DOI: 10.1016/j.tibs.2007.10.002. Electron crystallography of biomolecules: mysterious membranes and missing cones

Electron crystallography of biomolecules: mysterious membranes and missing cones

10.1016/j.tibs.2007.10.002

Crossref journal-article

Elsevier BV

Trends in Biochemical Sciences (78)

Bibliography

Ford, R. C., & Holzenburg, A. (2008). Electron crystallography of biomolecules: mysterious membranes and missing cones. Trends in Biochemical Sciences, 33(1), 38â43.

Authors 2

Robert C. Ford (first)
Andreas Holzenburg (additional)

References 24 Referenced 13

10.1016/j.jsb.2004.01.012 / J. Struct. Biol. / Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique by Gyobu (2004)
10.1038/nature04321 / Nature / Lipid-protein interactions in double-layered two-dimensional AQP0 crystals by Gonen (2005)
10.1152/physiol.00017.2006 / Physiology (Bethesda) / The emerging structure of vacuolar ATPases by Drory (2006)
10.1016/j.str.2006.05.014 / Structure / An expanded and flexible form of the vacuolar ATPase membrane sector by Clare (2006)
10.1016/j.jmb.2004.02.026 / J. Mol. Biol. / Projection structure and oligomeric state of the osmoregulated sodium/glycine betaine symporter BetP of Corynebacterium glutamicum by Ziegler (2004)
10.1093/emboj/cdg611 / EMBO J. / Three-dimensional structure of the bacterial multidrug transporter EmrE shows it is an asymmetric homodimer by Ubarretxena-Belandia (2003)
10.1016/j.jsb.2003.09.002 / J. Struct. Biol. / Projection structure of the bacterial oxalate transporter OxlT at 3.4A resolution by Heymann (2003)
10.1016/j.jsb.2005.07.003 / J. Struct. Biol. / Three-dimensional structure of the sugar symporter melibiose permease from cryo-electron microscopy by Purhonen (2005)
10.1016/j.jsb.2004.10.008 / J. Struct. Biol. / Two-dimensional crystallization of the ryanodine receptor Ca2+ release channel on lipid membranes by Yin (2005)
10.1074/jbc.C300304200 / J. Biol. Chem. / Projection structure of the atractyloside-inhibited mitochondrial ADP/ATP carrier of Saccharomyces cerevisiae by Kunji (2003)
10.1016/j.bbamem.2004.02.008 / Biochim. Biophys. Acta / Mechanism of formation of multilayered 2D crystals of the enzyme IIC-mannitol transporter by Stuart (2004)
10.1074/jbc.M410296200 / J. Biol. Chem. / Three-dimensional structure of P-glycoprotein: the transmembrane regions adopt an asymmetric configuration in the nucleotide-bound state by Rosenberg (2005)
10.1016/j.jsb.2006.08.002 / J. Struct. Biol. / Two-dimensional crystallization of human vitamin K-dependent gamma-glutamyl carboxylase by Schmidt-Krey (2007)
{'key': '10.1016/j.tibs.2007.10.002_bib14', 'series-title': 'Structure Analysis by Electron Diffraction', 'author': 'Vainshtein', 'year': '1964'} / Structure Analysis by Electron Diffraction by Vainshtein (1964)
{'key': '10.1016/j.tibs.2007.10.002_bib15', 'series-title': 'Computer Processing of Electron Microscope Images', 'first-page': '127', 'article-title': 'Three-dimensional structure determination by electron microscopy (nonperiodic specimens)', 'author': 'Hoppe', 'year': '1980'} / Computer Processing of Electron Microscope Images / Three-dimensional structure determination by electron microscopy (nonperiodic specimens) by Hoppe (1980)
10.1016/0079-6107(83)90017-2 / Prog. Biophys. Mol. Biol. / Three-dimensional structure determination by electron microscopy of two-dimensional crystals by Amos (1982)
10.1016/0304-3991(89)90021-1 / Ultramicroscopy / Three-dimensional reconstructions from incomplete data: interpretability of density maps at ‘atomic’ resolution by Glaeser (1989)
{'key': '10.1016/j.tibs.2007.10.002_bib18', 'first-page': '277', 'article-title': 'Estimation of missing cone data in three-dimensional electron microscopy', 'volume': '2', 'author': 'Barth', 'year': '1988', 'journal-title': 'Scanning Microsc. Suppl.'} / Scanning Microsc. Suppl. / Estimation of missing cone data in three-dimensional electron microscopy by Barth (1988)
10.1002/(SICI)1097-0029(19990715)46:2<98::AID-JEMT3>3.0.CO;2-G / Microsc. Res. Tech. / Filling the missing cone in protein electron crystallography by Dorset (1999)
10.1006/jsbi.1993.1042 / J. Struct. Biol. / Electron crystallographic analysis of a polysaccharide structure–direct phase determination and model refinement for mannan I by Dorset (1993)
10.1038/38323 / Nature / Surface of bacteriorhodopsin revealed by high-resolution electron crystallography by Kimura (1997)
10.1107/S0108767305024670 / Acta Crystallogr. / Electron crystallography of zeolites – the MWW family as a test of direct 3D structure determination by Dorset (2005)
10.1016/0304-3991(92)90015-C / Ultramicroscopy / Automatic focus correction for spot-scan imaging of tilted specimens by Downing (1992)
10.1126/science.1071142 / Science / The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism by Locher (2002)

Dates

Type	When
Created	17 years, 8 months ago (Dec. 6, 2007, 9:36 a.m.)
Deposited	6 years, 7 months ago (Jan. 1, 2019, 8:57 p.m.)
Indexed	1 year, 2 months ago (June 2, 2024, 1:53 a.m.)
Issued	17 years, 8 months ago (Jan. 1, 2008)
Published	17 years, 8 months ago (Jan. 1, 2008)
Published Print	17 years, 8 months ago (Jan. 1, 2008)

Funders 0

None

JSON

{
  "indexed": {
    "date-parts": [
      [
        2024,
        6,
        2
      ]
    ],
    "date-time": "2024-06-02T05:53:37Z",
    "timestamp": 1717307617849
  },
  "reference-count": 24,
  "publisher": "Elsevier BV",
  "issue": "1",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2008,
            1,
            1
          ]
        ],
        "date-time": "2008-01-01T00:00:00Z",
        "timestamp": 1199145600000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2008,
        1
      ]
    ]
  },
  "DOI": "10.1016/j.tibs.2007.10.002",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2007,
        12,
        6
      ]
    ],
    "date-time": "2007-12-06T14:36:42Z",
    "timestamp": 1196951802000
  },
  "page": "38-43",
  "source": "Crossref",
  "is-referenced-by-count": 13,
  "title": "Electron crystallography of biomolecules: mysterious membranes and missing cones",
  "prefix": "10.1016",
  "volume": "33",
  "author": [
    {
      "given": "Robert C.",
      "family": "Ford",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Andreas",
      "family": "Holzenburg",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.tibs.2007.10.002_bib1",
      "doi-asserted-by": "crossref",
      "first-page": "325",
      "DOI": "10.1016/j.jsb.2004.01.012",
      "article-title": "Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique",
      "volume": "146",
      "author": "Gyobu",
      "year": "2004",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib2",
      "doi-asserted-by": "crossref",
      "first-page": "633",
      "DOI": "10.1038/nature04321",
      "article-title": "Lipid-protein interactions in double-layered two-dimensional AQP0 crystals",
      "volume": "438",
      "author": "Gonen",
      "year": "2005",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib3",
      "doi-asserted-by": "crossref",
      "first-page": "317",
      "DOI": "10.1152/physiol.00017.2006",
      "article-title": "The emerging structure of vacuolar ATPases",
      "volume": "21",
      "author": "Drory",
      "year": "2006",
      "journal-title": "Physiology (Bethesda)"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib4",
      "doi-asserted-by": "crossref",
      "first-page": "1149",
      "DOI": "10.1016/j.str.2006.05.014",
      "article-title": "An expanded and flexible form of the vacuolar ATPase membrane sector",
      "volume": "14",
      "author": "Clare",
      "year": "2006",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib5",
      "doi-asserted-by": "crossref",
      "first-page": "1137",
      "DOI": "10.1016/j.jmb.2004.02.026",
      "article-title": "Projection structure and oligomeric state of the osmoregulated sodium/glycine betaine symporter BetP of Corynebacterium glutamicum",
      "volume": "337",
      "author": "Ziegler",
      "year": "2004",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib6",
      "doi-asserted-by": "crossref",
      "first-page": "6175",
      "DOI": "10.1093/emboj/cdg611",
      "article-title": "Three-dimensional structure of the bacterial multidrug transporter EmrE shows it is an asymmetric homodimer",
      "volume": "22",
      "author": "Ubarretxena-Belandia",
      "year": "2003",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib7",
      "doi-asserted-by": "crossref",
      "first-page": "320",
      "DOI": "10.1016/j.jsb.2003.09.002",
      "article-title": "Projection structure of the bacterial oxalate transporter OxlT at 3.4A resolution",
      "volume": "144",
      "author": "Heymann",
      "year": "2003",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib8",
      "doi-asserted-by": "crossref",
      "first-page": "76",
      "DOI": "10.1016/j.jsb.2005.07.003",
      "article-title": "Three-dimensional structure of the sugar symporter melibiose permease from cryo-electron microscopy",
      "volume": "152",
      "author": "Purhonen",
      "year": "2005",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib9",
      "doi-asserted-by": "crossref",
      "first-page": "219",
      "DOI": "10.1016/j.jsb.2004.10.008",
      "article-title": "Two-dimensional crystallization of the ryanodine receptor Ca2+ release channel on lipid membranes",
      "volume": "149",
      "author": "Yin",
      "year": "2005",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib10",
      "doi-asserted-by": "crossref",
      "first-page": "36985",
      "DOI": "10.1074/jbc.C300304200",
      "article-title": "Projection structure of the atractyloside-inhibited mitochondrial ADP/ATP carrier of Saccharomyces cerevisiae",
      "volume": "278",
      "author": "Kunji",
      "year": "2003",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib11",
      "doi-asserted-by": "crossref",
      "first-page": "108",
      "DOI": "10.1016/j.bbamem.2004.02.008",
      "article-title": "Mechanism of formation of multilayered 2D crystals of the enzyme IIC-mannitol transporter",
      "volume": "1663",
      "author": "Stuart",
      "year": "2004",
      "journal-title": "Biochim. Biophys. Acta"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "2857",
      "DOI": "10.1074/jbc.M410296200",
      "article-title": "Three-dimensional structure of P-glycoprotein: the transmembrane regions adopt an asymmetric configuration in the nucleotide-bound state",
      "volume": "280",
      "author": "Rosenberg",
      "year": "2005",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib13",
      "doi-asserted-by": "crossref",
      "first-page": "437",
      "DOI": "10.1016/j.jsb.2006.08.002",
      "article-title": "Two-dimensional crystallization of human vitamin K-dependent gamma-glutamyl carboxylase",
      "volume": "157",
      "author": "Schmidt-Krey",
      "year": "2007",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib14",
      "series-title": "Structure Analysis by Electron Diffraction",
      "author": "Vainshtein",
      "year": "1964"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib15",
      "series-title": "Computer Processing of Electron Microscope Images",
      "first-page": "127",
      "article-title": "Three-dimensional structure determination by electron microscopy (nonperiodic specimens)",
      "author": "Hoppe",
      "year": "1980"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib16",
      "doi-asserted-by": "crossref",
      "first-page": "183",
      "DOI": "10.1016/0079-6107(83)90017-2",
      "article-title": "Three-dimensional structure determination by electron microscopy of two-dimensional crystals",
      "volume": "39",
      "author": "Amos",
      "year": "1982",
      "journal-title": "Prog. Biophys. Mol. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib17",
      "doi-asserted-by": "crossref",
      "first-page": "307",
      "DOI": "10.1016/0304-3991(89)90021-1",
      "article-title": "Three-dimensional reconstructions from incomplete data: interpretability of density maps at \u2018atomic\u2019 resolution",
      "volume": "27",
      "author": "Glaeser",
      "year": "1989",
      "journal-title": "Ultramicroscopy"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib18",
      "first-page": "277",
      "article-title": "Estimation of missing cone data in three-dimensional electron microscopy",
      "volume": "2",
      "author": "Barth",
      "year": "1988",
      "journal-title": "Scanning Microsc. Suppl."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "98",
      "DOI": "10.1002/(SICI)1097-0029(19990715)46:2<98::AID-JEMT3>3.0.CO;2-G",
      "article-title": "Filling the missing cone in protein electron crystallography",
      "volume": "46",
      "author": "Dorset",
      "year": "1999",
      "journal-title": "Microsc. Res. Tech."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib20",
      "doi-asserted-by": "crossref",
      "first-page": "118",
      "DOI": "10.1006/jsbi.1993.1042",
      "article-title": "Electron crystallographic analysis of a polysaccharide structure\u2013direct phase determination and model refinement for mannan I",
      "volume": "111",
      "author": "Dorset",
      "year": "1993",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib21",
      "doi-asserted-by": "crossref",
      "first-page": "206",
      "DOI": "10.1038/38323",
      "article-title": "Surface of bacteriorhodopsin revealed by high-resolution electron crystallography",
      "volume": "389",
      "author": "Kimura",
      "year": "1997",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib22",
      "doi-asserted-by": "crossref",
      "first-page": "516",
      "DOI": "10.1107/S0108767305024670",
      "article-title": "Electron crystallography of zeolites \u2013 the MWW family as a test of direct 3D structure determination",
      "volume": "A61",
      "author": "Dorset",
      "year": "2005",
      "journal-title": "Acta Crystallogr."
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib23",
      "doi-asserted-by": "crossref",
      "first-page": "199",
      "DOI": "10.1016/0304-3991(92)90015-C",
      "article-title": "Automatic focus correction for spot-scan imaging of tilted specimens",
      "volume": "46",
      "author": "Downing",
      "year": "1992",
      "journal-title": "Ultramicroscopy"
    },
    {
      "key": "10.1016/j.tibs.2007.10.002_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "1091",
      "DOI": "10.1126/science.1071142",
      "article-title": "The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism",
      "volume": "296",
      "author": "Locher",
      "year": "2002",
      "journal-title": "Science"
    }
  ],
  "container-title": "Trends in Biochemical Sciences",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0968000407002836?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0968000407002836?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2019,
        1,
        2
      ]
    ],
    "date-time": "2019-01-02T01:57:18Z",
    "timestamp": 1546394238000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S0968000407002836"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2008,
        1
      ]
    ]
  },
  "references-count": 24,
  "journal-issue": {
    "issue": "1",
    "published-print": {
      "date-parts": [
        [
          2008,
          1
        ]
      ]
    }
  },
  "alternative-id": [
    "S0968000407002836"
  ],
  "URL": "http://dx.doi.org/10.1016/j.tibs.2007.10.002",
  "relation": {},
  "ISSN": [
    "0968-0004"
  ],
  "subject": [],
  "container-title-short": "Trends in Biochemical Sciences",
  "published": {
    "date-parts": [
      [
        2008,
        1
      ]
    ]
  }
}