Crossref journal-article
Elsevier BV
Trends in Biochemical Sciences (78)
Bibliography

Hirokawa, G., Demeshkina, N., Iwakura, N., Kaji, H., & Kaji, A. (2006). The ribosome-recycling step: consensus or controversy? Trends in Biochemical Sciences, 31(3), 143–149.

Authors 5
  1. Go Hirokawa (first)
  2. Natalia Demeshkina (additional)
  3. Nobuhiro Iwakura (additional)
  4. Hideko Kaji (additional)
  5. Akira Kaji (additional)
References 55 Referenced 54
  1. 10.1073/pnas.58.3.1144 / Proc. Natl. Acad. Sci. U. S. A. / Polypeptide chain termination in vitro: isolation of a release factor by Capecchi (1967)
  2. 10.1073/pnas.61.2.768 / Proc. Natl. Acad. Sci. U. S. A. / Release factors differing in specificity for terminator codons by Scolnick (1968)
  3. 10.1038/372701a0 / Nature / A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor by Frolova (1994)
  4. 10.1101/SQB.1969.034.01.053 / Cold Spring Harb. Symp. Quant. Biol. / Characterization of three proteins involved in polypeptide chain termination by Capecchi (1969)
  5. 10.1073/pnas.67.2.537 / Proc. Natl. Acad. Sci. U. S. A. / Peptide chain termination: effect of protein S on ribosomal binding of release factors by Goldstein (1970)
  6. 10.1093/emboj/16.13.4126 / EMBO J. / Release factor RF3 in E.coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner by Freistroffer (1997)
  7. 10.1017/S1355838298971576 / RNA / Release factor RF-3 GTPase activity acts in disassembly of the ribosome termination complex by Grentzmann (1998)
  8. 10.1016/S0092-8674(01)00508-6 / Cell / A posttermination ribosomal complex is the guanine nucleotide exchange factor for peptide release factor RF3 by Zavialov (2001)
  9. 10.1016/0022-2836(67)90357-9 / J. Mol. Biol. / A mutant which reinitiates the polypeptide chain after chain termination by Sarabhai (1967)
  10. 10.1016/0022-2836(72)90490-1 / J. Mol. Biol. / Factor-dependent release of ribosomes from messenger RNA – requirement for two heat-stable factors by Hirashima (1972)
  11. 10.1021/bi00772a005 / Biochemistry / Purification and properties of ribosome-releasing factor by Hirashima (1972)
  12. 10.1073/pnas.91.10.4249 / Proc. Natl. Acad. Sci. U. S. A. / Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth by Janosi (1994)
  13. 10.1016/S0021-9258(19)43330-9 / J. Biol. Chem. / Role of elongation factor G and a protein factor on the release of ribosomes from messenger ribonucleic acid by Hirashima (1973)
  14. {'key': '10.1016/j.tibs.2006.01.007_bib14', 'first-page': '1721', 'article-title': 'Inhibition by puromycin of amino acid incorporation into protein', 'volume': '45', 'author': 'Yarmolinsky', 'year': '1959', 'journal-title': 'Biochemistry'} / Biochemistry / Inhibition by puromycin of amino acid incorporation into protein by Yarmolinsky (1959)
  15. 10.1016/S1097-2765(00)80353-6 / Mol. Cell / Novel roles for classical factors at the interface between translation termination and initiation by Karimi (1999)
  16. 10.1016/j.molcel.2005.04.009 / Mol. Cell / Sequence of steps in ribosome recycling as defined by kinetic analysis by Peske (2005)
  17. 10.1016/j.molcel.2005.05.016 / Mol. Cell / Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G by Zavialov (2005)
  18. 10.1261/rna.2520405 / RNA / The role of ribosome recycling factor in dissociation of 70S ribosomes into subunits by Hirokawa (2005)
  19. 10.1016/j.molcel.2005.05.005 / Mol. Cell / Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies by Gao (2005)
  20. 10.1111/j.1432-1033.1989.tb14925.x / Eur. J. Biochem. / The third ribosomal tRNA-binding site, the E site, is occupied in native polysomes by Remme (1989)
  21. 10.1093/emboj/21.9.2272 / EMBO J. / Post-termination complex disassembly by ribosome recycling factor, a functional tRNA mimic by Hirokawa (2002)
  22. 10.1016/0006-291X(71)90162-8 / Biochem. Biophys. Res. Commun. / Initiation factor dependent release of aminoacyl-tRNAs from complexes of 30S ribosomal subunits, synthetic polynucleotide and aminoacyl tRNA by Gualerzi (1971)
  23. 10.1016/0006-291X(65)90107-5 / Biochem. Biophys. Res. Commun. / Binding of specific sRNA to 30S subunits – comparison with the binding to 70S ribosomes by Suzuka (1965)
  24. 10.1126/science.1060089 / Science / Crystal structure of the ribosome at 5.5Å resolution by Yusupov (2001)
  25. 10.1101/sqb.2001.66.515 / Cold Spring Harb. Symp. Quant. Biol. / The fourth step of protein synthesis: disassembly of the posttermination complex is catalyzed by elongation factor G and ribosome recycling factor, a near-perfect mimic of tRNA by Kaji (2001)
  26. 10.1038/10695 / Nat. Struct. Biol. / EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome by Agrawal (1999)
  27. 10.1038/35018597 / Nature / A ratchet-like inter-subunit reorganization of the ribosome during translocation by Frank (2000)
  28. 10.1073/pnas.0401904101 / Proc. Natl. Acad. Sci. U. S. A. / Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications by Agrawal (2004)
  29. 10.1016/j.jmb.2005.06.027 / J. Mol. Biol. / Measurements of internal distance changes of the 30S ribosome using FRET with multiple donor–acceptor pairs: quantitative spectroscopic methods by Majumdar (2005)
  30. 10.1093/emboj/17.4.1141 / EMBO J. / Evidence for in vivo ribosome recycling, the fourth step in protein biosynthesis by Janosi (1998)
  31. 10.1111/j.1365-2958.2004.04324.x / Mol. Microbiol. / In vivo effect of inactivation of ribosome recycling factor – fate of ribosomes after unscheduled translation downstream of open reading frame by Hirokawa (2004)
  32. 10.1093/nar/gkh663 / Nucleic Acids Res. / Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs by Moll (2004)
  33. 10.1074/jbc.M308784200 / J. Biol. Chem. / Evidence for the translation initiation of leaderless mRNAs by the intact 70S ribosome without its dissociation into subunits in eubacteria by Udagawa (2004)
  34. 10.1016/S0022-2836(72)80025-1 / J. Mol. Biol. / Initiation factor IF-3: a specific inhibitor of ribosomal subunit association by Kaempfer (1972)
  35. 10.1038/2281273a0 / Nature / Activity of initiation factor F3 in dissociating Escherichia coli ribosomes by Subramanian (1970)
  36. 10.1016/S0014-5793(99)00302-6 / FEBS Lett. / Amber mutations in ribosome recycling factors of Escherichia coli and Thermus thermophilus: evidence for C-terminal modulator element by Fujiwara (1999)
  37. 10.1093/nar/gki864 / Nucleic Acids Res. / Evidence for a role of initiation factor 3 in recycling of ribosomal complexes stalled on mRNAs in Escherichia coli by Singh (2005)
  38. 10.1261/rna.7201805 / RNA / Interaction of RRF and EF-G from E. coli and T. thermophilus with ribosomes from both origins – insight into the mechanism of the ribosome recycling step by Raj (2005)
  39. 10.1021/bi048927p / Biochemistry / Kinetics and thermodynamics of RRF, EF-G, and thiostrepton interaction on the Escherichia coli ribosome by Seo (2004)
  40. 10.1017/S1355838201001704 / RNA / Functional mapping of ribosome-contact sites in the ribosome recycling factor: a structural view from a tRNA mimic by Fujiwara (2001)
  41. 10.1093/emboj/20.11.2977 / EMBO J. / Specific interaction between the ribosome recycling factor and the elongation factor G from Mycobacterium tuberculosis mediates peptidyl-tRNA release and ribosome recycling in Escherichia coli by Rao (2001)
  42. 10.1074/jbc.M208098200 / J. Biol. Chem. / Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium by Nakano (2003)
  43. 10.1111/j.1432-1033.1975.tb02388.x / Eur. J. Biochem. / Requirement for ribosome-releasing factor for the release of ribosomes at the termination codon by Ogawa (1975)
  44. 10.1093/emboj/19.14.3788 / EMBO J. / Role of ribosome recycling factor (RRF) in translational coupling by Inokuchi (2000)
  45. 10.1074/jbc.M304834200 / J. Biol. Chem. / Release of ribosome-bound ribosome recycling factor by elongation factor G by Kiel (2003)
  46. 10.1016/S0092-8674(02)00938-8 / Cell / Orientation of ribosome recycling factor in the ribosome from directed hydroxyl radical probing by Lancaster (2002)
  47. 10.1016/S0021-9258(18)63002-9 / J. Biol. Chem. / Release of transfer ribonucleic acid from ribosomes – AG factor and guanosine triphosphate-dependent reaction by Ishitsuka (1970)
  48. 10.1038/sj.emboj.7600525 / EMBO J. / X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit by Wilson (2005)
  49. 10.1016/S1097-2765(01)00356-2 / Mol. Cell / Interaction of translation initiation factor 3 with the 30S ribosomal subunit by Dallas (2001)
  50. 10.1126/science.1060612 / Science / Recognition of cognate transfer rna by the 30S ribosomal subunit by Ogle (2001)
  51. 10.1016/S0092-8674(01)00435-4 / Cell / The path of messenger RNA through the ribosome by Yusupova (2001)
  52. 10.1126/science.286.5448.2349 / Science / Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic by Selmer (1999)
  53. 10.1126/science.158.3801.658 / Science / Polyribosomes of growing bacteria by Flessel (1967)
  54. 10.1016/S0092-8674(01)00546-3 / Cell / High resolution structure of the large ribosomal subunit from a mesophilic eubacterium by Harms (2001)
  55. 10.1038/35030006 / Nature / Structure of the 30S ribosomal subunit by Wimberly (2000)
Dates
Type When
Created 19 years, 6 months ago (Feb. 20, 2006, 10:57 a.m.)
Deposited 2 years, 9 months ago (Nov. 17, 2022, 10:55 p.m.)
Indexed 6 months, 2 weeks ago (Feb. 21, 2025, 1:36 a.m.)
Issued 19 years, 6 months ago (March 1, 2006)
Published 19 years, 6 months ago (March 1, 2006)
Published Print 19 years, 6 months ago (March 1, 2006)
Funders 2
  1. Uehara Memorial Foundation 10.13039/100008732

    Region: Asia

    pri (Trusts, charities, foundations (both public and private))

    Labels4
    1. The Uehara Memorial Foundation
    2. Uehara Memorial Life Science Foundation
    3. 上原記念生命科学財団
    4. UMF
  2. National Institutes of Health 10.13039/100000002

    Region: Americas

    gov (National government)

    Labels3
    1. Institutos Nacionales de la Salud
    2. US National Institutes of Health
    3. NIH
    Awards1
    1. GM60429

@article{Hirokawa_2006, title={The ribosome-recycling step: consensus or controversy?}, volume={31}, ISSN={0968-0004}, url={http://dx.doi.org/10.1016/j.tibs.2006.01.007}, DOI={10.1016/j.tibs.2006.01.007}, number={3}, journal={Trends in Biochemical Sciences}, publisher={Elsevier BV}, author={Hirokawa, Go and Demeshkina, Natalia and Iwakura, Nobuhiro and Kaji, Hideko and Kaji, Akira}, year={2006}, month=mar, pages={143–149} }