DOI: 10.1016/j.ymeth.2016.02.018. High resolution single particle refinement in EMAN2.1

High resolution single particle refinement in EMAN2.1

10.1016/j.ymeth.2016.02.018

Crossref journal-article

Elsevier BV

Methods (78)

Bibliography

Bell, J. M., Chen, M., Baldwin, P. R., & Ludtke, S. J. (2016). High resolution single particle refinement in EMAN2.1. Methods, 100, 25â34.

Authors 4

James M. Bell (first)
Muyuan Chen (additional)
Philip R. Baldwin (additional)
Steven J. Ludtke (additional)

References 33 Referenced 161

10.1006/jsbi.1996.0030 / J. Struct. Biol. by Frank (1996)
10.1016/S0304-3991(81)80236-7 / Ultramicroscopy by Frank (1981)
10.1006/jsbi.1996.0004 / J. Struct. Biol. by van Heel (1996)
10.1016/j.jsb.2006.05.009 / J. Struct. Biol. by Tang (2007)
10.1016/j.jsb.2006.07.003 / J. Struct. Biol. by Hohn (2007)
10.1016/j.jsb.2012.09.006 / J. Struct. Biol. by Scheres (2012)
10.1038/nprot.2008.62 / Nat. Protoc. by Scheres (2008)
10.1016/j.jsb.2006.05.004 / J. Struct. Biol. by Grigorieff (2007)
10.1016/0304-3991(82)90187-5 / Ultramicroscopy by Dubochet (1982)
{'key': '10.1016/j.ymeth.2016.02.018_b0050', 'first-page': '221', 'volume': '261', 'author': 'Erickson', 'year': '1970', 'journal-title': 'Philos. Trans. R. Soc. Lond. B'} / Philos. Trans. R. Soc. Lond. B by Erickson (1970)
10.1016/j.jsb.2007.10.007 / J. Struct. Biol. by Jin (2008)
10.1016/j.str.2012.08.026 / Structure by Campbell (2012)
10.1016/j.jsb.2015.08.007 / J. Struct. Biol. by Rubinstein (2015)
10.7554/eLife.00461 / Elife by Bai (2013)
10.1038/nmeth.2472 / Nat. Methods by Li (2013)
10.1038/ncomms5808 / Nat. Commun. by Wang (2014)
10.1016/S1047-8477(03)00069-8 / J. Struct. Biol. by Mindell (2003)
10.1016/j.jsb.2003.09.033 / J. Struct. Biol. by Zhu (2004)
10.1016/j.jsb.2006.04.006 / J. Struct. Biol. by Woolford (2007)
10.1006/jsbi.2000.4279 / J. Struct. Biol. by Kivioja (2000)
10.1006/jmbi.2001.5133 / J. Mol. Biol. by Ludtke (2001)
10.1038/emboj.2011.366 / EMBO J. by Cong (2012)
10.1016/j.jsb.2006.06.002 / J. Struct. Biol. by Baldwin (2007)
10.1016/0304-3991(87)90078-7 / Ultramicroscopy by Van Heel (1987)
10.1016/j.str.2013.07.002 / Structure by Elmlund (2013)
10.1016/j.jsb.2015.04.016 / J. Struct. Biol. by Galaz-Montoya (2015)
10.1073/pnas.1402809111 / Proc. Natl. Acad. Sci. U.S.A. by Bartesaghi (2014)
10.1016/j.sbi.2015.02.016 / Curr. Opin. Struct. Biol. by Schröder (2015)
10.1016/j.jsb.2011.01.015 / J. Struct. Biol. by Baker (2011)
10.1016/j.str.2012.01.008 / Structure by Baker (2012)
10.1016/j.str.2011.12.014 / Structure by Henderson (2012)
10.1107/S0907444909042073 / Acta Crystallogr. D Biol. Crystallogr. by Chen (2010)
10.1016/j.str.2013.04.016 / Structure by Murray (2013)

Dates

Type	When
Created	9 years, 5 months ago (Feb. 28, 2016, 7:30 a.m.)
Deposited	5 years, 9 months ago (Oct. 29, 2019, 9:09 p.m.)
Indexed	3 weeks, 2 days ago (July 30, 2025, 10:22 a.m.)
Issued	9 years, 3 months ago (May 1, 2016)
Published	9 years, 3 months ago (May 1, 2016)
Published Print	9 years, 3 months ago (May 1, 2016)

Funders 1

NIH 10.13039/100000002 National Institutes of Health
Region: Americas
gov (National government)
Labels3
1. Institutos Nacionales de la Salud
2. US National Institutes of Health
3. NIH
Awards2
1. R01GM080139
2. P41GM103832

BibTeX

@article{Bell_2016, title={High resolution single particle refinement in EMAN2.1}, volume={100}, ISSN={1046-2023}, url={http://dx.doi.org/10.1016/j.ymeth.2016.02.018}, DOI={10.1016/j.ymeth.2016.02.018}, journal={Methods}, publisher={Elsevier BV}, author={Bell, James M. and Chen, Muyuan and Baldwin, Philip R. and Ludtke, Steven J.}, year={2016}, month=may, pages={25–34} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        7,
        30
      ]
    ],
    "date-time": "2025-07-30T14:22:39Z",
    "timestamp": 1753885359949,
    "version": "3.37.3"
  },
  "reference-count": 33,
  "publisher": "Elsevier BV",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2016,
            5,
            1
          ]
        ],
        "date-time": "2016-05-01T00:00:00Z",
        "timestamp": 1462060800000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "funder": [
    {
      "DOI": "10.13039/100000002",
      "name": "NIH",
      "doi-asserted-by": "publisher",
      "award": [
        "R01GM080139",
        "P41GM103832"
      ],
      "id": [
        {
          "id": "10.13039/100000002",
          "id-type": "DOI",
          "asserted-by": "publisher"
        }
      ]
    }
  ],
  "content-domain": {
    "domain": [
      "elsevier.com",
      "sciencedirect.com"
    ],
    "crossmark-restriction": true
  },
  "published-print": {
    "date-parts": [
      [
        2016,
        5
      ]
    ]
  },
  "DOI": "10.1016/j.ymeth.2016.02.018",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2016,
        2,
        28
      ]
    ],
    "date-time": "2016-02-28T12:30:35Z",
    "timestamp": 1456662635000
  },
  "page": "25-34",
  "update-policy": "https://doi.org/10.1016/elsevier_cm_policy",
  "source": "Crossref",
  "is-referenced-by-count": 161,
  "special_numbering": "C",
  "title": "High resolution single particle refinement in EMAN2.1",
  "prefix": "10.1016",
  "volume": "100",
  "author": [
    {
      "given": "James M.",
      "family": "Bell",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Muyuan",
      "family": "Chen",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Philip R.",
      "family": "Baldwin",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Steven J.",
      "family": "Ludtke",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0005",
      "doi-asserted-by": "crossref",
      "first-page": "190",
      "DOI": "10.1006/jsbi.1996.0030",
      "volume": "116",
      "author": "Frank",
      "year": "1996",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0010",
      "doi-asserted-by": "crossref",
      "first-page": "343",
      "DOI": "10.1016/S0304-3991(81)80236-7",
      "volume": "6",
      "author": "Frank",
      "year": "1981",
      "journal-title": "Ultramicroscopy"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0015",
      "doi-asserted-by": "crossref",
      "first-page": "17",
      "DOI": "10.1006/jsbi.1996.0004",
      "volume": "116",
      "author": "van Heel",
      "year": "1996",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0020",
      "doi-asserted-by": "crossref",
      "first-page": "38",
      "DOI": "10.1016/j.jsb.2006.05.009",
      "volume": "157",
      "author": "Tang",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0025",
      "doi-asserted-by": "crossref",
      "first-page": "47",
      "DOI": "10.1016/j.jsb.2006.07.003",
      "volume": "157",
      "author": "Hohn",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0030",
      "doi-asserted-by": "crossref",
      "first-page": "519",
      "DOI": "10.1016/j.jsb.2012.09.006",
      "volume": "180",
      "author": "Scheres",
      "year": "2012",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0035",
      "doi-asserted-by": "crossref",
      "first-page": "977",
      "DOI": "10.1038/nprot.2008.62",
      "volume": "3",
      "author": "Scheres",
      "year": "2008",
      "journal-title": "Nat. Protoc."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0040",
      "doi-asserted-by": "crossref",
      "first-page": "117",
      "DOI": "10.1016/j.jsb.2006.05.004",
      "volume": "157",
      "author": "Grigorieff",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0045",
      "doi-asserted-by": "crossref",
      "first-page": "55",
      "DOI": "10.1016/0304-3991(82)90187-5",
      "volume": "10",
      "author": "Dubochet",
      "year": "1982",
      "journal-title": "Ultramicroscopy"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0050",
      "first-page": "221",
      "volume": "261",
      "author": "Erickson",
      "year": "1970",
      "journal-title": "Philos. Trans. R. Soc. Lond. B"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0055",
      "doi-asserted-by": "crossref",
      "first-page": "352",
      "DOI": "10.1016/j.jsb.2007.10.007",
      "volume": "161",
      "author": "Jin",
      "year": "2008",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0060",
      "doi-asserted-by": "crossref",
      "first-page": "1823",
      "DOI": "10.1016/j.str.2012.08.026",
      "volume": "20",
      "author": "Campbell",
      "year": "2012",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0065",
      "doi-asserted-by": "crossref",
      "first-page": "188",
      "DOI": "10.1016/j.jsb.2015.08.007",
      "volume": "192",
      "author": "Rubinstein",
      "year": "2015",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0070",
      "doi-asserted-by": "crossref",
      "first-page": "e00461",
      "DOI": "10.7554/eLife.00461",
      "volume": "2",
      "author": "Bai",
      "year": "2013",
      "journal-title": "Elife"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0075",
      "doi-asserted-by": "crossref",
      "first-page": "584",
      "DOI": "10.1038/nmeth.2472",
      "volume": "10",
      "author": "Li",
      "year": "2013",
      "journal-title": "Nat. Methods"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0080",
      "doi-asserted-by": "crossref",
      "first-page": "4808",
      "DOI": "10.1038/ncomms5808",
      "volume": "5",
      "author": "Wang",
      "year": "2014",
      "journal-title": "Nat. Commun."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0085",
      "doi-asserted-by": "crossref",
      "first-page": "334",
      "DOI": "10.1016/S1047-8477(03)00069-8",
      "volume": "142",
      "author": "Mindell",
      "year": "2003",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0090",
      "doi-asserted-by": "crossref",
      "first-page": "3",
      "DOI": "10.1016/j.jsb.2003.09.033",
      "volume": "145",
      "author": "Zhu",
      "year": "2004",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0095",
      "doi-asserted-by": "crossref",
      "first-page": "174",
      "DOI": "10.1016/j.jsb.2006.04.006",
      "volume": "157",
      "author": "Woolford",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0100",
      "doi-asserted-by": "crossref",
      "first-page": "126",
      "DOI": "10.1006/jsbi.2000.4279",
      "volume": "131",
      "author": "Kivioja",
      "year": "2000",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0105",
      "doi-asserted-by": "crossref",
      "first-page": "253",
      "DOI": "10.1006/jmbi.2001.5133",
      "volume": "314",
      "author": "Ludtke",
      "year": "2001",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0110",
      "doi-asserted-by": "crossref",
      "first-page": "720",
      "DOI": "10.1038/emboj.2011.366",
      "volume": "31",
      "author": "Cong",
      "year": "2012",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0115",
      "doi-asserted-by": "crossref",
      "first-page": "250",
      "DOI": "10.1016/j.jsb.2006.06.002",
      "volume": "157",
      "author": "Baldwin",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0120",
      "doi-asserted-by": "crossref",
      "first-page": "111",
      "DOI": "10.1016/0304-3991(87)90078-7",
      "volume": "21",
      "author": "Van Heel",
      "year": "1987",
      "journal-title": "Ultramicroscopy"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0125",
      "doi-asserted-by": "crossref",
      "first-page": "1299",
      "DOI": "10.1016/j.str.2013.07.002",
      "volume": "21",
      "author": "Elmlund",
      "year": "2013",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0130",
      "doi-asserted-by": "crossref",
      "first-page": "279",
      "DOI": "10.1016/j.jsb.2015.04.016",
      "volume": "190",
      "author": "Galaz-Montoya",
      "year": "2015",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0135",
      "doi-asserted-by": "crossref",
      "first-page": "11709",
      "DOI": "10.1073/pnas.1402809111",
      "volume": "111",
      "author": "Bartesaghi",
      "year": "2014",
      "journal-title": "Proc. Natl. Acad. Sci. U.S.A."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0140",
      "doi-asserted-by": "crossref",
      "first-page": "20",
      "DOI": "10.1016/j.sbi.2015.02.016",
      "volume": "31",
      "author": "Schr\u00f6der",
      "year": "2015",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0145",
      "doi-asserted-by": "crossref",
      "first-page": "360",
      "DOI": "10.1016/j.jsb.2011.01.015",
      "volume": "174",
      "author": "Baker",
      "year": "2011",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0150",
      "doi-asserted-by": "crossref",
      "first-page": "450",
      "DOI": "10.1016/j.str.2012.01.008",
      "volume": "20",
      "author": "Baker",
      "year": "2012",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0155",
      "doi-asserted-by": "crossref",
      "first-page": "205",
      "DOI": "10.1016/j.str.2011.12.014",
      "volume": "20",
      "author": "Henderson",
      "year": "2012",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0160",
      "doi-asserted-by": "crossref",
      "first-page": "12",
      "DOI": "10.1107/S0907444909042073",
      "volume": "66",
      "author": "Chen",
      "year": "2010",
      "journal-title": "Acta Crystallogr. D Biol. Crystallogr."
    },
    {
      "key": "10.1016/j.ymeth.2016.02.018_b0165",
      "doi-asserted-by": "crossref",
      "first-page": "900",
      "DOI": "10.1016/j.str.2013.04.016",
      "volume": "21",
      "author": "Murray",
      "year": "2013",
      "journal-title": "Structure"
    }
  ],
  "container-title": "Methods",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1046202316300342?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1046202316300342?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2019,
        10,
        30
      ]
    ],
    "date-time": "2019-10-30T01:09:11Z",
    "timestamp": 1572397751000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S1046202316300342"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2016,
        5
      ]
    ]
  },
  "references-count": 33,
  "alternative-id": [
    "S1046202316300342"
  ],
  "URL": "http://dx.doi.org/10.1016/j.ymeth.2016.02.018",
  "relation": {},
  "ISSN": [
    "1046-2023"
  ],
  "subject": [],
  "container-title-short": "Methods",
  "published": {
    "date-parts": [
      [
        2016,
        5
      ]
    ]
  },
  "assertion": [
    {
      "value": "Elsevier",
      "name": "publisher",
      "label": "This article is maintained by"
    },
    {
      "value": "High resolution single particle refinement in EMAN2.1",
      "name": "articletitle",
      "label": "Article Title"
    },
    {
      "value": "Methods",
      "name": "journaltitle",
      "label": "Journal Title"
    },
    {
      "value": "https://doi.org/10.1016/j.ymeth.2016.02.018",
      "name": "articlelink",
      "label": "CrossRef DOI link to publisher maintained version"
    },
    {
      "value": "article",
      "name": "content_type",
      "label": "Content Type"
    },
    {
      "value": "\u00a9 2016 Elsevier Inc. All rights reserved.",
      "name": "copyright",
      "label": "Copyright"
    }
  ]
}