Crossref
journal-article
Elsevier BV
Trends in Cell Biology (78)
References
91
Referenced
242
10.1038/nature00935
/ Nature / Functional profiling of the Saccharomyces cerevisiae genome by Giaever (2002)10.1038/nbt.1628
/ Nat. Biotechnol. / Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe by Kim (2010)10.1038/nbt.1832
/ Nat. Biotechnol. / Systematic exploration of essential yeast gene function with temperature-sensitive mutants by Li (2011)10.1126/science.285.5429.901
/ Science / Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis by Winzeler (1999)10.1002/biot.200900277
/ Biotechnol. J. / High-throughput RNAi screening to dissect cellular pathways: a how-to guide by Falschlehner (2010)10.1016/j.cell.2014.09.029
/ Cell / Genome-scale CRISPR-mediated control of gene repression and activation by Gilbert (2014)10.1016/j.tibtech.2010.02.005
/ Trends Biotechnol. / High content screening: seeing is believing by Zanella (2010)10.1016/j.devcel.2014.09.005
/ Dev. Cell / A genomic multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression by Graml (2014)10.1083/jcb.200909013
/ J. Cell Biol. / Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis by Vizeacoumar (2010)10.1038/nature08869
/ Nature / Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes by Neumann (2010)10.1016/j.cell.2014.04.029
/ Cell / A hierarchical map of regulatory genetic interactions in membrane trafficking by Liberali (2014)10.1038/ncb2510
/ Nat. Cell Biol. / Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway by Simpson (2012)10.1101/gr.111492.110
/ Genome Res. / Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling by Lindquist (2011)10.1038/nature11739
/ Nature / Functional screening identifies miRNAs inducing cardiac regeneration by Eulalio (2012)10.1038/nature09531
/ Nature / A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity by Chia (2010)10.1016/j.celrep.2012.08.015
/ Cell Rep. / High-throughput screening for bioactive molecules using primary cell culture of transgenic zebrafish embryos by Huang (2012)10.1371/journal.pone.0023841
/ PLoS ONE / High-content chemical and RNAi screens for suppressors of neurotoxicity in a Huntington's disease model by Schulte (2011)10.1371/journal.pone.0080645
/ PLoS ONE / Development and implementation of a high-throughput compound screening assay for targeting disrupted ER calcium homeostasis in Alzheimer's disease by Honarnejad (2013)10.1016/j.cell.2013.08.045
/ Cell / High-content siRNA screen reveals global ENaC regulators and potential cystic fibrosis therapy targets by Almaca (2013)10.1038/nature02026
/ Nature / Global analysis of protein localization in budding yeast by Huh (2003)10.1016/j.cell.2015.04.051
/ Cell / Yeast proteome dynamics from single cell imaging and automated analysis by Chong (2015)10.1016/j.molcel.2015.02.032
/ Mol. Cell / Expanding the biologist's toolkit with CRISPR-Cas9 by Sternberg (2015)10.1016/j.chembiol.2012.10.014
/ Chem. Biol. / Morphobase, an encyclopedic cell morphology database, and its use for drug target identification by Futamura (2012)10.1091/mbc.e13-07-0396
/ Mol. Biol. Cell / Distinct roles of cell wall biogenesis in yeast morphogenesis as revealed by multivariate analysis of high-dimensional morphometric data by Okada (2014)10.1038/nmeth.2436
/ Nat. Methods / Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping by Laufer (2013)10.7554/eLife.05464
/ Elife / A map of directional genetic interactions in a metazoan cell by Fischer (2015)10.1016/S0091-679X(06)81020-4
/ Methods Cell Biol. / Computational restoration of fluorescence images: noise reduction, deconvolution, and pattern recognition by Wang (2007){'issue': 'Suppl.', 'key': '10.1016/j.tcb.2016.03.008_bib0595', 'first-page': '299', 'article-title': 'The watershed transformation applied to image segmentation', 'volume': '6', 'author': 'Beucher', 'year': '1991', 'journal-title': 'Scan. Microsc. Int.'}
/ Scan. Microsc. Int. / The watershed transformation applied to image segmentation by Beucher (1991)10.1109/TSMC.1979.4310076
/ IEEE Trans. Syst. Man. Cybern. SMC / Threshold selection method from gray-level histograms by Otsu (1979)10.1002/wics.101
/ Wiley Interdiscip. Rev.: Comput. Stat. / Principal component analysis by Abdi (2010){'key': '10.1016/j.tcb.2016.03.008_bib0610', 'first-page': '1157', 'article-title': 'An introduction to variable and feature selection', 'volume': '3', 'author': 'Guyon', 'year': '2003', 'journal-title': 'J. Mach. Learn. Res.'}
/ J. Mach. Learn. Res. / An introduction to variable and feature selection by Guyon (2003)10.1177/108705719900400206
/ J. Biomol. Screen / A simple statistical parameter for use in evaluation and validation of high throughput screening assays by Zhang (1999)10.1177/1087057114528537
/ J. Biomol. Screen / Increasing the content of high-content screening: an overview by Singh (2014){'key': '10.1016/j.tcb.2016.03.008_bib0625', 'series-title': 'Theoretical Statistics', 'author': 'Cox', 'year': '1979'}
/ Theoretical Statistics by Cox (1979)10.1126/science.1100709
/ Science / Multidimensional drug profiling by automated microscopy by Perlman (2004)10.1038/nchembio.2007.53
/ Nat. Chem. Biol. / Integrating high-content screening and ligand-target prediction to identify mechanism of action by Young (2008){'key': '10.1016/j.tcb.2016.03.008_bib0640', 'series-title': 'Simultaneous statistical inference', 'author': 'Miller', 'year': '2012'}
/ Simultaneous statistical inference by Miller (2012)10.1214/aoms/1177706374
/ Ann. Math. Stat. / Estimation of the medians for dependent variables by Dunn (1959)10.1080/01621459.1961.10482090
/ J. Am. Stat. Assoc. / Multiple comparisons among means by Dunn (1961)10.1136/bmj.316.7139.1236
/ Br. Med. J. / What's wrong with Bonferroni adjustments by Perneger (1998)10.1371/journal.pcbi.0030116
/ PLoS Comput. Biol. / Machine learning and its applications to biology by Tarca (2007)10.1073/pnas.0808843106
/ Proc. Natl. Acad. Sci. U. S. A. / Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning by Jones (2009)10.1038/nmeth1032
/ Nat. Methods / Image-based multivariate profiling of drug responses from single cells by Loo (2007)10.1155/JBB.2005.87
/ J. Biomed. Biotechnol. / Objective clustering of proteins based on subcellular location patterns by Chen (2005)10.1126/science.1140324
/ Science / Quantitative morphological signatures define local signaling networks regulating cell morphology by Bakal (2007)10.1093/bioinformatics/17.12.1213
/ Bioinformatics / A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells by Boland (2001)10.1073/pnas.0807038105
/ Proc. Natl. Acad. Sci. U. S. A. / Characterizing heterogeneous cellular responses to perturbations by Slack (2008)10.1038/nature08282
/ Nature / Population context determines cell-to-cell variability in endocytosis and virus infection by Snijder (2009)10.1038/msb.2012.9
/ Mol. Syst. Biol. / Single-cell analysis of population context advances RNAi screening at multiple levels by Snijder (2012)10.1371/journal.ppat.1000437
/ PLoS Pathog. / Host cell factors in HIV replication: meta-analysis of genome-wide studies by Bushman (2009)10.1038/ncomms10237
/ Nat. Commun. / A generic strategy for CRISPR-Cas9-mediated gene tagging by Lackner (2015)10.1038/nrm2236
/ Nat. Rev. Mol. Cell Biol. / The third dimension bridges the gap between cell culture and live tissue by Pampaloni (2007)10.1083/jcb.201004104
/ J. Cell Biol. / Metadata matters: access to image data in the real world by Linkert (2010)10.1038/nmeth.1896
/ Nat. Methods / OMERO: flexible, model-driven data management for experimental biology by Allan (2012)10.1038/ng1201-365
/ Nat. Genet. / Minimum information about a microarray experiment (MIAME)-toward standards for microarray data by Brazma (2001)10.1038/nbt.1411
/ Nat. Biotechnol. / Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project by Taylor (2008)10.1038/nature11992
/ Nature / A systematic genome-wide analysis of zebrafish protein-coding gene function by Kettleborough (2013)10.1534/genetics.113.154344
/ Genetics / Resources for functional genomics studies in Drosophila melanogaster by Mohr (2014)10.1101/gr.157651.113
/ Genome Res. / The million mutation project: a new approach to genetics in Caenorhabditis elegans by Thompson (2013)10.1093/nar/gki912
/ Nucleic Acids Res. / Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells by Durai (2005)10.1038/nbt.1755
/ Nat. Biotechnol. / A TALE nuclease architecture for efficient genome editing by Miller (2011)10.1038/nrg3899
/ Nat. Rev. Genet. / High-throughput functional genomics using CRISPR-Cas9 by Shalem (2015)10.1016/j.cell.2013.08.022
/ Cell / One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering by Yang (2013)10.1126/science.1124618
/ Science / The fluorescent toolbox for assessing protein location and function by Giepmans (2006)10.2144/000113765
/ Biotechniques / Modern fluorescent proteins: from chromophore formation to novel intracellular applications by Stepanenko (2011)10.1002/0471142727.mb1420s92
/ Curr. Protoc. Mol. Biol. / Computer control of microscopes using microManager by Edelstein (2010)10.1186/1475-925X-2-13
/ Biomed. Eng. Online / ScanImage: flexible software for operating laser scanning microscopes by Pologruto (2003)10.1093/bioinformatics/btp699
/ Bioinformatics / Bisque: a platform for bioimage analysis and management by Kvilekval (2010)10.1186/1471-2105-12-468
/ BMC Bioinform. / openBIS: a flexible framework for managing and analyzing complex data in biology research by Bauch (2011)10.1038/nmeth.2047
/ Nat. Methods / BioImageXD: an open, general-purpose and high-throughput image-processing platform by Kankaanpaa (2012){'key': '10.1016/j.tcb.2016.03.008_bib0810', 'first-page': '36', 'article-title': 'Image processing with image', 'volume': '11', 'author': 'Abramoff', 'year': '2004', 'journal-title': 'J. Biophotonics Int.'}
/ J. Biophotonics Int. / Image processing with image by Abramoff (2004)10.1038/nmeth.2019
/ Nat. Methods / Fiji: an open-source platform for biological-image analysis by Schindelin (2012)10.1093/bioinformatics/btq046
/ Bioinformatics / EBImage--an R package for image processing with applications to cellular phenotypes by Pau (2010)10.1038/nmeth.1486
/ Nat. Methods / CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging by Held (2010)10.1186/gb-2006-7-10-r100
/ Genome Biol. / CellProfiler: image analysis software for identifying and quantifying cell phenotypes by Carpenter (2006)10.1186/1471-2105-9-482
/ BMC Bioinform. / CellProfiler Analyst: data exploration and analysis software for complex image-based screens by Jones (2008){'key': '10.1016/j.tcb.2016.03.008_bib0840', 'series-title': 'IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011', 'first-page': '230', 'article-title': 'Ilastik: interactive learning and segmentation toolkit', 'author': 'Sommer', 'year': '2011'}
/ IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011 / Ilastik: interactive learning and segmentation toolkit by Sommer (2011){'key': '10.1016/j.tcb.2016.03.008_bib0845', 'series-title': 'In Data Analysis, Machine Learning and Applications', 'first-page': '319', 'article-title': 'KNIME: The Konstanz Information Miner', 'author': 'Berthold', 'year': '2008'}
/ In Data Analysis, Machine Learning and Applications / KNIME: The Konstanz Information Miner by Berthold (2008){'key': '10.1016/j.tcb.2016.03.008_bib0850', 'first-page': '2349', 'article-title': 'Orange: data mining toolbox in python', 'volume': '14', 'author': 'Demšar', 'year': '2013', 'journal-title': 'J. Mach. Learn. Res.'}
/ J. Mach. Learn. Res. / Orange: data mining toolbox in python by Demšar (2013)10.1093/nar/gkt328
/ Nucleic Acids Res. / The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud by Wolstencroft (2013)10.1093/bioinformatics/bth261
/ Bioinformatics / Data mining in bioinformatics using Weka by Frank (2004)10.1093/jmicro/dfu007
/ Microscopy / Introduction to super-resolution microscopy by Yamanaka (2014)10.1073/pnas.1313368111
/ Proc. Natl. Acad. Sci. U. S. A. / High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization by Holden (2014)10.1016/j.molcel.2015.02.033
/ Mol. Cell / Imaging live-cell dynamics and structure at the single-molecule level by Liu (2015)10.1038/nbt.3146
/ Nat. Biotechnol. / High-throughput fluorescence correlation spectroscopy enables analysis of proteome dynamics in living cells by Wachsmuth (2015)10.1016/j.copbio.2013.08.013
/ Curr. Opin. Biotechnol. / Microfluidics for biological measurements with single-molecule resolution by Streets (2014)10.1073/pnas.1510328112
/ Proc. Natl. Acad. Sci. U. S. A. / High-throughput analysis of yeast replicative aging using a microfluidic system by Jo (2015)10.1369/0022155412453052
/ J. Histochem. Cytochem. / Imaging flow cytometry: coping with heterogeneity in biological systems by Barteneva (2012)10.1126/science.1214100
/ Science / Asymmetric segregation of polarized antigen on B cell division shapes presentation capacity by Thaunat (2012)10.1016/j.jprot.2014.03.021
/ J. Proteomics / MALDI imaging mass spectrometry: spatial molecular analysis to enable a new age of discovery by Gessel (2014)10.1016/j.jprot.2009.10.011
/ J. Proteomics / Automated imaging MS: toward high throughput imaging mass spectrometry by McDonnell (2010)
Dates
Type | When |
---|---|
Created | 9 years, 3 months ago (April 30, 2016, 5:05 p.m.) |
Deposited | 5 years, 11 months ago (Sept. 7, 2019, 1:57 a.m.) |
Indexed | 3 days, 15 hours ago (Aug. 22, 2025, 12:55 a.m.) |
Issued | 9 years ago (Aug. 1, 2016) |
Published | 9 years ago (Aug. 1, 2016) |
Published Print | 9 years ago (Aug. 1, 2016) |
@article{Mattiazzi_Usaj_2016, title={High-Content Screening for Quantitative Cell Biology}, volume={26}, ISSN={0962-8924}, url={http://dx.doi.org/10.1016/j.tcb.2016.03.008}, DOI={10.1016/j.tcb.2016.03.008}, number={8}, journal={Trends in Cell Biology}, publisher={Elsevier BV}, author={Mattiazzi Usaj, Mojca and Styles, Erin B. and Verster, Adrian J. and Friesen, Helena and Boone, Charles and Andrews, Brenda J.}, year={2016}, month=aug, pages={598–611} }