DOI: 10.1016/j.str.2011.12.007. Iterative Stable Alignment and Clustering of 2D Transmission Electron Microscope Images

Iterative Stable Alignment and Clustering of 2D Transmission Electron Microscope Images

10.1016/j.str.2011.12.007

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

Yang, Z., Fang, J., Chittuluru, J., Asturias, F. J., & Penczek, P. A. (2012). Iterative Stable Alignment and Clustering of 2D Transmission Electron Microscope Images. Structure, 20(2), 237â247.

Authors 5

Zhengfan Yang (first)
Jia Fang (additional)
Johnathan Chittuluru (additional)
Francisco J. Asturias (additional)
Pawel A. Penczek (additional)

References 21 Referenced 248

10.1074/jbc.M413038200 / J. Biol. Chem. / Structures of complete RNA polymerase II and its subcomplex, Rpb4/7 by Armache (2005)
10.1016/j.jsb.2006.06.002 / J. Struct. Biol. / The transform class in SPARX and EMAN2 by Baldwin (2007)
{'key': '10.1016/j.str.2011.12.007_bib3', 'series-title': 'Assignment Problems', 'author': 'Burkard', 'year': '2009'} / Assignment Problems by Burkard (2009)
{'key': '10.1016/j.str.2011.12.007_bib4', 'series-title': 'Pattern Classification', 'author': 'Duda', 'year': '2001'} / Pattern Classification by Duda (2001)
10.1007/s10589-005-4558-6 / Comput. Optim. Appl. / Test problem generator for the multidimensional assignment problem by Grundel (2005)
10.1016/j.jsb.2006.07.003 / J. Struct. Biol. / SPARX, a new environment for Cryo-EM image processing by Hohn (2007)
10.1016/S0304-3991(01)00154-1 / Ultramicroscopy / Efficiency of 2D alignment methods by Joyeux (2002)
{'key': '10.1016/j.str.2011.12.007_bib8', 'series-title': 'London Algorithmics 2008: Theory and Practice', 'first-page': '107', 'article-title': 'Empirical evaluation of\xa0construction heuristics for the multidimensional assignment problem', 'author': 'Karapetyan', 'year': '2008'} / London Algorithmics 2008: Theory and Practice / Empirical evaluation of construction heuristics for the multidimensional assignment problem by Karapetyan (2008)
10.1016/j.str.2006.09.011 / Structure / Molecular architecture and conformational flexibility of human RNA polymerase II by Kostek (2006)
{'key': '10.1016/j.str.2011.12.007_bib10', 'series-title': 'Parallel Programming with MPI', 'author': 'Pacheco', 'year': '1996'} / Parallel Programming with MPI by Pacheco (1996)
10.1016/0304-3991(92)90233-A / Ultramicroscopy / Three-dimensional reconstruction of single particles embedded in ice by Penczek (1992)
10.1016/0304-3991(95)00078-X / Ultramicroscopy / Double-tilt electron tomography by Penczek (1995)
{'key': '10.1016/j.str.2011.12.007_bib13', 'series-title': 'International Tables for Crystallography', 'first-page': '375', 'article-title': 'Single Particle Reconstruction', 'author': 'Penczek', 'year': '2008'} / International Tables for Crystallography / Single Particle Reconstruction by Penczek (2008)
10.1016/S0076-6879(10)82003-8 / Methods Enzymol. / Resolution measures in molecular electron microscopy by Penczek (2010)
10.1016/0304-3991(96)00037-X / Ultramicroscopy / A common-lines based method for determining orientations for N > 3 particle projections simultaneously by Penczek (1996)
10.1016/j.str.2011.10.003 / Struct. / ). Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images by Penczek (2011)
10.1038/emboj.2009.26 / EMBO J. / GTPase activation of elongation factor EF-Tu by the ribosome during decoding by Schuette (2009)
10.1016/j.jsb.2010.03.011 / J. Struct. Biol. / A clustering approach to multireference alignment of single-particle projections in electron microscopy by Sorzano (2010)
10.1016/j.sbi.2009.08.001 / Curr. Opin. Struct. Biol. / Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM by Spahn (2009)
10.1016/0304-3991(84)90066-4 / Ultramicroscopy / Multivariate statistical classification of noisy images (randomly oriented biological macromolecules) by van Heel (1984)
10.1145/279232.279236 / ACM Trans. Math. Softw. / L-BFGS-B: Algorithm 778: L-BFGS-B, FORTRAN routines for large scale bound constrained optimization by Zhu (1997)

Dates

Type	When
Created	13 years, 6 months ago (Feb. 7, 2012, 9:47 a.m.)
Deposited	6 years, 8 months ago (Nov. 26, 2018, 7:51 a.m.)
Indexed	17 hours, 55 minutes ago (Aug. 21, 2025, 12:40 p.m.)
Issued	13 years, 6 months ago (Feb. 1, 2012)
Published	13 years, 6 months ago (Feb. 1, 2012)
Published Print	13 years, 6 months ago (Feb. 1, 2012)

Funders 0

None

BibTeX

@article{Yang_2012, title={Iterative Stable Alignment and Clustering of 2D Transmission Electron Microscope Images}, volume={20}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2011.12.007}, DOI={10.1016/j.str.2011.12.007}, number={2}, journal={Structure}, publisher={Elsevier BV}, author={Yang, Zhengfan and Fang, Jia and Chittuluru, Johnathan and Asturias, Francisco J. and Penczek, Pawel A.}, year={2012}, month=feb, pages={237–247} }

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