DOI: 10.1016/j.str.2005.01.013. Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions

Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions

10.1016/j.str.2005.01.013

Crossref journal-article

Elsevier BV

Structure (78)

Bibliography

Alber, F., Kim, M. F., & Sali, A. (2005). Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions. Structure, 13(3), 435â445.

Authors 3

Frank Alber (first)
Michael F. Kim (additional)
Andrej Sali (additional)

References 48 Referenced 24

10.1038/nature01511 / Nature / Mass spectrometry-based proteomics by Aebersold (2003)
{'key': '10.1016/j.str.2005.01.013_bib2', 'series-title': 'Nucleic Acids and Molecular Biology, Volume 15, Practical Bioinformatics', 'first-page': '73', 'article-title': 'Structure determination of macromolecular complexes by experiment and computation', 'author': 'Alber', 'year': '2004'} / Nucleic Acids and Molecular Biology, Volume 15, Practical Bioinformatics / Structure determination of macromolecular complexes by experiment and computation by Alber (2004)
10.1126/science.1092645 / Science / Structure-based assembly of protein complexes in yeast by Aloy (2004)
10.1126/science.289.5481.905 / Science / The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution by Ban (2000)
10.1016/S0962-8924(98)01423-8 / Trends Cell Biol. / Electron tomography of molecules and cells by Baumeister (1999)
10.1126/science.1104808 / Science / Nuclear pore complex structure and dynamics revealed by cryoelectron tomography by Beck (2004)
10.1016/0022-2836(85)90134-2 / J. Mol. Biol. / Calculation of protein conformations by proton-proton distance constraints. A new efficient algorithm by Braun (1985)
10.1038/35030019 / Nature / Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics by Carter (2000)
10.1006/jmbi.2002.5438 / J. Mol. Biol. / Multi-resolution contour-based fitting of macromolecular structures by Chacon (2002)
{'year': '2001', 'series-title': 'Introduction to Algorithms, Second Edition', 'author': 'Corman', 'key': '10.1016/j.str.2005.01.013_bib10'} / Introduction to Algorithms, Second Edition by Corman (2001)
10.1083/jcb.200206106 / J. Cell Biol. / Proteomic analysis of the mammalian nuclear pore complex by Cronshaw (2002)
Davis, F.P. and Sali, A. (2004). PIBASE: a comprehensive database of structurally defined protein domain interfaces. Bioinformatics, in press. (10.1093/bioinformatics/bti277)
10.1016/S0006-3495(77)85536-7 / Biophys. J. / Hydrodynamic theory of swimming of flagellated microorganisms by de la Torre (1977)
10.1073/pnas.0400444101 / Proc. Natl. Acad. Sci. USA / Molecular architecture of the prolate head of bacteriophage T4 by Fokine (2004)
10.1146/annurev.biophys.31.082901.134202 / Annu. Rev. Biophys. Biomol. Struct. / Single-particle imaging of macromolecules by cryo-electron microscopy by Frank (2002)
10.1016/S0092-8674(03)00427-6 / Cell / Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement by Gao (2003)
10.1038/415141a / Nature / Functional organization of the yeast proteome by systematic analysis of protein complexes by Gavin (2002)
10.1002/prot.10384 / Proteins / Protein-protein docking predictions for the CAPRI experiment by Gray (2003)
10.1038/386463a0 / Nature / Structure of 20S proteasome from yeast at 2.4 Å resolution by Groll (1997)
10.1016/S0092-8674(01)00546-3 / Cell / High resolution structure of the large ribosomal subunit from a mesophilic eubacterium by Harms (2001)
10.1038/nature02005 / Nature / Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide by Holmes (2003)
10.1038/nature02026 / Nature / Global analysis of protein localization in budding yeast by Huh (2003)
10.1016/0263-7855(96)00018-5 / J. Mol. Graph. / VMD - Visual Molecular Dynamics by Humphrey (1996)
10.1073/pnas.061034498 / Proc. Natl. Acad. Sci. USA / A comprehensive two-hybrid analysis to explore the yeast protein interactome by Ito (2001)
10.1017/S0033583503003871 / Q. Rev. Biophys. / Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution by Koch (2003)
10.1006/jmbi.2001.5256 / J. Mol. Biol. / Evidence for an internal entropy contribution to phosphoryl transfer: a study of domain closure, backbone flexibility, and the catalytic cycle of cAMP-dependent protein kinase by Li (2002)
10.1006/jmbi.1994.1448 / J. Mol. Biol. / A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit by Malhotra (1994)
10.1126/science.1076184 / Science / Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography by Medalia (2002)
10.1038/nature01512 / Nature / Protein analysis on a proteomic scale by Phizicky (2003)
10.1083/jcb.148.4.635 / J. Cell Biol. / The yeast nuclear pore complex: composition, architecture, and transport mechanism by Rout (2000)
10.1016/j.sbi.2004.04.006 / Curr. Opin. Struct. Biol. / A structural perspective on protein-protein interactions by Russell (2004)
10.1006/jmbi.1993.1626 / J. Mol. Biol. / Comparative protein modelling by satisfaction of spatial restraints by Sali (1993)
10.1038/nature01513 / Nature / From words to literature in structural proteomics by Sali (2003)
10.1038/nature02881 / Nature / Structure of the acrosomal bundle by Schmid (2004)
{'year': '1999', 'series-title': 'Pattern Recognition', 'author': 'Theodoridis', 'key': '10.1016/j.str.2005.01.013_bib35'} / Pattern Recognition by Theodoridis (1999)
10.1016/j.jsb.2004.11.004 / J. Struct. Biol. / Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy by Topf (2005)
10.1021/ja026917a / J. Am. Chem. Soc. / A modular cross-linking approach for exploring protein interactions by Trester-Zedlitz (2003)
10.1016/S0959-440X(00)00249-9 / Curr. Opin. Struct. Biol. / The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo by Truong (2001)
10.1038/35001009 / Nature / A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae by Uetz (2000)
10.1016/S0959-440X(02)00333-0 / Curr. Opin. Struct. Biol. / Computational methods for the prediction of protein interactions by Valencia (2002)
10.1006/jsbi.1998.4074 / J. Struct. Biol. / Quantitative fitting of atomic models into observed densities derived by electron microscopy by Volkmann (1999)
10.1016/0076-6879(91)02020-A / Methods Enzymol. / Systematic mutational analyses of protein-protein interfaces by Wells (1991)
10.1016/S1097-2765(00)80023-4 / Mol. Cell / Three-dimensional architecture of the isolated yeast nuclear pore complex: functional and evolutionary implications by Yang (1998)
10.1038/nature01830 / Nature / Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy by Yonekura (2003)
10.1073/pnas.090099097 / Proc. Natl. Acad. Sci. USA / High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry by Young (2000)
10.1073/pnas.93.9.4020 / Proc. Natl. Acad. Sci. USA / Mapping protein-protein interactions by affinity-directed mass spectrometry by Zhao (1996)
10.1016/S0092-8674(00)81515-9 / Cell / Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution by Zhang (1999)
10.1038/nsb990 / Nat. Struct. Biol. / Visualization of membrane protein domains by cryo-electron microscopy of dengue virus by Zhang (2003)

Dates

Type	When
Created	20 years, 5 months ago (March 11, 2005, 6:20 a.m.)
Deposited	2 years, 6 months ago (Feb. 16, 2023, 4:46 p.m.)
Indexed	11 months ago (Sept. 16, 2024, 2:23 p.m.)
Issued	20 years, 5 months ago (March 1, 2005)
Published	20 years, 5 months ago (March 1, 2005)
Published Print	20 years, 5 months ago (March 1, 2005)

Funders 0

None

BibTeX

@article{Alber_2005, title={Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions}, volume={13}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2005.01.013}, DOI={10.1016/j.str.2005.01.013}, number={3}, journal={Structure}, publisher={Elsevier BV}, author={Alber, Frank and Kim, Michael F. and Sali, Andrej}, year={2005}, month=mar, pages={435–445} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2024,
        9,
        16
      ]
    ],
    "date-time": "2024-09-16T18:23:58Z",
    "timestamp": 1726511038246
  },
  "reference-count": 48,
  "publisher": "Elsevier BV",
  "issue": "3",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    },
    {
      "start": {
        "date-parts": [
          [
            2013,
            7,
            17
          ]
        ],
        "date-time": "2013-07-17T00:00:00Z",
        "timestamp": 1374019200000
      },
      "content-version": "vor",
      "delay-in-days": 3060,
      "URL": "http://www.elsevier.com/open-access/userlicense/1.0/"
    },
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "stm-asf",
      "delay-in-days": 0,
      "URL": "https://doi.org/10.15223/policy-017"
    },
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "stm-asf",
      "delay-in-days": 0,
      "URL": "https://doi.org/10.15223/policy-037"
    },
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "stm-asf",
      "delay-in-days": 0,
      "URL": "https://doi.org/10.15223/policy-012"
    },
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "stm-asf",
      "delay-in-days": 0,
      "URL": "https://doi.org/10.15223/policy-029"
    },
    {
      "start": {
        "date-parts": [
          [
            2005,
            3,
            1
          ]
        ],
        "date-time": "2005-03-01T00:00:00Z",
        "timestamp": 1109635200000
      },
      "content-version": "stm-asf",
      "delay-in-days": 0,
      "URL": "https://doi.org/10.15223/policy-004"
    }
  ],
  "content-domain": {
    "domain": [
      "cell.com",
      "elsevier.com",
      "sciencedirect.com"
    ],
    "crossmark-restriction": true
  },
  "published-print": {
    "date-parts": [
      [
        2005,
        3
      ]
    ]
  },
  "DOI": "10.1016/j.str.2005.01.013",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2005,
        3,
        11
      ]
    ],
    "date-time": "2005-03-11T11:20:28Z",
    "timestamp": 1110540028000
  },
  "page": "435-445",
  "update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy",
  "source": "Crossref",
  "is-referenced-by-count": 24,
  "title": "Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions",
  "prefix": "10.1016",
  "volume": "13",
  "author": [
    {
      "given": "Frank",
      "family": "Alber",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Michael F.",
      "family": "Kim",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Andrej",
      "family": "Sali",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.str.2005.01.013_bib1",
      "doi-asserted-by": "crossref",
      "first-page": "198",
      "DOI": "10.1038/nature01511",
      "article-title": "Mass spectrometry-based proteomics",
      "volume": "422",
      "author": "Aebersold",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib2",
      "series-title": "Nucleic Acids and Molecular Biology, Volume 15, Practical Bioinformatics",
      "first-page": "73",
      "article-title": "Structure determination of macromolecular complexes by experiment and computation",
      "author": "Alber",
      "year": "2004"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib3",
      "doi-asserted-by": "crossref",
      "first-page": "2026",
      "DOI": "10.1126/science.1092645",
      "article-title": "Structure-based assembly of protein complexes in yeast",
      "volume": "303",
      "author": "Aloy",
      "year": "2004",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib4",
      "doi-asserted-by": "crossref",
      "first-page": "905",
      "DOI": "10.1126/science.289.5481.905",
      "article-title": "The complete atomic structure of the large ribosomal subunit at 2.4 \u00c5 resolution",
      "volume": "289",
      "author": "Ban",
      "year": "2000",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib5",
      "doi-asserted-by": "crossref",
      "first-page": "81",
      "DOI": "10.1016/S0962-8924(98)01423-8",
      "article-title": "Electron tomography of molecules and cells",
      "volume": "9",
      "author": "Baumeister",
      "year": "1999",
      "journal-title": "Trends Cell Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib6",
      "doi-asserted-by": "crossref",
      "first-page": "1387",
      "DOI": "10.1126/science.1104808",
      "article-title": "Nuclear pore complex structure and dynamics revealed by cryoelectron tomography",
      "volume": "306",
      "author": "Beck",
      "year": "2004",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib7",
      "doi-asserted-by": "crossref",
      "first-page": "611",
      "DOI": "10.1016/0022-2836(85)90134-2",
      "article-title": "Calculation of protein conformations by proton-proton distance constraints. A new efficient algorithm",
      "volume": "186",
      "author": "Braun",
      "year": "1985",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib8",
      "doi-asserted-by": "crossref",
      "first-page": "340",
      "DOI": "10.1038/35030019",
      "article-title": "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics",
      "volume": "407",
      "author": "Carter",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib9",
      "doi-asserted-by": "crossref",
      "first-page": "375",
      "DOI": "10.1006/jmbi.2002.5438",
      "article-title": "Multi-resolution contour-based fitting of macromolecular structures",
      "volume": "317",
      "author": "Chacon",
      "year": "2002",
      "journal-title": "J. Mol. Biol."
    },
    {
      "year": "2001",
      "series-title": "Introduction to Algorithms, Second Edition",
      "author": "Corman",
      "key": "10.1016/j.str.2005.01.013_bib10"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib11",
      "doi-asserted-by": "crossref",
      "first-page": "915",
      "DOI": "10.1083/jcb.200206106",
      "article-title": "Proteomic analysis of the mammalian nuclear pore complex",
      "volume": "158",
      "author": "Cronshaw",
      "year": "2002",
      "journal-title": "J. Cell Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib12",
      "doi-asserted-by": "crossref",
      "unstructured": "Davis, F.P. and Sali, A. (2004). PIBASE: a comprehensive database of structurally defined protein domain interfaces. Bioinformatics, in press.",
      "DOI": "10.1093/bioinformatics/bti277"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib13",
      "doi-asserted-by": "crossref",
      "first-page": "49",
      "DOI": "10.1016/S0006-3495(77)85536-7",
      "article-title": "Hydrodynamic theory of swimming of flagellated microorganisms",
      "volume": "20",
      "author": "de la Torre",
      "year": "1977",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib14",
      "doi-asserted-by": "crossref",
      "first-page": "6003",
      "DOI": "10.1073/pnas.0400444101",
      "article-title": "Molecular architecture of the prolate head of bacteriophage T4",
      "volume": "101",
      "author": "Fokine",
      "year": "2004",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib15",
      "doi-asserted-by": "crossref",
      "first-page": "303",
      "DOI": "10.1146/annurev.biophys.31.082901.134202",
      "article-title": "Single-particle imaging of macromolecules by cryo-electron microscopy",
      "volume": "31",
      "author": "Frank",
      "year": "2002",
      "journal-title": "Annu. Rev. Biophys. Biomol. Struct."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib16",
      "doi-asserted-by": "crossref",
      "first-page": "789",
      "DOI": "10.1016/S0092-8674(03)00427-6",
      "article-title": "Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement",
      "volume": "113",
      "author": "Gao",
      "year": "2003",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib17",
      "doi-asserted-by": "crossref",
      "first-page": "141",
      "DOI": "10.1038/415141a",
      "article-title": "Functional organization of the yeast proteome by systematic analysis of protein complexes",
      "volume": "415",
      "author": "Gavin",
      "year": "2002",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib18",
      "doi-asserted-by": "crossref",
      "first-page": "118",
      "DOI": "10.1002/prot.10384",
      "article-title": "Protein-protein docking predictions for the CAPRI experiment",
      "volume": "52",
      "author": "Gray",
      "year": "2003",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "463",
      "DOI": "10.1038/386463a0",
      "article-title": "Structure of 20S proteasome from yeast at 2.4 \u00c5 resolution",
      "volume": "386",
      "author": "Groll",
      "year": "1997",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib20",
      "doi-asserted-by": "crossref",
      "first-page": "679",
      "DOI": "10.1016/S0092-8674(01)00546-3",
      "article-title": "High resolution structure of the large ribosomal subunit from a mesophilic eubacterium",
      "volume": "107",
      "author": "Harms",
      "year": "2001",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib21",
      "doi-asserted-by": "crossref",
      "first-page": "423",
      "DOI": "10.1038/nature02005",
      "article-title": "Electron cryo-microscopy shows how strong binding of myosin to actin releases nucleotide",
      "volume": "425",
      "author": "Holmes",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib22",
      "doi-asserted-by": "crossref",
      "first-page": "686",
      "DOI": "10.1038/nature02026",
      "article-title": "Global analysis of protein localization in budding yeast",
      "volume": "425",
      "author": "Huh",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib23",
      "doi-asserted-by": "crossref",
      "first-page": "33",
      "DOI": "10.1016/0263-7855(96)00018-5",
      "article-title": "VMD - Visual Molecular Dynamics",
      "volume": "14",
      "author": "Humphrey",
      "year": "1996",
      "journal-title": "J. Mol. Graph."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "4569",
      "DOI": "10.1073/pnas.061034498",
      "article-title": "A comprehensive two-hybrid analysis to explore the yeast protein interactome",
      "volume": "98",
      "author": "Ito",
      "year": "2001",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib25",
      "doi-asserted-by": "crossref",
      "first-page": "147",
      "DOI": "10.1017/S0033583503003871",
      "article-title": "Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution",
      "volume": "36",
      "author": "Koch",
      "year": "2003",
      "journal-title": "Q. Rev. Biophys."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib26",
      "doi-asserted-by": "crossref",
      "first-page": "459",
      "DOI": "10.1006/jmbi.2001.5256",
      "article-title": "Evidence for an internal entropy contribution to phosphoryl transfer: a study of domain closure, backbone flexibility, and the catalytic cycle of cAMP-dependent protein kinase",
      "volume": "315",
      "author": "Li",
      "year": "2002",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib27",
      "doi-asserted-by": "crossref",
      "first-page": "308",
      "DOI": "10.1006/jmbi.1994.1448",
      "article-title": "A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit",
      "volume": "240",
      "author": "Malhotra",
      "year": "1994",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib28",
      "doi-asserted-by": "crossref",
      "first-page": "1209",
      "DOI": "10.1126/science.1076184",
      "article-title": "Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography",
      "volume": "298",
      "author": "Medalia",
      "year": "2002",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib29",
      "doi-asserted-by": "crossref",
      "first-page": "208",
      "DOI": "10.1038/nature01512",
      "article-title": "Protein analysis on a proteomic scale",
      "volume": "422",
      "author": "Phizicky",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib30",
      "doi-asserted-by": "crossref",
      "first-page": "635",
      "DOI": "10.1083/jcb.148.4.635",
      "article-title": "The yeast nuclear pore complex: composition, architecture, and transport mechanism",
      "volume": "148",
      "author": "Rout",
      "year": "2000",
      "journal-title": "J. Cell Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib31",
      "doi-asserted-by": "crossref",
      "first-page": "313",
      "DOI": "10.1016/j.sbi.2004.04.006",
      "article-title": "A structural perspective on protein-protein interactions",
      "volume": "14",
      "author": "Russell",
      "year": "2004",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib32",
      "doi-asserted-by": "crossref",
      "first-page": "779",
      "DOI": "10.1006/jmbi.1993.1626",
      "article-title": "Comparative protein modelling by satisfaction of spatial restraints",
      "volume": "234",
      "author": "Sali",
      "year": "1993",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib33",
      "doi-asserted-by": "crossref",
      "first-page": "216",
      "DOI": "10.1038/nature01513",
      "article-title": "From words to literature in structural proteomics",
      "volume": "422",
      "author": "Sali",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib34",
      "doi-asserted-by": "crossref",
      "first-page": "104",
      "DOI": "10.1038/nature02881",
      "article-title": "Structure of the acrosomal bundle",
      "volume": "431",
      "author": "Schmid",
      "year": "2004",
      "journal-title": "Nature"
    },
    {
      "year": "1999",
      "series-title": "Pattern Recognition",
      "author": "Theodoridis",
      "key": "10.1016/j.str.2005.01.013_bib35"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib36",
      "doi-asserted-by": "crossref",
      "first-page": "191",
      "DOI": "10.1016/j.jsb.2004.11.004",
      "article-title": "Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy",
      "volume": "149",
      "author": "Topf",
      "year": "2005",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib37",
      "doi-asserted-by": "crossref",
      "first-page": "2416",
      "DOI": "10.1021/ja026917a",
      "article-title": "A modular cross-linking approach for exploring protein interactions",
      "volume": "125",
      "author": "Trester-Zedlitz",
      "year": "2003",
      "journal-title": "J. Am. Chem. Soc."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib38",
      "doi-asserted-by": "crossref",
      "first-page": "573",
      "DOI": "10.1016/S0959-440X(00)00249-9",
      "article-title": "The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo",
      "volume": "11",
      "author": "Truong",
      "year": "2001",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib39",
      "doi-asserted-by": "crossref",
      "first-page": "623",
      "DOI": "10.1038/35001009",
      "article-title": "A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae",
      "volume": "403",
      "author": "Uetz",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib40",
      "doi-asserted-by": "crossref",
      "first-page": "368",
      "DOI": "10.1016/S0959-440X(02)00333-0",
      "article-title": "Computational methods for the prediction of protein interactions",
      "volume": "12",
      "author": "Valencia",
      "year": "2002",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib41",
      "doi-asserted-by": "crossref",
      "first-page": "176",
      "DOI": "10.1006/jsbi.1998.4074",
      "article-title": "Quantitative fitting of atomic models into observed densities derived by electron microscopy",
      "volume": "125",
      "author": "Volkmann",
      "year": "1999",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib42",
      "doi-asserted-by": "crossref",
      "first-page": "390",
      "DOI": "10.1016/0076-6879(91)02020-A",
      "article-title": "Systematic mutational analyses of protein-protein interfaces",
      "volume": "202",
      "author": "Wells",
      "year": "1991",
      "journal-title": "Methods Enzymol."
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib43",
      "doi-asserted-by": "crossref",
      "first-page": "223",
      "DOI": "10.1016/S1097-2765(00)80023-4",
      "article-title": "Three-dimensional architecture of the isolated yeast nuclear pore complex: functional and evolutionary implications",
      "volume": "1",
      "author": "Yang",
      "year": "1998",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib44",
      "doi-asserted-by": "crossref",
      "first-page": "643",
      "DOI": "10.1038/nature01830",
      "article-title": "Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy",
      "volume": "424",
      "author": "Yonekura",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib45",
      "doi-asserted-by": "crossref",
      "first-page": "5802",
      "DOI": "10.1073/pnas.090099097",
      "article-title": "High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry",
      "volume": "97",
      "author": "Young",
      "year": "2000",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib46",
      "doi-asserted-by": "crossref",
      "first-page": "4020",
      "DOI": "10.1073/pnas.93.9.4020",
      "article-title": "Mapping protein-protein interactions by affinity-directed mass spectrometry",
      "volume": "93",
      "author": "Zhao",
      "year": "1996",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib47",
      "doi-asserted-by": "crossref",
      "first-page": "811",
      "DOI": "10.1016/S0092-8674(00)81515-9",
      "article-title": "Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 \u00c5 resolution",
      "volume": "98",
      "author": "Zhang",
      "year": "1999",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.str.2005.01.013_bib48",
      "doi-asserted-by": "crossref",
      "first-page": "907",
      "DOI": "10.1038/nsb990",
      "article-title": "Visualization of membrane protein domains by cryo-electron microscopy of dengue virus",
      "volume": "10",
      "author": "Zhang",
      "year": "2003",
      "journal-title": "Nat. Struct. Biol."
    }
  ],
  "container-title": "Structure",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0969212605000675?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S0969212605000675?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2023,
        2,
        16
      ]
    ],
    "date-time": "2023-02-16T21:46:57Z",
    "timestamp": 1676584017000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S0969212605000675"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2005,
        3
      ]
    ]
  },
  "references-count": 48,
  "journal-issue": {
    "issue": "3",
    "published-print": {
      "date-parts": [
        [
          2005,
          3
        ]
      ]
    }
  },
  "alternative-id": [
    "S0969212605000675"
  ],
  "URL": "http://dx.doi.org/10.1016/j.str.2005.01.013",
  "relation": {},
  "ISSN": [
    "0969-2126"
  ],
  "subject": [],
  "container-title-short": "Structure",
  "published": {
    "date-parts": [
      [
        2005,
        3
      ]
    ]
  },
  "assertion": [
    {
      "value": "Elsevier",
      "name": "publisher",
      "label": "This article is maintained by"
    },
    {
      "value": "Structural Characterization of Assemblies from Overall Shape and Subcomplex Compositions",
      "name": "articletitle",
      "label": "Article Title"
    },
    {
      "value": "Structure",
      "name": "journaltitle",
      "label": "Journal Title"
    },
    {
      "value": "https://doi.org/10.1016/j.str.2005.01.013",
      "name": "articlelink",
      "label": "CrossRef DOI link to publisher maintained version"
    },
    {
      "value": "article",
      "name": "content_type",
      "label": "Content Type"
    },
    {
      "value": "Copyright \u00a9 2005 Elsevier Ltd. All rights reserved.",
      "name": "copyright",
      "label": "Copyright"
    }
  ]
}