DOI: 10.1016/j.str.2006.12.008. A Snapshot of the 30S Ribosomal Subunit Capturing mRNA via the Shine-Dalgarno Interaction

A Snapshot of the 30S Ribosomal Subunit Capturing mRNA via the Shine-Dalgarno Interaction

10.1016/j.str.2006.12.008

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

Kaminishi, T., Wilson, D. N., Takemoto, C., Harms, J. M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., & Yokoyama, S. (2007). A Snapshot of the 30S Ribosomal Subunit Capturing mRNA via the Shine-Dalgarno Interaction. Structure, 15(3), 289â297.

Authors 10

Tatsuya Kaminishi (first)
Daniel N. Wilson (additional)
Chie Takemoto (additional)
Joerg M. Harms (additional)
Masahito Kawazoe (additional)
Frank Schluenzen (additional)
Kyoko Hanawa-Suetsugu (additional)
Mikako Shirouzu (additional)
Paola Fucini (additional)
Shigeyuki Yokoyama (additional)

References 46 Referenced 94

10.1038/sj.emboj.7601140 / EMBO J. / How initiation factors tune the rate of initiation of protein synthesis in bacteria by Antoun (2006)
10.1016/j.molcel.2006.05.030 / Mol. Cell / How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis by Antoun (2006)
10.1016/j.tig.2006.01.005 / Trends Genet. / Recoding in bacteriophages and bacterial IS elements by Baranov (2006)
10.1107/S0907444998003254 / Acta Crystallogr. D Biol. Crystallogr. / Crystallography & NMR system: a new software suite for macromolecular structure determination by Brunger (1998)
10.1073/pnas.85.17.6427 / Proc. Natl. Acad. Sci. USA / Selection of the mRNA translation initiation region by Escherichia coli ribosomes by Calogero (1988)
10.1186/1471-2105-3-2 / BMC Bioinformatics / The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs by Cannone (2002)
10.1111/j.1432-1033.1989.tb14856.x / Eur. J. Biochem. / Alternative occupancy of a dual ribosomal binding site by mRNA affected by translation initiation factors by Canonaco (1989)
10.1126/science.1057766 / Science / Crystal structure of an initiation factor bound to the 30S ribosomal subunit by Carter (2001)
10.1107/S0907444994003112 / Acta Crystallogr. D Biol. Crystallogr. / The CCP4 suite: programs for protein crystallography (1994)
10.1016/S0022-2836(05)80024-5 / J. Mol. Biol. / Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction by de Smit (1994)
10.1016/S0022-2836(03)00809-X / J. Mol. Biol. / Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA by de Smit (2003)
10.1016/j.cell.2005.04.015 / Cell / Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation by Diaconu (2005)
10.1002/j.1460-2075.1991.tb07803.x / EMBO J. / The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon by Dontsova (1991)
10.1016/0076-6879(90)85009-D / Methods Enzymol. / High-level translation initiation by Gold (1990)
10.1021/bi00477a001 / Biochemistry / Initiation of mRNA translation in prokaryotes by Gualerzi (1990)
10.1101/sqb.2001.66.363 / Cold Spring Harb. Symp. Quant. Biol. / Initiation factors in the early events of mRNA translation in bacteria by Gualerzi (2001)
10.1128/jb.171.6.2933-2941.1989 / J. Bacteriol. / Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit by Hartmann (1989)
10.1073/pnas.84.14.4762 / Proc. Natl. Acad. Sci. USA / Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli by Hui (1987)
10.1002/j.1460-2075.1994.tb06700.x / EMBO J. / Footprinting mRNA-ribosome complexes with chemical probes by Huttenhofer (1994)
10.1073/pnas.84.14.4757 / Proc. Natl. Acad. Sci. USA / A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins by Jacob (1987)
10.1126/science.1105639 / Science / Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding by Jenner (2005)
10.1107/S0021889893005588 / J. Appl. Cryst. / Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants by Kabsch (1993)
10.1016/S1097-2765(00)80353-6 / Mol. Cell / Novel roles for classical factors at the interface between translation termination and initiation by Karimi (1999)
10.1017/S1355838202029990 / RNA / Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation by Komarova (2002)
{'key': '10.1016/j.str.2006.12.008_bib25', 'first-page': '772', 'article-title': 'From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors', 'volume': '1', 'author': 'La Teana', 'year': '1995', 'journal-title': 'RNA'} / RNA / From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors by La Teana (1995)
10.1128/MMBR.69.1.101-123.2005 / Microbiol. Mol. Biol. Rev. / Initiation of protein synthesis in bacteria by Laursen (2005)
{'key': '10.1016/j.str.2006.12.008_bib27', 'series-title': 'Molecular Modeling of Nucleic Acids', 'first-page': '379', 'article-title': 'Modeling unusual nucleic acid structures', 'author': 'Macke', 'year': '1998'} / Molecular Modeling of Nucleic Acids / Modeling unusual nucleic acid structures by Macke (1998)
10.1016/0168-9525(94)90057-4 / Trends Genet. / Prokaryotic translation: the interactive pathway leading to initiation by McCarthy (1994)
10.1016/S0968-0004(03)00066-5 / Trends Biochem. Sci. / Insights into the decoding mechanism from recent ribosome structures by Ogle (2003)
10.1093/emboj/20.16.4560 / EMBO J. / Translation initiation factor IF3: two domains, five functions, one mechanism? by Petrelli (2001)
10.1021/bi00089a048 / Biochemistry / Nature of the ribosomal mRNA track: analysis of ribosome-binding sites containing different sequences and secondary structures by Ringquist (1993)
{'key': '10.1016/j.str.2006.12.008_bib32', 'series-title': 'Laboratory Manual and Handbook for Escherichia coli and Related Bacteria', 'first-page': '17.19', 'article-title': 'Compilation of E. coli ribosome binding sites', 'author': 'Rudd', 'year': '1992'} / Laboratory Manual and Handbook for Escherichia coli and Related Bacteria / Compilation of E. coli ribosome binding sites by Rudd (1992)
10.1006/jmbi.1995.0321 / J. Mol. Biol. / Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence by Schindelin (1995)
10.1016/S0092-8674(00)00084-2 / Cell / Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution by Schluenzen (2000)
10.1126/science.1117230 / Science / Structures of the bacterial ribosome at 3.5 Å resolution by Schuwirth (2005)
10.1126/science.1131127 / Science / Structure of the 70S ribosome complexed with mRNA and tRNA by Selmer (2006)
10.1016/j.molcel.2005.03.028 / Mol. Cell / Interaction of Era with the 30S ribosomal subunit: implications for 30S subunit assembly by Sharma (2005)
10.1073/pnas.71.4.1342 / Proc. Natl. Acad. Sci. USA / The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites by Shine (1974)
10.1073/pnas.72.12.4734 / Proc. Natl. Acad. Sci. USA / How ribosomes select initiator regions in mRNA: base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli by Steitz (1975)
10.1016/j.molcel.2006.02.014 / Mol. Cell / Unfolding of mRNA secondary structure by the bacterial translation initiation complex by Studer (2006)
{'key': '10.1016/j.str.2006.12.008_bib41', 'series-title': 'Translational Control', 'first-page': '759', 'article-title': 'Control of Translation Initiation in Prokaryotes', 'author': 'Voorma', 'year': '1996'} / Translational Control / Control of Translation Initiation in Prokaryotes by Voorma (1996)
10.1016/S0021-9258(19)68177-9 / J. Biol. Chem. / The binding of fluorescein-labeled protein synthesis initiation factor 2 to Escherichia coli 30 S ribosomal subunits determined by fluorescence polarization by Weiel (1982)
10.1038/35030006 / Nature / Structure of the 30S ribosomal subunit by Wimberly (2000)
10.1021/bi00272a025 / Biochemistry / Effect of Escherichia coli initiation factors on the kinetics of N-Acphe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study by Wintermeyer (1983)
10.1016/S0092-8674(01)00435-4 / Cell / The path of messenger RNA through the ribosome by Yusupova (2001)
10.1038/nature05281 / Nature / Structural basis for messenger RNA movement on the ribosome by Yusupova (2006)

Dates

Type	When
Created	18 years, 4 months ago (April 7, 2007, 7:17 a.m.)
Deposited	3 years, 1 month ago (July 6, 2022, 8 a.m.)
Indexed	1 month, 1 week ago (July 12, 2025, 6:50 p.m.)
Issued	18 years, 5 months ago (March 1, 2007)
Published	18 years, 5 months ago (March 1, 2007)
Published Print	18 years, 5 months ago (March 1, 2007)

Funders 3

RIKEN 10.13039/501100006264
Region: Asia
pri (Research institutes and centers)
Labels1
1. 理研
Deutsche Forschungsgemeinschaft 10.13039/501100001659
Region: Europe
gov (National government)
Labels3
1. German Research Association
2. German Research Foundation
3. DFG
Ministry of Education, Culture, Sports, Science and Technology 10.13039/501100001700
Region: Asia
gov (National government)
Labels3
1. Monbu-kagaku-shō
2. 文部科学省
3. MEXT

BibTeX

@article{Kaminishi_2007, title={A Snapshot of the 30S Ribosomal Subunit Capturing mRNA via the Shine-Dalgarno Interaction}, volume={15}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2006.12.008}, DOI={10.1016/j.str.2006.12.008}, number={3}, journal={Structure}, publisher={Elsevier BV}, author={Kaminishi, Tatsuya and Wilson, Daniel N. and Takemoto, Chie and Harms, Joerg M. and Kawazoe, Masahito and Schluenzen, Frank and Hanawa-Suetsugu, Kyoko and Shirouzu, Mikako and Fucini, Paola and Yokoyama, Shigeyuki}, year={2007}, month=mar, pages={289–297} }

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      "author": "Antoun",
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      "journal-title": "EMBO J."
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      "doi-asserted-by": "crossref",
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      "DOI": "10.1016/j.molcel.2006.05.030",
      "article-title": "How initiation factors maximize the accuracy of tRNA selection in initiation of bacterial protein synthesis",
      "volume": "23",
      "author": "Antoun",
      "year": "2006",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib3",
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      "first-page": "174",
      "DOI": "10.1016/j.tig.2006.01.005",
      "article-title": "Recoding in bacteriophages and bacterial IS elements",
      "volume": "22",
      "author": "Baranov",
      "year": "2006",
      "journal-title": "Trends Genet."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib4",
      "doi-asserted-by": "crossref",
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      "DOI": "10.1107/S0907444998003254",
      "article-title": "Crystallography & NMR system: a new software suite for macromolecular structure determination",
      "volume": "54",
      "author": "Brunger",
      "year": "1998",
      "journal-title": "Acta Crystallogr. D\u00a0Biol. Crystallogr."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib5",
      "doi-asserted-by": "crossref",
      "first-page": "6427",
      "DOI": "10.1073/pnas.85.17.6427",
      "article-title": "Selection of the mRNA translation initiation region by Escherichia coli ribosomes",
      "volume": "85",
      "author": "Calogero",
      "year": "1988",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib6",
      "doi-asserted-by": "crossref",
      "first-page": "2",
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      "article-title": "The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs",
      "volume": "3",
      "author": "Cannone",
      "year": "2002",
      "journal-title": "BMC Bioinformatics"
    },
    {
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      "doi-asserted-by": "crossref",
      "first-page": "501",
      "DOI": "10.1111/j.1432-1033.1989.tb14856.x",
      "article-title": "Alternative occupancy of a dual ribosomal binding site by mRNA affected by translation initiation factors",
      "volume": "182",
      "author": "Canonaco",
      "year": "1989",
      "journal-title": "Eur. J. Biochem."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib8",
      "doi-asserted-by": "crossref",
      "first-page": "498",
      "DOI": "10.1126/science.1057766",
      "article-title": "Crystal structure of an initiation factor bound to the 30S ribosomal subunit",
      "volume": "291",
      "author": "Carter",
      "year": "2001",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib9",
      "doi-asserted-by": "crossref",
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      "article-title": "The CCP4 suite: programs for protein crystallography",
      "volume": "50",
      "year": "1994",
      "journal-title": "Acta Crystallogr. D Biol. Crystallogr."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib10",
      "doi-asserted-by": "crossref",
      "first-page": "173",
      "DOI": "10.1016/S0022-2836(05)80024-5",
      "article-title": "Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction",
      "volume": "235",
      "author": "de Smit",
      "year": "1994",
      "journal-title": "J.\u00a0Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib11",
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      "first-page": "737",
      "DOI": "10.1016/S0022-2836(03)00809-X",
      "article-title": "Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA",
      "volume": "331",
      "author": "de Smit",
      "year": "2003",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "991",
      "DOI": "10.1016/j.cell.2005.04.015",
      "article-title": "Structural basis for the function of the ribosomal L7/12 stalk in factor binding and GTPase activation",
      "volume": "121",
      "author": "Diaconu",
      "year": "2005",
      "journal-title": "Cell"
    },
    {
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      "doi-asserted-by": "crossref",
      "first-page": "2613",
      "DOI": "10.1002/j.1460-2075.1991.tb07803.x",
      "article-title": "The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon",
      "volume": "10",
      "author": "Dontsova",
      "year": "1991",
      "journal-title": "EMBO J."
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      "key": "10.1016/j.str.2006.12.008_bib14",
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      "first-page": "89",
      "DOI": "10.1016/0076-6879(90)85009-D",
      "article-title": "High-level translation initiation",
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      "author": "Gold",
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      "first-page": "5881",
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      "article-title": "Initiation of mRNA translation in prokaryotes",
      "volume": "29",
      "author": "Gualerzi",
      "year": "1990",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib16",
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      "first-page": "363",
      "DOI": "10.1101/sqb.2001.66.363",
      "article-title": "Initiation factors in the early events of mRNA translation in bacteria",
      "volume": "66",
      "author": "Gualerzi",
      "year": "2001",
      "journal-title": "Cold Spring Harb. Symp. Quant. Biol."
    },
    {
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      "first-page": "2933",
      "DOI": "10.1128/jb.171.6.2933-2941.1989",
      "article-title": "Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit",
      "volume": "171",
      "author": "Hartmann",
      "year": "1989",
      "journal-title": "J. Bacteriol."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib18",
      "doi-asserted-by": "crossref",
      "first-page": "4762",
      "DOI": "10.1073/pnas.84.14.4762",
      "article-title": "Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli",
      "volume": "84",
      "author": "Hui",
      "year": "1987",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "3892",
      "DOI": "10.1002/j.1460-2075.1994.tb06700.x",
      "article-title": "Footprinting mRNA-ribosome complexes with chemical probes",
      "volume": "13",
      "author": "Huttenhofer",
      "year": "1994",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib20",
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      "first-page": "4757",
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      "article-title": "A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins",
      "volume": "84",
      "author": "Jacob",
      "year": "1987",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib21",
      "doi-asserted-by": "crossref",
      "first-page": "120",
      "DOI": "10.1126/science.1105639",
      "article-title": "Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding",
      "volume": "308",
      "author": "Jenner",
      "year": "2005",
      "journal-title": "Science"
    },
    {
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      "first-page": "795",
      "DOI": "10.1107/S0021889893005588",
      "article-title": "Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants",
      "volume": "26",
      "author": "Kabsch",
      "year": "1993",
      "journal-title": "J.\u00a0Appl. Cryst."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib23",
      "doi-asserted-by": "crossref",
      "first-page": "601",
      "DOI": "10.1016/S1097-2765(00)80353-6",
      "article-title": "Novel roles for classical factors at the interface between translation termination and initiation",
      "volume": "3",
      "author": "Karimi",
      "year": "1999",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "1137",
      "DOI": "10.1017/S1355838202029990",
      "article-title": "Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation",
      "volume": "8",
      "author": "Komarova",
      "year": "2002",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib25",
      "first-page": "772",
      "article-title": "From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors",
      "volume": "1",
      "author": "La Teana",
      "year": "1995",
      "journal-title": "RNA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib26",
      "doi-asserted-by": "crossref",
      "first-page": "101",
      "DOI": "10.1128/MMBR.69.1.101-123.2005",
      "article-title": "Initiation of protein synthesis in bacteria",
      "volume": "69",
      "author": "Laursen",
      "year": "2005",
      "journal-title": "Microbiol. Mol. Biol. Rev."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib27",
      "series-title": "Molecular Modeling of Nucleic Acids",
      "first-page": "379",
      "article-title": "Modeling unusual nucleic acid structures",
      "author": "Macke",
      "year": "1998"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib28",
      "doi-asserted-by": "crossref",
      "first-page": "402",
      "DOI": "10.1016/0168-9525(94)90057-4",
      "article-title": "Prokaryotic translation: the interactive pathway leading to initiation",
      "volume": "10",
      "author": "McCarthy",
      "year": "1994",
      "journal-title": "Trends Genet."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib29",
      "doi-asserted-by": "crossref",
      "first-page": "259",
      "DOI": "10.1016/S0968-0004(03)00066-5",
      "article-title": "Insights into the decoding mechanism from recent ribosome structures",
      "volume": "28",
      "author": "Ogle",
      "year": "2003",
      "journal-title": "Trends Biochem. Sci."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib30",
      "doi-asserted-by": "crossref",
      "first-page": "4560",
      "DOI": "10.1093/emboj/20.16.4560",
      "article-title": "Translation initiation factor IF3: two domains, five functions, one mechanism?",
      "volume": "20",
      "author": "Petrelli",
      "year": "2001",
      "journal-title": "EMBO J."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib31",
      "doi-asserted-by": "crossref",
      "first-page": "10254",
      "DOI": "10.1021/bi00089a048",
      "article-title": "Nature of the ribosomal mRNA track: analysis of ribosome-binding sites containing different sequences and secondary structures",
      "volume": "32",
      "author": "Ringquist",
      "year": "1993",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib32",
      "series-title": "Laboratory Manual and Handbook for Escherichia coli and Related Bacteria",
      "first-page": "17.19",
      "article-title": "Compilation of E. coli ribosome binding sites",
      "author": "Rudd",
      "year": "1992"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib33",
      "doi-asserted-by": "crossref",
      "first-page": "595",
      "DOI": "10.1006/jmbi.1995.0321",
      "article-title": "Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence",
      "volume": "249",
      "author": "Schindelin",
      "year": "1995",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib34",
      "doi-asserted-by": "crossref",
      "first-page": "615",
      "DOI": "10.1016/S0092-8674(00)00084-2",
      "article-title": "Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution",
      "volume": "102",
      "author": "Schluenzen",
      "year": "2000",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib35",
      "doi-asserted-by": "crossref",
      "first-page": "827",
      "DOI": "10.1126/science.1117230",
      "article-title": "Structures of the bacterial ribosome at 3.5 \u00c5 resolution",
      "volume": "310",
      "author": "Schuwirth",
      "year": "2005",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib36",
      "doi-asserted-by": "crossref",
      "first-page": "1935",
      "DOI": "10.1126/science.1131127",
      "article-title": "Structure of the 70S ribosome complexed with mRNA and tRNA",
      "volume": "313",
      "author": "Selmer",
      "year": "2006",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib37",
      "doi-asserted-by": "crossref",
      "first-page": "319",
      "DOI": "10.1016/j.molcel.2005.03.028",
      "article-title": "Interaction of Era with the 30S ribosomal subunit: implications for 30S subunit assembly",
      "volume": "18",
      "author": "Sharma",
      "year": "2005",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib38",
      "doi-asserted-by": "crossref",
      "first-page": "1342",
      "DOI": "10.1073/pnas.71.4.1342",
      "article-title": "The 3\u2032-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites",
      "volume": "71",
      "author": "Shine",
      "year": "1974",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib39",
      "doi-asserted-by": "crossref",
      "first-page": "4734",
      "DOI": "10.1073/pnas.72.12.4734",
      "article-title": "How ribosomes select initiator regions in mRNA: base pair formation between the 3\u2032 terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli",
      "volume": "72",
      "author": "Steitz",
      "year": "1975",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib40",
      "doi-asserted-by": "crossref",
      "first-page": "105",
      "DOI": "10.1016/j.molcel.2006.02.014",
      "article-title": "Unfolding of mRNA secondary structure by the bacterial translation initiation complex",
      "volume": "22",
      "author": "Studer",
      "year": "2006",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib41",
      "series-title": "Translational Control",
      "first-page": "759",
      "article-title": "Control of Translation Initiation in Prokaryotes",
      "author": "Voorma",
      "year": "1996"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib42",
      "doi-asserted-by": "crossref",
      "first-page": "1215",
      "DOI": "10.1016/S0021-9258(19)68177-9",
      "article-title": "The binding of fluorescein-labeled protein synthesis initiation factor 2 to Escherichia coli 30 S ribosomal subunits determined by fluorescence polarization",
      "volume": "257",
      "author": "Weiel",
      "year": "1982",
      "journal-title": "J. Biol. Chem."
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib43",
      "doi-asserted-by": "crossref",
      "first-page": "327",
      "DOI": "10.1038/35030006",
      "article-title": "Structure of the 30S ribosomal subunit",
      "volume": "407",
      "author": "Wimberly",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib44",
      "doi-asserted-by": "crossref",
      "first-page": "690",
      "DOI": "10.1021/bi00272a025",
      "article-title": "Effect of Escherichia coli initiation factors on the kinetics of N-Acphe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study",
      "volume": "22",
      "author": "Wintermeyer",
      "year": "1983",
      "journal-title": "Biochemistry"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib45",
      "doi-asserted-by": "crossref",
      "first-page": "233",
      "DOI": "10.1016/S0092-8674(01)00435-4",
      "article-title": "The path of messenger RNA through the ribosome",
      "volume": "106",
      "author": "Yusupova",
      "year": "2001",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.str.2006.12.008_bib46",
      "doi-asserted-by": "crossref",
      "first-page": "391",
      "DOI": "10.1038/nature05281",
      "article-title": "Structural basis for messenger RNA movement on the ribosome",
      "volume": "444",
      "author": "Yusupova",
      "year": "2006",
      "journal-title": "Nature"
    }
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