DOI: 10.1016/j.str.2006.08.004. Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles

Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles

10.1016/j.str.2006.08.004

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

LankaÅ¡, F., Lavery, R., & Maddocks, J. H. (2006). Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles. Structure, 14(10), 1527â1534.

Authors 3

Filip Lankaš (first)
Richard Lavery (additional)
John H. Maddocks (additional)

References 35 Referenced 158

10.1073/pnas.95.24.14152 / Proc. Natl. Acad. Sci. USA / Stretched and overwound DNA forms a Pauling-like structure with exposed bases by Allemand (1998)
10.1016/j.jmb.2005.04.035 / J. Mol. Biol. / Bacterial repression loops require enhanced DNA flexibility by Becker (2005)
10.1063/1.448118 / J. Chem. Phys. / Molecular dynamics with coupling to an external bath by Berendsen (1984)
10.1529/biophysj.104.045252 / Biophys. J. / Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps by Beveridge (2004)
10.1080/07391102.2005.10507034 / J. Biomol. Struct. Dyn. / Molecular dynamics simulations of a nucleosome and free DNA by Bishop (2005)
10.1126/science.8079175 / Science / Entropic elasticity of lambda-phage DNA by Bustamante (1994)
{'key': '10.1016/j.str.2006.08.004_bib7', 'series-title': 'AMBER 7', 'author': 'Case', 'year': '2002'} / AMBER 7 by Case (2002)
10.1016/S1097-2765(04)00210-2 / Mol. Cell / Spontaneous sharp bending of double-stranded DNA by Cloutier (2004)
10.1073/pnas.0409059102 / Proc. Natl. Acad. Sci. USA / DNA twisting flexibility and the formation of sharply looped protein-DNA complexes by Cloutier (2005)
10.1126/science.271.5250.792 / Science / DNA: an extensible molecule by Cluzel (1996)
10.1021/ja00124a002 / J. Am. Chem. Soc. / A second generation force field for the simulation of proteins, nucleic acids and organic molecules by Cornell (1995)
10.1038/255530a0 / Nature / Kinky helix by Crick (1975)
10.1529/biophysj.105.067397 / Biophys. J. / Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps by Dixit (2005)
{'key': '10.1016/j.str.2006.08.004_bib14', 'series-title': 'Theory of Polymer Dynamics', 'author': 'Doi', 'year': '1985'} / Theory of Polymer Dynamics by Doi (1985)
10.1002/j.1460-2075.1985.tb03734.x / EMBO J. / Negative supercoiling induces spontaneous unwinding of a bacterial promoter by Drew (1985)
10.1073/pnas.0500983102 / Proc. Natl. Acad. Sci. USA / Cyclization of short DNA fragments and bending fluctuations of the double helix by Du (2005)
10.1021/ja00392a016 / J. Am. Chem. Soc. / Transferrable intermolecular potential functions for water, alcohols and ethers. Application to liquid water by Jorgensen (1981)
10.1002/recl.19490681203 / Recl. Trav. Chim. Pays Bas / Rontgenuntersuchung geloster fadenmolekule by Kratky (1949)
10.1080/07391102.1988.10506483 / J. Biomol. Struct. Dyn. / The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids by Lavery (1988)
10.1080/07391102.1989.10507728 / J. Biomol. Struct. Dyn. / Defining the structure of irregular nucleic acids: conventions and principles by Lavery (1989)
10.1016/0010-4655(95)00046-I / Comput. Phys. Commun. / JUMNA (junction minimization of nucleic acids) by Lavery (1995)
10.1063/1.472373 / J. Chem. Phys. / A continuum rod model of sequence-dependent DNA structure by Manning (1996)
10.1016/j.jmb.2004.07.075 / J. Mol. Biol. / Stacked-unstacked equilibrium at the nick site of DNA by Protozanova (2004)
10.1038/nature01595 / Nature / The structure of DNA in the nucleosome core by Richmond (2003)
10.1093/nar/24.9.1632 / Nucleic Acids Res. / Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature by Sanghani (1996)
10.1021/ma00134a028 / Macromolecules / Ring-closure probabilites for twisted wormlike chains. Application to DNA by Shimada (1984)
10.1126/science.271.5250.795 / Science / Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules by Smith (1996)
10.1126/science.271.5257.1835 / Science / The elasticity of a single supercoiled DNA molecule by Strick (1996)
10.1016/j.cub.2005.05.007 / Curr. Biol. / DNA dynamics: bubble ‘n’ flip for DNA cyclisation? by Travers (2005)
10.1016/j.gde.2005.02.005 / Curr. Opin. Genet. Dev. / DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise by Vilar (2005)
10.1021/ma00098a016 / Macromolecules / DNA extension under the action of an external force by Vologodskii (1994)
10.1103/PhysRevE.71.021909 / Phys. Rev. E Stat. Nonlin. Soft Matter Phys. / Exact theory of kinkable elastic polymers by Wiggins (2005)
10.1103/PhysRevLett.93.108108 / Phys. Rev. Lett. / Localized single-stranded bubble mechanism for cyclization of short double helix DNA by Yan (2004)
10.1103/PhysRevE.71.061905 / Phys. Rev. E Stat. Nonlin. Soft Matter Phys. / Statistics of loop formation along double helix DNAs by Yan (2005)
10.1016/S0006-3495(03)74838-3 / Biophys. J. / Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization by Zhang (2003)

Dates

Type	When
Created	18 years, 10 months ago (Oct. 11, 2006, 7:38 a.m.)
Deposited	1 year, 6 months ago (Feb. 10, 2024, 11:56 a.m.)
Indexed	3 weeks, 2 days ago (Aug. 6, 2025, 7:59 a.m.)
Issued	18 years, 10 months ago (Oct. 1, 2006)
Published	18 years, 10 months ago (Oct. 1, 2006)
Published Print	18 years, 10 months ago (Oct. 1, 2006)

Funders 0

None

BibTeX

@article{Lanka__2006, title={Kinking Occurs during Molecular Dynamics Simulations of Small DNA Minicircles}, volume={14}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2006.08.004}, DOI={10.1016/j.str.2006.08.004}, number={10}, journal={Structure}, publisher={Elsevier BV}, author={Lankaš, Filip and Lavery, Richard and Maddocks, John H.}, year={2006}, month=oct, pages={1527–1534} }

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      "volume": "87",
      "author": "Beveridge",
      "year": "2004",
      "journal-title": "Biophys. J."
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      "first-page": "5179",
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      "article-title": "A second generation force field for the simulation of proteins, nucleic acids and organic molecules",
      "volume": "117",
      "author": "Cornell",
      "year": "1995",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "10.1016/j.str.2006.08.004_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "530",
      "DOI": "10.1038/255530a0",
      "article-title": "Kinky helix",
      "volume": "255",
      "author": "Crick",
      "year": "1975",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2006.08.004_bib13",
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      "first-page": "3721",
      "DOI": "10.1529/biophysj.105.067397",
      "article-title": "Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps",
      "volume": "89",
      "author": "Dixit",
      "year": "2005",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.str.2006.08.004_bib14",
      "series-title": "Theory of Polymer Dynamics",
      "author": "Doi",
      "year": "1985"
    },
    {
      "key": "10.1016/j.str.2006.08.004_bib15",
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      "volume": "4",
      "author": "Drew",
      "year": "1985",
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      "volume": "102",
      "author": "Du",
      "year": "2005",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
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      "first-page": "335",
      "DOI": "10.1021/ja00392a016",
      "article-title": "Transferrable intermolecular potential functions for water, alcohols and ethers. Application to liquid water",
      "volume": "103",
      "author": "Jorgensen",
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      "volume": "68",
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      "year": "1949",
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      "doi-asserted-by": "crossref",
      "first-page": "63",
      "DOI": "10.1080/07391102.1988.10506483",
      "article-title": "The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids",
      "volume": "6",
      "author": "Lavery",
      "year": "1988",
      "journal-title": "J. Biomol. Struct. Dyn."
    },
    {
      "key": "10.1016/j.str.2006.08.004_bib20",
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      "first-page": "655",
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      "article-title": "Defining the structure of irregular nucleic acids: conventions and principles",
      "volume": "6",
      "author": "Lavery",
      "year": "1989",
      "journal-title": "J. Biomol. Struct. Dyn."
    },
    {
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      "first-page": "135",
      "DOI": "10.1016/0010-4655(95)00046-I",
      "article-title": "JUMNA (junction minimization of nucleic acids)",
      "volume": "91",
      "author": "Lavery",
      "year": "1995",
      "journal-title": "Comput. Phys. Commun."
    },
    {
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      "first-page": "5626",
      "DOI": "10.1063/1.472373",
      "article-title": "A continuum rod model of sequence-dependent DNA structure",
      "volume": "105",
      "author": "Manning",
      "year": "1996",
      "journal-title": "J. Chem. Phys."
    },
    {
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      "first-page": "775",
      "DOI": "10.1016/j.jmb.2004.07.075",
      "article-title": "Stacked-unstacked equilibrium at the nick site of DNA",
      "volume": "342",
      "author": "Protozanova",
      "year": "2004",
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    {
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      "first-page": "145",
      "DOI": "10.1038/nature01595",
      "article-title": "The structure of DNA in the nucleosome core",
      "volume": "423",
      "author": "Richmond",
      "year": "2003",
      "journal-title": "Nature"
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      "first-page": "1632",
      "DOI": "10.1093/nar/24.9.1632",
      "article-title": "Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature",
      "volume": "24",
      "author": "Sanghani",
      "year": "1996",
      "journal-title": "Nucleic Acids Res."
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      "first-page": "689",
      "DOI": "10.1021/ma00134a028",
      "article-title": "Ring-closure probabilites for twisted wormlike chains. Application to DNA",
      "volume": "17",
      "author": "Shimada",
      "year": "1984",
      "journal-title": "Macromolecules"
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      "first-page": "795",
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      "volume": "271",
      "author": "Smith",
      "year": "1996",
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      "first-page": "1835",
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      "article-title": "The elasticity of a single supercoiled DNA molecule",
      "volume": "271",
      "author": "Strick",
      "year": "1996",
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      "first-page": "R377",
      "DOI": "10.1016/j.cub.2005.05.007",
      "article-title": "DNA dynamics: bubble \u2018n\u2019 flip for DNA cyclisation?",
      "volume": "15",
      "author": "Travers",
      "year": "2005",
      "journal-title": "Curr. Biol."
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      "first-page": "136",
      "DOI": "10.1016/j.gde.2005.02.005",
      "article-title": "DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise",
      "volume": "15",
      "author": "Vilar",
      "year": "2005",
      "journal-title": "Curr. Opin. Genet. Dev."
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      "first-page": "5623",
      "DOI": "10.1021/ma00098a016",
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      "volume": "27",
      "author": "Vologodskii",
      "year": "1994",
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      "first-page": "021909",
      "DOI": "10.1103/PhysRevE.71.021909",
      "article-title": "Exact theory of kinkable elastic polymers",
      "volume": "71",
      "author": "Wiggins",
      "year": "2005",
      "journal-title": "Phys. Rev. E Stat. Nonlin. Soft Matter Phys."
    },
    {
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