DOI: 10.1016/j.str.2009.07.012. Probing the “Dark Matter” of Protein Fold Space

Probing the “Dark Matter” of Protein Fold Space

10.1016/j.str.2009.07.012

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

Taylor, W. R., Chelliah, V., Hollup, S. M., MacDonald, J. T., & Jonassen, I. (2009). Probing the âDark Matterâ of Protein Fold Space. Structure, 17(9), 1244â1252.

Authors 5

William R. Taylor (first)
Vijayalakshmi Chelliah (additional)
Siv Midtun Hollup (additional)
James T. MacDonald (additional)
Inge Jonassen (additional)

References 24 Referenced 82

10.1093/nar/25.17.3389 / Nucleic Acids Res. / Gapped BLAST and PSI-BLAST: a new generation of protein database search programs by Altschul (1997)
10.1006/jmbi.1995.0436 / J. Mol. Biol. / Global fold determination from a small number of distance restraints by Aszódi (1995)
10.1016/j.str.2005.05.009 / Structure / Connecting the protein structure universe by using sparse recurring fragments by Friedberg (2005)
10.1186/gb-2004-5-5-107 / Genome Biol. / Progress towards mapping the universe of protein folds by Grant (2004)
10.1006/jmbi.1993.1489 / J. Mol. Biol. / Protein-structure comparison by alignment of distance matrices by Holm (1993)
10.1093/protein/gzg128 / Prot. Eng. / Protein fold comparison by the alignment of topological strings by Johannissen (2004)
10.1093/bioinformatics/16.4.404 / Bioinformatics / The PSIPRED protein structure prediction server by Jones (2000)
10.1016/j.sbi.2006.04.007 / Curr. Opin. Struct. Biol. / Protein structure comparison: implications for the nature of ’fold space’, and structure and function prediction by Kolodny (2006)
10.1093/bioinformatics/18.10.1350 / Bioinformatics / Threading using neural networks (TUNE): the measure of protein sequence-structure compatibility by Lin (2002)
10.1016/j.jmb.2004.12.055 / J. Mol. Biol. / Folding studies on a knotted protein by Mallam (2005)
{'key': '10.1016/j.str.2009.07.012_bib13', 'first-page': '1', 'article-title': 'Is protein classification necessary? towards\xa0alternative approaches to function prediction', 'volume': '19', 'author': 'Petery', 'year': '2009', 'journal-title': 'Curr. Opin. Struct. Biol.'} / Curr. Opin. Struct. Biol. / Is protein classification necessary? towards alternative approaches to function prediction by Petery (2009)
10.1006/jmbi.1998.1645 / J. Mol. Biol. / Contact order, transition state placement and the refolding rates of single domain proteins by Plaxco (1998)
10.1016/j.sbi.2009.04.009 / Curr. Opin. Struct. Biol. / Discrete-continuous duality of protein structure space by Sadreyev (2009)
10.1110/ps.8.3.654 / Protein Sci. / Protein structure alignment using iterated double dynamic programming by Taylor (1999)
10.1038/35022623 / Nature / A deeply knotted protein and how it might fold by Taylor (2000)
10.1038/416657a / Nature / A periodic table for protein structure by Taylor (2002)
10.1016/j.febslet.2006.08.070 / FEBS Lett. / Topological accessibility shows a distinct asymmetry in the folds of βα proteins by Taylor (2006)
10.1016/j.compbiolchem.2007.03.002 / Comput. Biol. Chem. / Protein knots and fold complexity: some new twists by Taylor (2007)
10.1016/j.sbi.2007.06.002 / Curr. Opin. Struct. Biol. / Evolutionary transitions in protein fold space by Taylor (2007)
{'key': '10.1016/j.str.2009.07.012_bib26', 'series-title': 'Protein Geometry, Classification, Topology and Symmetry: A Computational Analysis of Structure', 'author': 'Taylor', 'year': '2005'} / Protein Geometry, Classification, Topology and Symmetry: A Computational Analysis of Structure by Taylor (2005)
10.1002/prot.21913 / Proteins / Prediction of protein structure from ideal forms by Taylor (2008)
10.1073/pnas.0509379103 / Proc. Natl. Acad. Sci. USA / On the origin and highly likely completeness of single-domain protein structures by Zhang (2006)
10.1073/pnas.0407152101 / Proc. Natl. Acad. Sci. USA / The protein structure prediction problem could be solved using the current PDB library by Zhang (2005)
10.1093/nar/gki524 / Nucleic Acids Res. / A protein structure alignment algorithm based on TM-score by Zhang (2005)

Dates

Type	When
Created	15 years, 11 months ago (Sept. 11, 2009, 2:03 a.m.)
Deposited	6 years, 8 months ago (Dec. 16, 2018, 9:26 p.m.)
Indexed	1 month ago (July 24, 2025, 7:58 a.m.)
Issued	15 years, 11 months ago (Sept. 1, 2009)
Published	15 years, 11 months ago (Sept. 1, 2009)
Published Print	15 years, 11 months ago (Sept. 1, 2009)

Funders 0

None

BibTeX

@article{Taylor_2009, title={Probing the “Dark Matter” of Protein Fold Space}, volume={17}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2009.07.012}, DOI={10.1016/j.str.2009.07.012}, number={9}, journal={Structure}, publisher={Elsevier BV}, author={Taylor, William R. and Chelliah, Vijayalakshmi and Hollup, Siv Midtun and MacDonald, James T. and Jonassen, Inge}, year={2009}, month=sep, pages={1244–1252} }

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