Crossref journal-article
Elsevier BV
Structure (78)
Bibliography

Walma, T., Aelen, J., Nabuurs, S. B., Oostendorp, M., van den Berk, L., Hendriks, W., & Vuister, G. W. (2004). A Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL. Structure, 12(1), 11–20.

Authors 7
  1. Tine Walma (first)
  2. Jan Aelen (additional)
  3. Sander B Nabuurs (additional)
  4. Marlies Oostendorp (additional)
  5. Lieke van den Berk (additional)
  6. Wiljan Hendriks (additional)
  7. Geerten W Vuister (additional)
References 46 Referenced 26
  1. 10.1002/prot.340170110 / Proteins / Primary structure effects on peptide group hydrogen exchange by Bai (1993)
  2. 10.1021/bi972127f / Biochemistry / Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase by Banerjee (1998)
  3. 10.1016/S0021-9258(17)31792-1 / J. Biol. Chem. / A novel protein-tyrosine phosphatase with homology to both the cytoskeletal proteins of the band 4.1 family and junction-associated guanylate kinases by Banville (1994)
  4. 10.1007/BF00417486 / J. Biomol. NMR / The program XEASY for computer-supported NMR spectral analysis of biological macromolecules by Bartels (1995)
  5. 10.1074/jbc.C200571200 / J. Biol. Chem. / Novel mode of ligand recognition by the Erbin PDZ domain by Birrane (2003)
  6. {'key': '10.1016/j.str.2003.11.023_BIB6', 'series-title': 'X-PLOR Version 3.851. A System for X-Ray Crystalography and NMR', 'author': 'Brunger', 'year': '1996'} / X-PLOR Version 3.851. A System for X-Ray Crystalography and NMR by Brunger (1996)
  7. 10.1021/ja9812610 / J. Am. Chem. Soc. / Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase by Cornilescu (1998)
  8. 10.1074/jbc.272.48.30215 / J. Biol. Chem. / No evidence for involvement of mouse protein-tyrosine phosphatase-BAS-like Fas-associated phosphatase-1 in Fas-mediated apoptosis by Cuppen (1997)
  9. 10.1091/mbc.9.3.671 / Mol. Biol. Cell / PDZ motifs in PTP-BL and RIL bind to internal protein segments in the LIM domain protein RIL by Cuppen (1998)
  10. 10.1016/S0014-5793(99)01191-6 / FEBS Lett. / Identification and molecular characterization of BP75, a novel bromodomain-containing protein by Cuppen (1999)
  11. 10.1242/jcs.112.19.3299 / J. Cell Sci. / A FERM domain governs apical confinement of PTP-BL in epithelial cells by Cuppen (1999)
  12. 10.1078/S0171-9335(04)70031-X / Eur. J. Cell Biol. / The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL by Cuppen (2000)
  13. 10.1007/BF00197809 / J. Biomol. NMR / NMRPipe by Delaglio (1995)
  14. 10.1023/A:1008305808620 / J. Biomol. NMR / Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data by Dosset (2000)
  15. 10.1023/A:1011206132740 / J. Biomol. NMR / A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings by Dosset (2001)
  16. 10.1139/o98-069 / Biochem. Cell Biol. / Effect of peptide binding on amide proton exchange rates in the PDZ2 domain from human phosphatase hPTP1E by Ekiel (1998)
  17. 10.1038/sj.onc.1203725 / Oncogene / The Adenomatous Polyposis Coli-protein (APC) interacts with the protein tyrosine phosphatase PTP-BL via an alternatively spliced PDZ domain by Erdmann (2000)
  18. 10.1074/jbc.M207206200 / J. Biol. Chem. / PDZ7 of glutamate receptor interacting protein binds to its target via a novel hydrophobic surface area by Feng (2002)
  19. 10.1016/S0014-5793(01)02401-2 / FEBS Lett. / The protein kinase C-related kinase PRK2 interacts with the protein tyrosine phosphatase PTP-BL via a novel PDZ domain binding motif by Gross (2001)
  20. 10.1091/mbc.E02-04-0191 / Mol. Biol. Cell / The protein tyrosine phosphatase PTP-BL associates with the midbody and is involved in the regulation of cytokinesis by Herrmann (2003)
  21. 10.1038/13273 / Nat. Struct. Biol. / Protein conformational stabilities can be determined from hydrogen exchange rates by Huyghues-Despointes (1999)
  22. 10.1016/S0969-2126(03)00052-2 / Structure / PDZ tandem of human syntenin. Crystal structure and functional properties by Kang (2003)
  23. 10.1016/S0022-2836(02)00544-2 / J. Mol. Biol. / Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions by Kozlov (2002)
  24. 10.1007/BF00228148 / J. Biomol. NMR / Aqua and procheck-nmr by Laskowski (1996)
  25. 10.1002/pro.5560070905 / Protein Sci. / Anatomy of protein pockets and cavities by Liang (1998)
  26. 10.1021/jp973084f / J. Phys. Chem. B / All-atom empirical potential for molecular modeling and dynamics studies of proteins by MacKerell (1998)
  27. 10.1042/0264-6021:3370179 / Biochem. J. / Association of protein-tyrosine phosphatase PTP-BAS with the transcription-factor-inhibitory protein IkappaBalpha through interaction between the PDZ1 domain and ankyrin repeats by Maekawa (1999)
  28. 10.1006/jmbi.1994.0073 / J. Mol. Biol. / Backbone dynamics of Escherichia coli ribonuclease HI by Mandel (1995)
  29. 10.1002/pro.5560070416 / Protein Sci. / Solution structure and dynamics of a designed monomeric variant of the lambda Cro repressor by Mossing (1998)
  30. 10.1021/ja035440f / J. Am. Chem. Soc. / Quantitative evaluation of experimental NMR restraints by Nabuurs (2003)
  31. 10.1016/S0960-894X(02)00345-1 / Bioorg. Med. Chem. Lett. / Investigation of the PDZ domain ligand binding site using chemically modified peptides by Novak (2002)
  32. 10.1016/S1097-2765(02)00488-4 / Mol. Cell / EphrinB phosphorylation and reverse signaling by Palmer (2002)
  33. 10.1016/0022-2836(92)91008-D / J. Mol. Biol. / Analysis of insertions/deletions in protein structures by Pascarella (1992)
  34. 10.1016/S0022-2836(02)01326-8 / J. Mol. Biol. / Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase by Ramasubbu (2003)
  35. 10.1016/S0021-9258(19)51050-X / J. Biol. Chem. / Cloning and characterization of PTPL1, a protein tyrosine phosphatase with similarities to cytoskeletal-associated proteins by Saras (1994)
  36. 10.1074/jbc.272.39.24333 / J. Biol. Chem. / A novel GTPase-activating protein for Rho interacts with a PDZ domain of the protein-tyrosine phosphatase PTPL1 by Saras (1997)
  37. 10.1126/science.7536343 / Science / FAP-1 by Sato (1995)
  38. 10.1023/A:1014971029663 / J. Biomol. NMR / Improving the quality of protein structures determined by NMR spectroscopy by Spronk (2002)
  39. 10.1016/S0014-5793(02)02220-2 / FEBS Lett. / PDZ domains by Vaccaro (2002)
  40. 10.1023/A:1023941703493 / Mol. Biol. Rep. / PDZ domains - glue and guide by van Ham (2003)
  41. {'key': '10.1016/j.str.2003.11.023_BIB41', 'first-page': '631', 'article-title': 'Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL', 'volume': '8', 'author': 'van Ham', 'year': '2003', 'journal-title': 'Genomics'} / Genomics / Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL by van Ham (2003)
  42. 10.1002/pro.5560051203 / Protein Sci. / Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme by Vetter (1996)
  43. 10.1016/0263-7855(90)80070-V / J. Mol. Graph. / What if by Vriend (1990)
  44. 10.1006/jmbi.2002.5402 / J. Mol. Biol. / Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL by Walma (2002)
  45. {'key': '10.1016/j.str.2003.11.023_BIB45', 'series-title': 'NMR of Proteins and Nucleic Acids', 'author': 'Wuthrich', 'year': '1986'} / NMR of Proteins and Nucleic Acids by Wuthrich (1986)
  46. {'key': '10.1016/j.str.2003.11.023_BIB46', 'series-title': 'Protein and Peptide Structure and Interactions Studied by Hydrogen Exchange and NMR', 'author': 'Zhang', 'year': '1995'} / Protein and Peptide Structure and Interactions Studied by Hydrogen Exchange and NMR by Zhang (1995)
Dates
Type When
Created 21 years, 2 months ago (June 22, 2004, 1:29 p.m.)
Deposited 4 years, 2 months ago (June 23, 2021, 12:44 p.m.)
Indexed 1 month ago (July 30, 2025, 11:12 a.m.)
Issued 21 years, 6 months ago (March 1, 2004)
Published 21 years, 6 months ago (March 1, 2004)
Published Print 21 years, 6 months ago (March 1, 2004)
Funders 0

None

@article{Walma_2004, title={A Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL}, volume={12}, ISSN={0969-2126}, url={http://dx.doi.org/10.1016/j.str.2003.11.023}, DOI={10.1016/j.str.2003.11.023}, number={1}, journal={Structure}, publisher={Elsevier BV}, author={Walma, Tine and Aelen, Jan and Nabuurs, Sander B and Oostendorp, Marlies and van den Berk, Lieke and Hendriks, Wiljan and Vuister, Geerten W}, year={2004}, month=mar, pages={11–20} }