/0022-2836(81)90343-0
10.1021/bi00609a024
10.1002/bip.360220136
10.1007/978-94-010-2579-9_6
{'key': 'S0033583500005217_ref085', 'first-page': '1', 'article-title': 'Isotope exchange and Conformational fluctuation in polypeptides', 'volume': '6', 'author': 'Ikegami', 'year': '1974', 'journal-title': 'Adv. Biophys'}
/ Adv. Biophys / Isotope exchange and Conformational fluctuation in polypeptides by Ikegami (1974)10.1021/bi00658a015
10.1016/S0021-9258(19)70363-9
/ J. biol. Chem. / The slowest allosterically responsive hydrogens in hemoglobin: completion of the hydrogen exchange survey by Malin (1980)10.1073/pnas.79.6.1849
10.1016/0022-2836(67)90215-X
10.1021/ja00752a007
- Kallenbach N. R. & Kim P. S. (1984). Effects of bases on fluctuations at the heme pocket of cyanometmyoglobin. Proc. natn. Acad. Sci. U.S.A. (in the Press).
10.1016/0022-2836(79)90549-7
{'key': 'S0033583500005217_ref051', 'first-page': '421', 'volume-title': 'Structure and Dynamics of Nucleic Acids and Proteins', 'author': 'Englander', 'year': '1983'}
/ Structure and Dynamics of Nucleic Acids and Proteins by Englander (1983)10.1016/S0079-6603(08)60120-8
10.1016/S0022-2836(65)80285-6
10.3109/10409238109105437
10.1016/S0065-3233(08)60608-7
10.1073/pnas.79.18.5537
10.1016/S0065-3233(08)60241-7
{'key': 'S0033583500005217_ref097', 'first-page': '25', 'article-title': 'Non-covalent bonds in protein structure', 'volume': '13', 'author': 'Klotz', 'year': '1960', 'journal-title': 'Brookhaven Symp. Biol.'}
/ Brookhaven Symp. Biol. / Non-covalent bonds in protein structure by Klotz (1960)10.1021/bi00865a047
10.1038/296713a0
10.1021/bi00745a021
10.1002/bip.360220703
{'key': 'S0033583500005217_ref124', 'first-page': '55', 'article-title': 'The mobile defect hypothesis of protein function', 'volume': '246', 'author': 'Lumry', 'year': '1975', 'journal-title': "Col. Int. C.N.R.S. L'Eau Syst. Biol."}
/ Col. Int. C.N.R.S. L'Eau Syst. Biol. / The mobile defect hypothesis of protein function by Lumry (1975)10.1021/bi00585a002
10.1002/bip.1981.360200810
10.1021/bi00876a037
10.1007/BF00421225
10.1038/294379a0
10.1146/annurev.bb.11.060182.001343
10.3109/10409237509102555
10.1016/S0021-9258(19)68727-2
/ J. biol. Chem. / Carbon-13 spin lattice relaxation, linewidth and nuclear overhauser enhancement measurements of nucleosome length DNA by Levy (1981)10.1002/bip.1979.360181008
10.1021/bi00262a026
{'key': 'S0033583500005217_ref116', 'first-page': '1', 'article-title': 'Deuterium exchange between peptides and water', 'volume': '2', 'author': 'Linderstrøm-Lang', 'year': '1955', 'journal-title': 'Symposium on Peptide Chemistry. Chem. Soc. Spec. Publ.'}
/ Symposium on Peptide Chemistry. Chem. Soc. Spec. Publ. / Deuterium exchange between peptides and water by Linderstrøm-Lang (1955){'key': 'S0033583500005217_ref118', 'volume-title': 'The Enzymes', 'volume': '1', 'author': 'Linderstrøm-Lang', 'year': '1959'}
/ The Enzymes by Linderstrøm-Lang (1959)10.1016/0079-6107(79)90030-0
10.1038/267585a0
10.1016/0022-2836(70)90195-6
10.1021/bi00709a001
10.1021/bi00719a007
10.1016/0003-2697(79)90693-6
10.1021/bi00677a029
10.1016/0022-2836(79)90550-3
10.1016/0022-2836(79)90443-1
{'key': 'S0033583500005217_ref134', 'volume-title': 'Neutrons in Biology: Neutron Scattering Analysis for Biological structures', 'author': 'Mason', 'year': '1983'}
/ Neutrons in Biology: Neutron Scattering Analysis for Biological structures by Mason (1983){'key': 'S0033583500005217_ref200', 'first-page': '101', 'article-title': 'Overall and localized fluctuation in the structure of a protein molecule', 'volume': '12', 'author': 'Tsuboi', 'year': '1979', 'journal-title': 'Adv. Biophys.'}
/ Adv. Biophys. / Overall and localized fluctuation in the structure of a protein molecule by Tsuboi (1979)- Matthew J. B. & Richards F. M. (1983). The pH dependence of hydrogen exchange in proteins. J. biol. Chem. (in the Press).
10.1063/1.443182
10.1016/0022-2836(73)90300-8
10.1016/0022-2836(79)90400-5
10.1021/bi00752a003
10.1021/ja00798a041
10.1021/ja00469a046
10.1073/pnas.79.5.1418
10.1016/0022-2836(72)90544-X
Dates
Type | When |
---|---|
Created | 16 years, 5 months ago (March 17, 2009, noon) |
Deposited | 3 years, 10 months ago (Oct. 3, 2021, 5:20 a.m.) |
Indexed | 3 weeks, 4 days ago (Aug. 5, 2025, 8:23 a.m.) |
Issued | 41 years, 9 months ago (Nov. 1, 1983) |
Published | 41 years, 9 months ago (Nov. 1, 1983) |
Published Online | 16 years, 5 months ago (March 17, 2009) |
Published Print | 41 years, 9 months ago (Nov. 1, 1983) |
@article{Englander_1983, title={Hydrogen exchange and structural dynamics of proteins and nucleic acids}, volume={16}, ISSN={1469-8994}, url={http://dx.doi.org/10.1017/s0033583500005217}, DOI={10.1017/s0033583500005217}, number={4}, journal={Quarterly Reviews of Biophysics}, publisher={Cambridge University Press (CUP)}, author={Englander, S. Walter and Kallenbach, Neville R.}, year={1983}, month=nov, pages={521–655} }