DOI: 10.1016/j.str.2008.10.011. Heterogeneity of Large Macromolecular Complexes Revealed by 3D Cryo-EM Variance Analysis

Heterogeneity of Large Macromolecular Complexes Revealed by 3D Cryo-EM Variance Analysis

10.1016/j.str.2008.10.011

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

Zhang, W., Kimmel, M., Spahn, C. M. T., & Penczek, P. A. (2008). Heterogeneity of Large Macromolecular Complexes Revealed by 3D Cryo-EM Variance Analysis. Structure, 16(12), 1770â1776.

Authors 4

Wei Zhang (first)
Marek Kimmel (additional)
Christian M.T. Spahn (additional)
Pawel A. Penczek (additional)

References 32 Referenced 67

10.1016/j.cell.2005.03.023 / Cell / The cryo-EM structure of a translation initiation complex from Escherichia coli by Allen (2005)
10.1071/PH560198 / Aust. J. Phys. / Strip integration in radio astronomy by Bracewell (1956)
10.1086/149346 / Astrophys. J. / Inversion of fan-beam scans in radio astronomy by Bracewell (1967)
10.1016/j.molcel.2007.01.027 / Mol. Cell / Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors by Connell (2007)
{'key': '10.1016/j.str.2008.10.011_bib5', 'series-title': 'Bootstrap methods and their application', 'author': 'Davison', 'year': '1997'} / Bootstrap methods and their application by Davison (1997)
10.1038/35018597 / Nature / A ratchet-like inter-subunit reorganization of the ribosome during translocation by Frank (2000)
10.1126/science.7313694 / Science / Computer averaging of electron micrographs of 40S ribosomal subunits by Frank (1981)
10.1016/j.cell.2007.03.050 / Cell / RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors by Gao (2007)
10.1073/pnas.0606880104 / Proc. Natl. Acad. Sci. USA / Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex by Gilbert (2007)
10.1016/j.str.2005.11.020 / Structure / Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues by Grob (2006)
{'key': '10.1016/j.str.2008.10.011_bib11', 'volume': 'Volume 2', 'author': 'Hansen', 'year': '1953'} by Hansen (1953)
{'key': '10.1016/j.str.2008.10.011_bib12', 'first-page': '146', 'article-title': 'Exact filters for general geometry three dimensional reconstruction', 'volume': '73', 'author': 'Harauz', 'year': '1986', 'journal-title': 'Optik'} / Optik / Exact filters for general geometry three dimensional reconstruction by Harauz (1986)
10.1016/j.jsb.2006.07.003 / J. Struct. Biol. / SPARX, a new environment for Cryo-EM image processing by Hohn (2007)
10.1016/j.str.2008.02.007 / Structure / De novo backbone trace of GroEL from single particle electron cryomicroscopy by Ludtke (2008)
10.1016/j.molcel.2007.10.003 / Mol. Cell / Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1 by Ohi (2007)
10.1016/0304-3991(92)90233-A / Ultramicroscopy / Three-dimensional reconstruction of single particles embedded in ice by Penczek (1992)
10.1016/S1047-8477(02)00033-3 / J. Struct. Biol. / Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms by Penczek (2002)
10.1016/j.jsb.2006.01.003 / J. Struct. Biol. / Estimation of variance in single particle reconstruction using the bootstrap technique by Penczek (2006)
10.1016/0304-3991(94)90038-8 / Ultramicroscopy / The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles by Penczek (1994)
{'key': '10.1016/j.str.2008.10.011_bib20', 'first-page': '147', 'article-title': 'Three-dimensional reconstruction with contrast transfer function compensation from defocus series', 'volume': '11', 'author': 'Penczek', 'year': '1997', 'journal-title': 'Scanning Microsc. Suppl.'} / Scanning Microsc. Suppl. / Three-dimensional reconstruction with contrast transfer function compensation from defocus series by Penczek (1997)
10.1364/JOSAA.21.000499 / J. Opt. Soc. Am. A Opt. Image Sci. Vis. / Gridding-based direct Fourier inversion of the three-dimensional ray transform by Penczek (2004)
{'key': '10.1016/j.str.2008.10.011_bib22', 'series-title': 'Electron Tomography', 'first-page': '91', 'article-title': 'Weighted back-projection methods', 'author': 'Radermacher', 'year': '1992'} / Electron Tomography / Weighted back-projection methods by Radermacher (1992)
10.1038/sj.embor.7400847 / EMBO Rep. / Structural model of full-length human Ku70-Ku80 heterodimer and its recognition of DNA and DNA-PKcs by Rivera-Calzada (2007)
10.1111/j.1365-2818.1982.tb00405.x / J. Microsc. / The correlation averaging of a regularly arranged bacterial envelope protein by Saxton (1982)
10.1038/nsmb1177 / Nat. Struct. Mol. Biol. / Structure of the ribosome-bound cricket paralysis virus IRES RNA by Schüler (2006)
10.1126/science.1117230 / Science / Structures of the bacterial ribosome at 3.5 A resolution by Schuwirth (2005)
10.1126/science.1131127 / Science / Structure of the 70S ribosome complexed with mRNA and tRNA by Selmer (2006)
10.1038/sj.emboj.7600102 / EMBO J. / Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation by Spahn (2004)
10.1016/S1097-2765(01)00238-6 / Mol. Cell / Localization of the ribosomal protection protein Tet(O) on the ribosome and the mechanism of tetracycline resistance by Spahn (2001)
10.1016/0304-3991(87)90225-7 / Ultramicroscopy / A new resolution criterion based on spectral signal-to-noise ratios by Unser (1987)
10.1016/S0092-8674(03)00476-8 / Cell / Locking and unlocking of ribosomal motions by Valle (2003)
10.1017/S0033583500003644 / Q. Rev. Biophys. / Single-particle electron cryo-microscopy: towards atomic resolution by van Heel (2000)

Dates

Type	When
Created	16 years, 8 months ago (Dec. 10, 2008, 6:11 a.m.)
Deposited	6 years, 8 months ago (Dec. 23, 2018, 9:21 a.m.)
Indexed	1 year ago (Aug. 15, 2024, 7:12 a.m.)
Issued	16 years, 8 months ago (Dec. 1, 2008)
Published	16 years, 8 months ago (Dec. 1, 2008)
Published Print	16 years, 8 months ago (Dec. 1, 2008)

Funders 0

None

BibTeX

@article{Zhang_2008, title={Heterogeneity of Large Macromolecular Complexes Revealed by 3D Cryo-EM Variance Analysis}, volume={16}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2008.10.011}, DOI={10.1016/j.str.2008.10.011}, number={12}, journal={Structure}, publisher={Elsevier BV}, author={Zhang, Wei and Kimmel, Marek and Spahn, Christian M.T. and Penczek, Pawel A.}, year={2008}, month=dec, pages={1770–1776} }

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