DOI: 10.1016/j.ultramic.2011.03.001. A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM

A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM

10.1016/j.ultramic.2011.03.001

Crossref journal-article

Elsevier BV

Ultramicroscopy (78)

Bibliography

Voortman, L. M., Stallinga, S., Schoenmakers, R. H. M., van Vliet, L. J., & Rieger, B. (2011). A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM. Ultramicroscopy, 111(8), 1029â1036.

Authors 5

Lenard M. Voortman (first)
Sjoerd Stallinga (additional)
Remco H.M. Schoenmakers (additional)
Lucas J. van Vliet (additional)
Bernd Rieger (additional)

References 30 Referenced 37

10.1016/S0959-440X(02)00378-0 / Current Opinion in Structural Biology / Electron tomography: towards visualizing the molecular organization of the cytoplasm by Baumeister (2002)
10.1006/jsbi.1997.3845 / Journal of Structural Biology / Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome by Zhu (1997)
10.1038/nature05015 / Nature / In situ structure of the complete Treponema primitia flagellar motor by Murphy (2006)
10.1038/nature07159 / Nature / Molecular architecture of native HIV-1 gp120 trimers by Liu (2008)
10.1017/S0033583500003644 / Quarterly Reviews of Biophysics / Single-particle electron cryo-microscopy: towards atomic resolution by van Heel (2000)
10.1016/j.ultramic.2006.07.010 / Ultramicroscopy / The contrast-imaging function for tilted specimens by Philippsen (2007)
10.1016/j.ultramic.2006.02.004 / Ultramicroscopy / CTF determination and correction in electron cryotomography by Fernández (2006)
10.1016/S1047-8477(03)00120-5 / Journal of Structural Biology / Focus gradient correction applied to tilt series image data used in electron tomography by Winkler (2003)
10.1016/S1047-8477(03)00069-8 / Journal of Structural Biology / Accurate determination of local defocus and specimen tilt in electron microscopy by Mindell (2003)
10.1016/j.jsb.2009.08.016 / Journal of Structural Biology / CTF determination and correction for low dose tomographic tilt series by Xiong (2009)
10.1016/j.jsb.2009.08.002 / Journal of Structural Biology / Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging by Zanetti (2009)
Y. Wan, W. Chiu, Z.H. Zhou, Full contrast transfer function correction in 3D cryo-EM reconstruction, in: IEEE Proceedings of ICCCAS, vol. 2, 2004, pp. 960–964. (10.1109/ICCCAS.2004.1346339)
10.1016/S0304-3991(00)00005-X / Ultramicroscopy / Defocus-gradient corrected back-projection by Jensen (2000)
10.1016/j.ultramic.2010.04.002 / Ultramicroscopy / Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy by Kazantsev (2010)
J.N. Dubowy, G.T. Herman, An approach to the correction of distance-dependent defocus in electron microscopic reconstruction, in: IEEE International Conference on Image Processing, ICIP, vol. 3, 2005, pp. 748–751. (10.1109/ICIP.2005.1530500)
I.G. Kazantsev, G.T. Herman, L. Cernetic, Backprojection-based reconstruction and correction for distance-dependent defocus in cryoelectron microscopy, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI, 2008, pp. 133–136. (10.1109/ISBI.2008.4540950)
{'key': '10.1016/j.ultramic.2011.03.001_bib17', 'series-title': 'Transmission Electron Microscopy', 'author': 'Reimer', 'year': '1984'} / Transmission Electron Microscopy by Reimer (1984)
{'key': '10.1016/j.ultramic.2011.03.001_bib18', 'series-title': 'Principles of Computerized Tomographic Imaging', 'author': 'Kak', 'year': '1988'} / Principles of Computerized Tomographic Imaging by Kak (1988)
10.1109/JPROC.2004.840301 / Proceedings of the IEEE / The design and implementation of FFTW 3 by Frigo (2005)
10.1137/0914081 / SIAM Journal on Scientific Computing / Fast fourier transforms for nonequispaced data by Dutt (1993)
10.1006/acha.1995.1007 / Applied and Computational Harmonic Analysis / Fast Fourier transforms for nonequispaced data II by Dutt (1995)
10.1137/S003614450343200X / SIAM Review / Accelerating the nonuniform fast Fourier transform by Greengard (2004)
10.1109/TMI.2004.824233 / IEEE Transactions on Medical Imaging / Iterative tomographic image reconstruction using Fourier-based forward and back-projectors by Matej (2004)
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10.1016/0304-3991(87)90010-6 / Ultramicroscopy / Similarity measures between images by van Heel (1987)
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10.1016/S0304-3991(99)00120-5 / Ultramicroscopy / Correction of high-resolution data for curvature of the Ewald sphere by DeRosier (2000)

Dates

Type	When
Created	14 years, 5 months ago (March 9, 2011, 10:26 a.m.)
Deposited	1 year, 4 months ago (April 4, 2024, 10:26 p.m.)
Indexed	2 weeks, 3 days ago (Aug. 3, 2025, 6:59 p.m.)
Issued	14 years, 1 month ago (July 1, 2011)
Published	14 years, 1 month ago (July 1, 2011)
Published Print	14 years, 1 month ago (July 1, 2011)

Funders 0

None

BibTeX

@article{Voortman_2011, title={A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM}, volume={111}, ISSN={0304-3991}, url={http://dx.doi.org/10.1016/j.ultramic.2011.03.001}, DOI={10.1016/j.ultramic.2011.03.001}, number={8}, journal={Ultramicroscopy}, publisher={Elsevier BV}, author={Voortman, Lenard M. and Stallinga, Sjoerd and Schoenmakers, Remco H.M. and van Vliet, Lucas J. and Rieger, Bernd}, year={2011}, month=jul, pages={1029–1036} }

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