Crossref journal-article
Elsevier BV
Structure (78)
Bibliography

Huiskonen, J. T., de Haas, F., Bubeck, D., Bamford, D. H., Fuller, S. D., & Butcher, S. J. (2006). Structure of the Bacteriophage ϕ6 Nucleocapsid Suggests a Mechanism for Sequential RNA Packaging. Structure, 14(6), 1039–1048.

Authors 6
  1. Juha T. Huiskonen (first)
  2. Felix de Haas (additional)
  3. Doryen Bubeck (additional)
  4. Dennis H. Bamford (additional)
  5. Stephen D. Fuller (additional)
  6. Sarah J. Butcher (additional)
References 64 Referenced 106
  1. 10.1038/308032a0 / Nature / Cryo-electron microscopy of viruses by Adrian (1984)
  2. 10.1006/jsbi.1996.0020 / J. Struct. Biol. / A model-based approach for determining orientations of biological macromolecules imaged by cryo-electron microscopy by Baker (1996)
  3. 10.1002/j.1460-2075.1987.tb02388.x / EMBO J. / Membrane fusion in prokaryotes: bacteriophage ϕ6 membrane fuses with the Pseudomonas syringae outer membrane by Bamford (1987)
  4. {'key': '10.1016/j.str.2006.03.018_bib4', 'series-title': 'Microbial Gene Techniques', 'first-page': '455', 'article-title': 'Isolation, purification and function of assembly intermediates and subviral particles of bacteriophages PRD1 and ϕ6', 'author': 'Bamford', 'year': '1995'} / Microbial Gene Techniques / Isolation, purification and function of assembly intermediates and subviral particles of bacteriophages PRD1 and ϕ6 by Bamford (1995)
  5. 10.1006/jmbi.1993.1164 / J. Mol. Biol. / Structural studies of the enveloped dsRNA bacteriophage ϕ6 of Pseudomonas syringae by Raman spectroscopy. II. Nucleocapsid structure and thermostability of the virion, nucleocapsid and polymerase complex by Bamford (1993)
  6. 10.1006/jsbi.1997.3896 / J. Struct. Biol. / A method for establishing the handedness of biological macromolecules by Belnap (1997)
  7. 10.1093/emboj/16.14.4477 / EMBO J. / Intermediates in the assembly pathway of the double-stranded RNA virus ϕ6 by Butcher (1997)
  8. 10.1038/35065653 / Nature / A mechanism for initiating RNA-dependent RNA polymerization by Butcher (2001)
  9. 10.1101/SQB.1962.027.001.005 / Cold Spring Harb. Symp. Quant. Biol. / Physical principles in the construction of regular viruses by Caspar (1962)
  10. 10.1006/jmbi.2002.5438 / J. Mol. Biol. / Multi-resolution contour-based fitting of macromolecular structures by Chacon (2002)
  11. 10.1098/rstb.1971.0054 / Philos. Trans. R. Soc. Lond. B Biol. Sci. / Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs by Crowther (1971)
  12. 10.1002/1097-0134(20000815)40:3<502::AID-PROT170>3.0.CO;2-Q / Proteins / Application of multiple sequence alignment profiles to improve protein secondary structure prediction by Cuff (2000)
  13. 10.1016/0042-6822(80)90196-8 / Virology / The molecular weight of bacteriophage ϕ6 and its nucleocapsid by Day (1980)
  14. 10.1006/jmbi.1999.3260 / J. Mol. Biol. / A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage ϕ6 by de Haas (1999)
  15. 10.1083/jcb.122.5.1023 / J. Cell Biol. / Early steps in reovirus infection are associated with dramatic changes in supramolecular structure and protein conformation: analysis of virions and subviral particles by cryoelectron microscopy and image reconstruction by Dryden (1993)
  16. 10.1006/jsbi.1996.0009 / J. Struct. Biol. / Three-dimensional reconstruction of icosahedral particles—the uncommon line by Fuller (1996)
  17. 10.1016/0042-6822(88)90245-0 / Virology / Nucleotide sequence of the middle dsRNA segment of bacteriophage ϕ6: placement of the genes of membrane-associated proteins by Gottlieb (1988)
  18. 10.1016/S0092-8674(00)80758-8 / Cell / The highly ordered double-stranded RNA genome of bluetongue virus revealed by crystallography by Gouet (1999)
  19. 10.1038/26694 / Nature / The atomic structure of the bluetongue virus core by Grimes (1998)
  20. {'key': '10.1016/j.str.2006.03.018_bib20', 'first-page': '146', 'article-title': 'Similarity measures between images. Exact filters for general geometry of 3D reconstructions', 'volume': '73', 'author': 'Harauz', 'year': '1986', 'journal-title': 'Optik'} / Optik / Similarity measures between images. Exact filters for general geometry of 3D reconstructions by Harauz (1986)
  21. 10.1006/jsbi.2001.4339 / J. Struct. Biol. / Bsoft: image and molecular processing in electron microscopy by Heymann (2001)
  22. Huang, C.C., Couch, G.S., Pettersen, E.F., and Ferrin, T.E. (1996). Chimera: an extensible molecular modeling application constructed using standard components. Pacific Symposium on Biocomputing 1, 724.
  23. 10.1038/nsmb807 / Nat. Struct. Mol. Biol. / The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes by Huiskonen (2004)
  24. 10.1107/S0021889803001857 / J. Appl. Crystallogr. / Locating the minor components of double-stranded RNA bacteriophage ϕ6 by neutron scattering by Ikonen (2003)
  25. Ji, Y., Marinescu, D.C., Zhang, W., and Baker, T.S. (2003). Orientation refinement of virus structures with unknown symmetry. Paper presented at: Proc. 17th Ann. Int'l. Parallel & Distrib. Process. Symp. (Nice, France, IEEE Press).
  26. 10.1006/jmbi.2001.4633 / J. Mol. Biol. / Bridging the information gap: computational tools for intermediate resolution structure interpretation by Jiang (2001)
  27. 10.1006/jmbi.1995.0317 / J. Mol. Biol. / RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage ϕ6 by Juuti (1995)
  28. 10.1006/jmbi.1996.0817 / J. Mol. Biol. / Protein P7 of phage ϕ6 RNA polymerase complex, acquiring of RNA packaging activity by in vitro assembly of the purified protein onto deficient particles by Juuti (1997)
  29. 10.1006/jmbi.1998.1772 / J. Mol. Biol. / Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage ϕ6 by Juuti (1998)
  30. 10.1016/0042-6822(92)90901-Z / Virology / Bacteriophage ϕ6 envelope elucidated by chemical cross-linking, immunodetection, and cryoelectron microscopy by Kenney (1992)
  31. 10.1006/jsbi.2000.4279 / J. Struct. Biol. / Local average intensity-based method for identifying spherical particles in electron micrographs by Kivioja (2000)
  32. 10.1038/nsmb927 / Nat. Struct. Mol. Biol. / Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states by Lísal (2005)
  33. 10.1016/j.virol.2006.03.025 / Virology / Interaction of packaging motor with the polymerase complex of dsRNA bacteriophage by Lísal (2006)
  34. 10.1016/S0079-6700(96)00016-0 / Prog. Polym. Sci. / Condensed phases of DNA: structures and phase transitions by Livolant (1996)
  35. 10.1006/jsbi.1999.4174 / J. Struct. Biol. / EMAN: semiautomated software for high-resolution single-particle reconstructions by Ludtke (1999)
  36. 10.1093/emboj/19.1.124 / EMBO J. / Replicase activity of purified recombinant protein P2 of double-stranded RNA bacteriophage ϕ6 by Makeyev (2000)
  37. 10.1016/j.cell.2004.09.007 / Cell / Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation by Mancini (2004)
  38. 10.1002/cpe.592 / Concurr. Computat.: Pract. Exper. / Space-time tradeoffs for parallel 3D reconstruction algorithms for atomic virus structure determination by Marinescu (2001)
  39. 10.1016/j.virusres.2003.12.002 / Virus Res. / The dsRNA viruses by Mertens (2004)
  40. 10.1002/j.1460-2075.1991.tb04874.x / EMBO J. / The three-dimensional structure of reovirus obtained by cryo-electron microscopy by Metcalf (1991)
  41. 10.1016/S1047-8477(03)00069-8 / J. Struct. Biol. / Accurate determination of local defocus and specimen tilt in electron microscopy by Mindell (2003)
  42. 10.1016/j.virusres.2003.12.008 / Virus Res. / Packaging, replication and recombination of the segmented genome of bacteriophage ϕ6 and its relatives by Mindich (2004)
  43. 10.1038/nsb844 / Nat. Struct. Biol. / L-A virus at 3.4 Å resolution reveals particle architecture and mRNA decapping mechanism by Naitow (2002)
  44. 10.1016/j.str.2003.08.012 / Structure / The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins by Nakagawa (2003)
  45. 10.1128/JVI.74.14.6546-6555.2000 / J. Virol. / Trypsin-induced structural transformation in aquareovirus by Nason (2000)
  46. 10.1006/jmbi.2000.4042 / J. Mol. Biol. / T-Coffee: a novel method for fast and accurate multiple sequence alignment by Notredame (2000)
  47. 10.1073/pnas.87.23.9173 / Proc. Natl. Acad. Sci. USA / In vitro assembly of infectious nucleocapsids of bacteriophage ϕ 6: formation of a recombinant double-stranded RNA virus by Olkkonen (1990)
  48. 10.1128/JVI.76.20.10122-10127.2002 / J. Virol. / Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage ϕ6 is required for single-stranded RNA packaging and transcription by Pirttimaa (2002)
  49. 10.1016/j.virusres.2003.12.009 / Virus Res. / Self-assembly of double-stranded RNA bacteriophages by Poranen (2004)
  50. 10.1083/jcb.147.3.671 / J. Cell Biol. / A novel virus-host cell membrane interaction. Membrane voltage-dependent endocytic-like entry of bacteriophage ϕ6 nucleocapsid by Poranen (1999)
  51. 10.1016/S1097-2765(01)00228-3 / Mol. Cell / Self assembly of a viral molecular machine from purified protein and RNA constituents by Poranen (2001)
  52. 10.1038/382471a0 / Nature / Visualization of ordered genomic RNA and localization of transcriptional complexes in rotavirus by Prasad (1996)
  53. 10.1073/pnas.94.8.4074 / Proc. Natl. Acad. Sci. USA / Stoichiometric packaging of the three genomic segments of double-stranded RNA bacteriophage ϕ6 by Qiao (1997)
  54. 10.1128/JB.185.21.6409-6414.2003 / J. Bacteriol. / Analysis of specific binding involved in genomic packaging of the double-stranded-RNA bacteriophage ϕ6 by Qiao (2003)
  55. 10.1038/35010041 / Nature / Structure of the reovirus core at 3.6 Å resolution by Reinisch (2000)
  56. 10.1099/0022-1317-66-11-2461 / J. Gen. Virol. / Function of pili in bacteriophage ϕ6 penetration by Romantschuk (1985)
  57. 10.1002/j.1460-2075.1988.tb03014.x / EMBO J. / The nucleocapsid of bacteriophage ϕ6 penetrates the host cytoplasmic membrane by Romantschuk (1988)
  58. 10.1016/S0969-2126(96)00102-5 / Structure / The structure of aquareovirus shows how the different geometries of the two layers of the capsid are reconciled to provide symmetrical interactions and stabilization by Shaw (1996)
  59. 10.1128/jvi.16.3.685-695.1975 / J. Virol. / Proteins of bacteriophage ϕ6 by Sinclair (1975)
  60. 10.1016/0042-6822(83)90158-7 / Virology / The structure of bacteriophage ϕ6: protease digestion of ϕ6 virions by Stitt (1983)
  61. 10.1128/jvi.18.2.652-658.1976 / J. Virol. / Comparative properties of bacteriophage ϕ6 and ϕ6 nucleocapsid by van Etten (1976)
  62. 10.1128/jvi.11.5.799-805.1973 / J. Virol. / Bacteriophage ϕ6: a lipid-containing virus of Pseudomonas phaseolicola by Vidaver (1973)
  63. 10.1038/nsb1009 / Nat. Struct. Biol. / Reovirus polymerase lambda 3 localized by cryo-electron microscopy of virions at a resolution of 7.6 Å by Zhang (2003)
  64. 10.1016/S0969-2126(03)00091-1 / Structure / Cytoplasmic polyhedrosis virus structure at 8 Å by electron cryomicroscopy: structural basis of capsid stability and mRNA processing regulation by Zhou (2003)
Dates
Type When
Created 19 years, 2 months ago (June 14, 2006, 9:33 a.m.)
Deposited 1 year, 6 months ago (Feb. 10, 2024, 11:56 a.m.)
Indexed 1 month, 1 week ago (July 28, 2025, 5:11 p.m.)
Issued 19 years, 3 months ago (June 1, 2006)
Published 19 years, 3 months ago (June 1, 2006)
Published Print 19 years, 3 months ago (June 1, 2006)
Funders 0

None

@article{Huiskonen_2006, title={Structure of the Bacteriophage ϕ6 Nucleocapsid Suggests a Mechanism for Sequential RNA Packaging}, volume={14}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2006.03.018}, DOI={10.1016/j.str.2006.03.018}, number={6}, journal={Structure}, publisher={Elsevier BV}, author={Huiskonen, Juha T. and de Haas, Felix and Bubeck, Doryen and Bamford, Dennis H. and Fuller, Stephen D. and Butcher, Sarah J.}, year={2006}, month=jun, pages={1039–1048} }