DOI: 10.1016/j.semcdb.2009.07.004. Tracking in cell and developmental biology

Tracking in cell and developmental biology

10.1016/j.semcdb.2009.07.004

Crossref journal-article

Elsevier BV

Seminars in Cell & Developmental Biology (78)

Bibliography

Meijering, E., Dzyubachyk, O., Smal, I., & van Cappellen, W. A. (2009). Tracking in cell and developmental biology. Seminars in Cell & Developmental Biology, 20(8), 894â902.

Authors 4

Erik Meijering (first)
Oleh Dzyubachyk (additional)
Ihor Smal (additional)
Wiggert A. van Cappellen (additional)

References 100 Referenced 203

10.1109/MEMB.2007.907365 / IEEE Engineering in Medicine and Biology Magazine / The symphony of life: importance, interaction, and visualization of biological rhythms by Moser (2008)
{'key': '10.1016/j.semcdb.2009.07.004_bib2', 'first-page': 'S16', 'article-title': "Imagining imaging's future", 'volume': '5', 'author': 'Tsien', 'year': '2003', 'journal-title': 'Nature Cell Biology'} / Nature Cell Biology / Imagining imaging's future by Tsien (2003)
10.1126/science.1082520 / Science / Development and use of fluorescent protein markers in living cells by Lippincott-Schwartz (2003)
10.1126/science.1124618 / Science / The fluorescent toolbox for assessing protein location and function by Giepmans (2006)
10.1126/science.1082160 / Science / Light microscopy techniques for live cell imaging by Stephens (2003)
{'key': '10.1016/j.semcdb.2009.07.004_bib6', 'series-title': 'Handbook of biological confocal microscopy', 'author': 'Pawley', 'year': '2006'} / Handbook of biological confocal microscopy by Pawley (2006)
10.1038/nmeth.1291 / Nature Methods / Microscopy and its focal switch by Hell (2009)
10.1016/j.copbio.2005.01.003 / Current Opinion in Biotechnology / From micro to nano: recent advances in high-resolution microscopy by Garini (2005)
10.1109/MSP.2006.1628875 / IEEE Signal Processing Magazine / The colored revolution of bioimaging by Vonesch (2006)
10.1126/science.1082602 / Science / Informatics and quantitative analysis in biological imaging by Swedlow (2003)
10.1083/jcb.200302097 / Journal of Cell Biology / Computational imaging in cell biology by Eils (2003)
10.1109/TIP.2005.855701 / IEEE Transactions on Image Processing / Special issue on molecular and cellular bioimaging by Murphy (2005)
10.1038/ncb1496 / Nature Cell Biology / Modelling data across labs, genomes, space and time by Swedlow (2006)
10.1109/MSP.2006.1628879 / IEEE Signal Processing Magazine / Informatics challenges of high-throughput microscopy by Zhou (2006)
10.1038/nrm1979 / Nature Reviews Molecular Cell Biology / High-throughput fluorescence microscopy for systems biology by Pepperkok (2006)
10.1109/JPROC.2007.913556 / Proceedings of the IEEE / State of the art in information extraction and quantitative analysis for multimodality biomolecular imaging by Ahmed (2008)
10.1016/S0091-679X(08)85022-4 / Methods in Cell Biology / Computational processing and analysis of dynamic fluorescence image data by Dorn (2008)
10.1093/bioinformatics/btn346 / Bioinformatics / Bioimage informatics: a new area of engineering biology by Peng (2008)
10.1109/34.824822 / IEEE Transactions on Pattern Analysis and Machine Intelligence / Medical image analysis: progress over two decades and the challenges ahead by Duncan (2000)
{'key': '10.1016/j.semcdb.2009.07.004_bib20', 'series-title': 'Handbook of biomedical image analysis', 'author': 'Suri', 'year': '2005'} / Handbook of biomedical image analysis by Suri (2005)
{'key': '10.1016/j.semcdb.2009.07.004_bib21', 'series-title': 'Handbook of medical image processing and analysis', 'author': 'Bankman', 'year': '2008'} / Handbook of medical image processing and analysis by Bankman (2008)
{'key': '10.1016/j.semcdb.2009.07.004_bib22', 'series-title': 'Microscope image processing', 'author': 'Wu', 'year': '2008'} / Microscope image processing by Wu (2008)
{'key': '10.1016/j.semcdb.2009.07.004_bib23', 'series-title': 'Microscopic image analysis for life science applications', 'author': 'Rittscher', 'year': '2008'} / Microscopic image analysis for life science applications by Rittscher (2008)
10.1109/MSP.2006.1628877 / IEEE Signal Processing Magazine / Tracking in molecular bioimaging by Meijering (2006)
10.1109/MSP.2006.1628878 / IEEE Signal Processing Magazine / On the digital trail of mobile cells by Zimmer (2006)
10.1016/S1046-2023(02)00287-6 / Methods / Quantitative motion analysis and visualization of cellular structures by Gerlich (2003)
10.1007/s00285-008-0180-4 / Journal of Mathematical Biology / Multiple objects tracking in fluorescence microscopy by Kalaidzidis (2009)
10.1038/sj.emboj.7601227 / EMBO Journal / Imaging of cell migration by Dormann (2006)
10.1111/j.1365-2818.2009.03144.x / Journal of Microscopy / Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration by Hand (2009)
{'key': '10.1016/j.semcdb.2009.07.004_bib30', 'series-title': 'Microscope image processing', 'first-page': '401', 'article-title': 'Time-lapse imaging', 'author': 'Meijering', 'year': '2008'} / Microscope image processing / Time-lapse imaging by Meijering (2008)
10.1155/IJBI/2006/12186 / International Journal of Biomedical Imaging / Probabilistic model-based cell tracking by Kachouie (2006)
10.1111/j.0022-2720.2004.01338.x / Journal of Microscopy / Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections by Wählby (2004)
10.1109/TCSI.2006.884469 / IEEE Transactions on Circuits and Systems I: Regular Papers / Nuclei segmentation using marker-controlled watershed, tracking using mean-shift, and Kalman filter in time-lapse microscopy by Yang (2006)
10.1002/cyto.a.20430 / Cytometry Part A / A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images by Lin (2007)
10.1109/TITB.2008.2007098 / IEEE Transactions on Information Technology in Biomedicine / A novel cell segmentation method and cell phase identification using Markov model by Zhou (2009)
10.1109/TMI.2002.806292 / IEEE Transactions on Medical Imaging / Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing by Zimmer (2002)
10.1002/cm.10048 / Cell Motility and the Cytoskeleton / Simultaneous quantification of cell motility and protein-membrane-association using active contours by Dormann (2002)
10.1109/TMI.2002.806291 / IEEE Transactions on Medical Imaging / Tracking leukocytes in vivo with shape and size constrained active contours by Ray (2002)
10.1002/cyto.a.20040 / Cytometry Part A / A model-based approach for automated in vitro cell tracking and chemotaxis analyses by Debeir (2004)
10.1109/TIP.2003.819858 / IEEE Transactions on Medical Imaging / Level set analysis for leukocyte detection and tracking by Mukherjee (2004)
10.1109/TIP.2005.852790 / IEEE Transactions on Image Processing / Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces by Dufour (2005)
10.1016/j.chemolab.2005.07.007 / Chemometrics and Intelligent Laboratory Systems / Automatic tracking of biological cells and compartments using particle filters and active contours by Shen (2006)
10.1016/j.patrec.2007.05.008 / Pattern Recognition Letters / Segmentation of heterogeneous blob objects through voting and level set formulation by Chang (2007)
10.1016/j.media.2008.06.001 / Medical Image Analysis / Cell population tracking and lineage construction with spatiotemporal context by Li (2008)
10.1111/j.1365-2818.2008.03108.x / Journal of Microscopy / An automatic system for in vitro cell migration studies by Degerman (2009)
10.1016/j.media.2008.06.018 / Medical Image Analysis / Spatio-temporal cell cycle phase analysis using level sets and fast marching methods by Padfield (2009)
10.1109/TMI.2005.846851 / IEEE Transactions on Medical Imaging / Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes by Debeir (2005)
10.1016/j.jim.2008.09.024 / Journal of Immunological Methods / Automated 5-D analysis of cell migration and interaction in the thymic cortex from time-lapse sequences of 3-D multi-channel multi-photon images by Chen (2009)
10.1109/TIP.2006.873434 / IEEE Transactions on Image Processing / A correlation-based approach to calculate rotation and translation of moving cells by Wilson (2006)
10.1109/TIP.2006.875209 / IEEE Transactions on Image Processing / Fast point-based 3-D alignment of live cells by Matula (2006)
10.1109/TIP.2008.918017 / IEEE Transactions on Image Processing / Nonrigid registration of 3-D multichannel microscopy images of cell nuclei by Yang (2008)
10.1109/TMI.2004.835603 / IEEE Transactions on Medical Imaging / Motion gradient vector flow: an external force for tracking rolling leukocytes with shape and size constrained active contours by Ray (2004)
10.1109/TBME.2008.2005956 / IEEE Transactions on Biomedical Engineering / Automatic tracking of Escherichia coli in phase-contrast microscopy video by Xie (2009)
10.1016/j.media.2006.05.006 / Medical Image Analysis / A Monte Carlo approach to rolling leukocyte tracking in vivo by Cui (2006)
10.1111/j.1365-2818.2007.01799.x / Journal of Microscopy / Comparison of quantitative methods for cell-shape analysis by Pincus (2007)
10.1186/1471-2121-6-19 / BMC Cell Biology / Automated measurement of cell motility and proliferation by Bahnson (2005)
{'key': '10.1016/j.semcdb.2009.07.004_bib57', 'first-page': '5301', 'article-title': 'Fully automated three-dimensional tracking of cancer cells in collagen gels: determination of motility phenotypes at the cellular level', 'volume': '62', 'author': 'Demou', 'year': '2002', 'journal-title': 'Cancer Research'} / Cancer Research / Fully automated three-dimensional tracking of cancer cells in collagen gels: determination of motility phenotypes at the cellular level by Demou (2002)
{'key': '10.1016/j.semcdb.2009.07.004_bib58', 'first-page': 'S7', 'article-title': 'Photobleaching and photoactivation: following protein dynamics in living cells', 'volume': '5', 'author': 'Lippincott-Schwartz', 'year': '2003', 'journal-title': 'Nature Cell Biology'} / Nature Cell Biology / Photobleaching and photoactivation: following protein dynamics in living cells by Lippincott-Schwartz (2003)
10.1038/nmeth0808-671 / Nature Methods / Single-particle tracking: connecting the dots by Saxton (2008)
10.1073/pnas.0508047103 / Proceedings of the National Academy of Sciences of the United States of America / Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy by Ram (2006)
10.1088/1478-3967/2/1/008 / Physical Biology / Tracking single particles: a user-friendly quantitative evaluation by Carter (2005)
10.1364/AO.46.001819 / Applied Optics / Gaussian approximations of fluorescence microscope point-spread function models by Zhang (2007)
10.1016/S0006-3495(01)75884-5 / Biophysical Journal / Quantitative comparison of algorithms for tracking single fluorescent particles by Cheezum (2001)
10.1021/ar040136s / Accounts of Chemical Research / Fluorescence imaging with one nanometer accuracy: application to molecular motors by Yildiz (2005)
10.1046/j.1365-2818.2002.01066.x / Journal of Microscopy / Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement by Thomann (2002)
Smal I, Loog M, Niessen W, Meijering E. Quantitative comparison of spot detection methods in fluorescence microscopy. IEEE Transactions on Medical Imaging, in press.
10.1109/TIP.2006.872323 / IEEE Transactions on Image Processing / Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots by Genovesio (2006)
10.1109/TIP.2005.852787 / IEEE Transactions on Image Processing / Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics by Sage (2005)
10.1016/j.media.2008.03.004 / Medical Image Analysis / Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering by Smal (2008)
10.1002/cyto.a.20404 / Cytometry Part A / Detection of molecular particles in live cells via machine learning by Jiang (2007)
10.2144/000112224 / BioTechniques / Open Microscopy Environment and FindSpots: integrating image informatics with quantitative multidimensional image analysis by Schiffmann (2006)
10.1109/TIP.2005.852794 / IEEE Transactions on Image Processing / Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume by Bonneau (2005)
10.1111/j.1365-2818.2007.01723.x / Journal of Microscopy / Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells by Racine (2007)
10.1016/S0006-3495(03)74564-0 / Biophysical Journal / Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: a fluorescent speckle microscopy study by Vallotton (2003)
10.1016/j.jsb.2005.06.002 / Journal of Structural Biology / Feature point tracking and trajectory analysis for video imaging in cell biology by Sbalzarini (2005)
10.1038/nmeth.1237 / Nature Methods / Robust single-particle tracking in live-cell time-lapse sequences by Jaqaman (2008)
10.1109/TMI.2008.916964 / IEEE Transactions on Medical Imaging / Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: application to microtubule growth analysis by Smal (2008)
10.1529/biophysj.107.116285 / Biophysical Journal / Bayesian inference for improved single molecule fluorescence tracking by Yoon (2008)
10.1016/j.media.2008.12.004 / Medical Image Analysis / Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences by Godinez (2009)
10.1016/j.addr.2004.06.001 / Advanced Drug Delivery Reviews / Real-time multiple-particle tracking: application to drug and gene delivery by Suh (2005)
10.1016/S0006-3495(02)73971-4 / Biophysical Journal / Apparent subdiffusion inherent to single particle tracking by Martin (2002)
10.1126/science.1100533 / Science / Two distinct actin networks drive the protrusion of migrating cells by Ponti (2004)
10.1073/pnas.0504407102 / Proceedings of the National Academy of Sciences of the United States of America / Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes by Ewers (2005)
10.1038/nmeth928 / Nature Methods / Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes by Arhel (2006)
10.1186/1471-2121-5-45 / BMC Cell Biology / 4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin-poor tracks by Bacher (2004)
10.1186/1471-2105-6-125 / BMC Bioinformatics / Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking by Hamahashi (2005)
10.1038/nmeth.1228 / Nature Methods / Automated analysis of embryonic gene expression with cellular resolution in C. elegans by Murray (2008)
10.1126/science.1162493 / Science / Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy by Keller (2008)
10.2976/1.2907579 / HFSP Journal / Fast fluorescence microscopy for imaging the dynamics of embryonic development by Vermot (2008)
10.1006/dbio.2002.0631 / Developmental Biology / 3D-DIASemb: a computer-assisted system for reconstructing and motion analyzing in 4D every cell and nucleus in a developing embryo by Heid (2002)
10.1016/j.cub.2005.12.044 / Current Biology / A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis by Tassy (2006)
10.1073/pnas.0511111103 / Proceedings of the National Academy of Sciences of the United States of America / Automated cell lineage tracing in Caenorhabditis elegans by Bao (2006)
10.1038/nprot.2006.222 / Nature Protocols / The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree by Murray (2006)
10.4161/cc.5.3.2426 / Cell Cycle / Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells by Al-Kofahi (2006)
10.1109/TBME.2007.894981 / IEEE Transactions on Biomedical Engineering / A computational model for C. elegans locomotory behavior: application to multiworm tracking by Roussel (2007)
10.1109/TBME.2004.831532 / IEEE Transactions on Biomedical Engineering / Automatic tracking, feature extraction and classification of C. elegans phenotypes by Geng (2004)
10.1186/1471-2156-6-5 / BMC Genetics / An automated system for measuring parameters of nematode sinusoidal movement by Cronin (2005)
10.1016/j.jneumeth.2006.05.002 / Journal of Neuroscience Methods / Computer-driven automatic identification of locomotion states in Caenorhabditis elegans by Hoshi (2006)
10.1093/bioinformatics/btg087 / Bioinformatics / ALES: cell lineage analysis and mapping of developmental events by Braun (2003)
10.1186/1471-2105-7-275 / BMC Bioinformatics / AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis by Boyle (2006)

Dates

Type	When
Created	16 years ago (Aug. 5, 2009, 1:30 a.m.)
Deposited	6 years, 3 months ago (May 21, 2019, 1:30 p.m.)
Indexed	4 months, 2 weeks ago (April 8, 2025, 9:22 p.m.)
Issued	15 years, 10 months ago (Oct. 1, 2009)
Published	15 years, 10 months ago (Oct. 1, 2009)
Published Print	15 years, 10 months ago (Oct. 1, 2009)

Funders 0

None

BibTeX

@article{Meijering_2009, title={Tracking in cell and developmental biology}, volume={20}, ISSN={1084-9521}, url={http://dx.doi.org/10.1016/j.semcdb.2009.07.004}, DOI={10.1016/j.semcdb.2009.07.004}, number={8}, journal={Seminars in Cell & Developmental Biology}, publisher={Elsevier BV}, author={Meijering, Erik and Dzyubachyk, Oleh and Smal, Ihor and van Cappellen, Wiggert A.}, year={2009}, month=oct, pages={894–902} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        4,
        9
      ]
    ],
    "date-time": "2025-04-09T01:22:18Z",
    "timestamp": 1744161738094
  },
  "reference-count": 100,
  "publisher": "Elsevier BV",
  "issue": "8",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2009,
            10,
            1
          ]
        ],
        "date-time": "2009-10-01T00:00:00Z",
        "timestamp": 1254355200000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2009,
        10
      ]
    ]
  },
  "DOI": "10.1016/j.semcdb.2009.07.004",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2009,
        8,
        5
      ]
    ],
    "date-time": "2009-08-05T05:30:17Z",
    "timestamp": 1249450217000
  },
  "page": "894-902",
  "source": "Crossref",
  "is-referenced-by-count": 203,
  "title": "Tracking in cell and developmental biology",
  "prefix": "10.1016",
  "volume": "20",
  "author": [
    {
      "given": "Erik",
      "family": "Meijering",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Oleh",
      "family": "Dzyubachyk",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Ihor",
      "family": "Smal",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Wiggert A.",
      "family": "van Cappellen",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib1",
      "doi-asserted-by": "crossref",
      "first-page": "29",
      "DOI": "10.1109/MEMB.2007.907365",
      "article-title": "The symphony of life: importance, interaction, and visualization of biological rhythms",
      "volume": "27",
      "author": "Moser",
      "year": "2008",
      "journal-title": "IEEE Engineering in Medicine and Biology Magazine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib2",
      "first-page": "S16",
      "article-title": "Imagining imaging's future",
      "volume": "5",
      "author": "Tsien",
      "year": "2003",
      "journal-title": "Nature Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib3",
      "doi-asserted-by": "crossref",
      "first-page": "87",
      "DOI": "10.1126/science.1082520",
      "article-title": "Development and use of fluorescent protein markers in living cells",
      "volume": "300",
      "author": "Lippincott-Schwartz",
      "year": "2003",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib4",
      "doi-asserted-by": "crossref",
      "first-page": "217",
      "DOI": "10.1126/science.1124618",
      "article-title": "The fluorescent toolbox for assessing protein location and function",
      "volume": "312",
      "author": "Giepmans",
      "year": "2006",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib5",
      "doi-asserted-by": "crossref",
      "first-page": "82",
      "DOI": "10.1126/science.1082160",
      "article-title": "Light microscopy techniques for live cell imaging",
      "volume": "300",
      "author": "Stephens",
      "year": "2003",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib6",
      "series-title": "Handbook of biological confocal microscopy",
      "author": "Pawley",
      "year": "2006"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib7",
      "doi-asserted-by": "crossref",
      "first-page": "24",
      "DOI": "10.1038/nmeth.1291",
      "article-title": "Microscopy and its focal switch",
      "volume": "6",
      "author": "Hell",
      "year": "2009",
      "journal-title": "Nature Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib8",
      "doi-asserted-by": "crossref",
      "first-page": "3",
      "DOI": "10.1016/j.copbio.2005.01.003",
      "article-title": "From micro to nano: recent advances in high-resolution microscopy",
      "volume": "16",
      "author": "Garini",
      "year": "2005",
      "journal-title": "Current Opinion in Biotechnology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib9",
      "doi-asserted-by": "crossref",
      "first-page": "20",
      "DOI": "10.1109/MSP.2006.1628875",
      "article-title": "The colored revolution of bioimaging",
      "volume": "23",
      "author": "Vonesch",
      "year": "2006",
      "journal-title": "IEEE Signal Processing Magazine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib10",
      "doi-asserted-by": "crossref",
      "first-page": "100",
      "DOI": "10.1126/science.1082602",
      "article-title": "Informatics and quantitative analysis in biological imaging",
      "volume": "300",
      "author": "Swedlow",
      "year": "2003",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib11",
      "doi-asserted-by": "crossref",
      "first-page": "477",
      "DOI": "10.1083/jcb.200302097",
      "article-title": "Computational imaging in cell biology",
      "volume": "161",
      "author": "Eils",
      "year": "2003",
      "journal-title": "Journal of Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib12",
      "doi-asserted-by": "crossref",
      "first-page": "1233",
      "DOI": "10.1109/TIP.2005.855701",
      "article-title": "Special issue on molecular and cellular bioimaging",
      "volume": "14",
      "author": "Murphy",
      "year": "2005",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib13",
      "doi-asserted-by": "crossref",
      "first-page": "1190",
      "DOI": "10.1038/ncb1496",
      "article-title": "Modelling data across labs, genomes, space and time",
      "volume": "8",
      "author": "Swedlow",
      "year": "2006",
      "journal-title": "Nature Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib14",
      "doi-asserted-by": "crossref",
      "first-page": "63",
      "DOI": "10.1109/MSP.2006.1628879",
      "article-title": "Informatics challenges of high-throughput microscopy",
      "volume": "23",
      "author": "Zhou",
      "year": "2006",
      "journal-title": "IEEE Signal Processing Magazine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib15",
      "doi-asserted-by": "crossref",
      "first-page": "690",
      "DOI": "10.1038/nrm1979",
      "article-title": "High-throughput fluorescence microscopy for systems biology",
      "volume": "7",
      "author": "Pepperkok",
      "year": "2006",
      "journal-title": "Nature Reviews Molecular Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib16",
      "doi-asserted-by": "crossref",
      "first-page": "512",
      "DOI": "10.1109/JPROC.2007.913556",
      "article-title": "State of the art in information extraction and quantitative analysis for multimodality biomolecular imaging",
      "volume": "96",
      "author": "Ahmed",
      "year": "2008",
      "journal-title": "Proceedings of the IEEE"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib17",
      "doi-asserted-by": "crossref",
      "first-page": "497",
      "DOI": "10.1016/S0091-679X(08)85022-4",
      "article-title": "Computational processing and analysis of dynamic fluorescence image data",
      "volume": "85",
      "author": "Dorn",
      "year": "2008",
      "journal-title": "Methods in Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib18",
      "doi-asserted-by": "crossref",
      "first-page": "1827",
      "DOI": "10.1093/bioinformatics/btn346",
      "article-title": "Bioimage informatics: a new area of engineering biology",
      "volume": "24",
      "author": "Peng",
      "year": "2008",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib19",
      "doi-asserted-by": "crossref",
      "first-page": "85",
      "DOI": "10.1109/34.824822",
      "article-title": "Medical image analysis: progress over two decades and the challenges ahead",
      "volume": "22",
      "author": "Duncan",
      "year": "2000",
      "journal-title": "IEEE Transactions on Pattern Analysis and Machine Intelligence"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib20",
      "series-title": "Handbook of biomedical image analysis",
      "author": "Suri",
      "year": "2005"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib21",
      "series-title": "Handbook of medical image processing and analysis",
      "author": "Bankman",
      "year": "2008"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib22",
      "series-title": "Microscope image processing",
      "author": "Wu",
      "year": "2008"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib23",
      "series-title": "Microscopic image analysis for life science applications",
      "author": "Rittscher",
      "year": "2008"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib24",
      "doi-asserted-by": "crossref",
      "first-page": "46",
      "DOI": "10.1109/MSP.2006.1628877",
      "article-title": "Tracking in molecular bioimaging",
      "volume": "23",
      "author": "Meijering",
      "year": "2006",
      "journal-title": "IEEE Signal Processing Magazine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib25",
      "doi-asserted-by": "crossref",
      "first-page": "54",
      "DOI": "10.1109/MSP.2006.1628878",
      "article-title": "On the digital trail of mobile cells",
      "volume": "23",
      "author": "Zimmer",
      "year": "2006",
      "journal-title": "IEEE Signal Processing Magazine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib26",
      "doi-asserted-by": "crossref",
      "first-page": "3",
      "DOI": "10.1016/S1046-2023(02)00287-6",
      "article-title": "Quantitative motion analysis and visualization of cellular structures",
      "volume": "29",
      "author": "Gerlich",
      "year": "2003",
      "journal-title": "Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib27",
      "doi-asserted-by": "crossref",
      "first-page": "57",
      "DOI": "10.1007/s00285-008-0180-4",
      "article-title": "Multiple objects tracking in fluorescence microscopy",
      "volume": "58",
      "author": "Kalaidzidis",
      "year": "2009",
      "journal-title": "Journal of Mathematical Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib28",
      "doi-asserted-by": "crossref",
      "first-page": "3480",
      "DOI": "10.1038/sj.emboj.7601227",
      "article-title": "Imaging of cell migration",
      "volume": "25",
      "author": "Dormann",
      "year": "2006",
      "journal-title": "EMBO Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib29",
      "doi-asserted-by": "crossref",
      "first-page": "62",
      "DOI": "10.1111/j.1365-2818.2009.03144.x",
      "article-title": "Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration",
      "volume": "234",
      "author": "Hand",
      "year": "2009",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib30",
      "series-title": "Microscope image processing",
      "first-page": "401",
      "article-title": "Time-lapse imaging",
      "author": "Meijering",
      "year": "2008"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib31",
      "doi-asserted-by": "crossref",
      "first-page": "1",
      "DOI": "10.1155/IJBI/2006/12186",
      "article-title": "Probabilistic model-based cell tracking",
      "author": "Kachouie",
      "year": "2006",
      "journal-title": "International Journal of Biomedical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib32",
      "doi-asserted-by": "crossref",
      "first-page": "67",
      "DOI": "10.1111/j.0022-2720.2004.01338.x",
      "article-title": "Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections",
      "volume": "215",
      "author": "W\u00e4hlby",
      "year": "2004",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib33",
      "doi-asserted-by": "crossref",
      "first-page": "2405",
      "DOI": "10.1109/TCSI.2006.884469",
      "article-title": "Nuclei segmentation using marker-controlled watershed, tracking using mean-shift, and Kalman filter in time-lapse microscopy",
      "volume": "53",
      "author": "Yang",
      "year": "2006",
      "journal-title": "IEEE Transactions on Circuits and Systems I: Regular Papers"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib34",
      "doi-asserted-by": "crossref",
      "first-page": "724",
      "DOI": "10.1002/cyto.a.20430",
      "article-title": "A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images",
      "volume": "71",
      "author": "Lin",
      "year": "2007",
      "journal-title": "Cytometry Part A"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib35",
      "doi-asserted-by": "crossref",
      "first-page": "152",
      "DOI": "10.1109/TITB.2008.2007098",
      "article-title": "A novel cell segmentation method and cell phase identification using Markov model",
      "volume": "13",
      "author": "Zhou",
      "year": "2009",
      "journal-title": "IEEE Transactions on Information Technology in Biomedicine"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib36",
      "doi-asserted-by": "crossref",
      "first-page": "1212",
      "DOI": "10.1109/TMI.2002.806292",
      "article-title": "Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing",
      "volume": "21",
      "author": "Zimmer",
      "year": "2002",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib37",
      "doi-asserted-by": "crossref",
      "first-page": "221",
      "DOI": "10.1002/cm.10048",
      "article-title": "Simultaneous quantification of cell motility and protein-membrane-association using active contours",
      "volume": "52",
      "author": "Dormann",
      "year": "2002",
      "journal-title": "Cell Motility and the Cytoskeleton"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib38",
      "doi-asserted-by": "crossref",
      "first-page": "1222",
      "DOI": "10.1109/TMI.2002.806291",
      "article-title": "Tracking leukocytes in vivo with shape and size constrained active contours",
      "volume": "21",
      "author": "Ray",
      "year": "2002",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib39",
      "doi-asserted-by": "crossref",
      "first-page": "29",
      "DOI": "10.1002/cyto.a.20040",
      "article-title": "A model-based approach for automated in vitro cell tracking and chemotaxis analyses",
      "volume": "60A",
      "author": "Debeir",
      "year": "2004",
      "journal-title": "Cytometry Part A"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib40",
      "doi-asserted-by": "crossref",
      "first-page": "562",
      "DOI": "10.1109/TIP.2003.819858",
      "article-title": "Level set analysis for leukocyte detection and tracking",
      "volume": "13",
      "author": "Mukherjee",
      "year": "2004",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib41",
      "doi-asserted-by": "crossref",
      "first-page": "1396",
      "DOI": "10.1109/TIP.2005.852790",
      "article-title": "Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces",
      "volume": "14",
      "author": "Dufour",
      "year": "2005",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib42",
      "doi-asserted-by": "crossref",
      "first-page": "276",
      "DOI": "10.1016/j.chemolab.2005.07.007",
      "article-title": "Automatic tracking of biological cells and compartments using particle filters and active contours",
      "volume": "82",
      "author": "Shen",
      "year": "2006",
      "journal-title": "Chemometrics and Intelligent Laboratory Systems"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib43",
      "doi-asserted-by": "crossref",
      "first-page": "1781",
      "DOI": "10.1016/j.patrec.2007.05.008",
      "article-title": "Segmentation of heterogeneous blob objects through voting and level set formulation",
      "volume": "28",
      "author": "Chang",
      "year": "2007",
      "journal-title": "Pattern Recognition Letters"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib44",
      "doi-asserted-by": "crossref",
      "first-page": "546",
      "DOI": "10.1016/j.media.2008.06.001",
      "article-title": "Cell population tracking and lineage construction with spatiotemporal context",
      "volume": "12",
      "author": "Li",
      "year": "2008",
      "journal-title": "Medical Image Analysis"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib45",
      "doi-asserted-by": "crossref",
      "first-page": "178",
      "DOI": "10.1111/j.1365-2818.2008.03108.x",
      "article-title": "An automatic system for in vitro cell migration studies",
      "volume": "233",
      "author": "Degerman",
      "year": "2009",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib46",
      "doi-asserted-by": "crossref",
      "first-page": "143",
      "DOI": "10.1016/j.media.2008.06.018",
      "article-title": "Spatio-temporal cell cycle phase analysis using level sets and fast marching methods",
      "volume": "13",
      "author": "Padfield",
      "year": "2009",
      "journal-title": "Medical Image Analysis"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib47",
      "doi-asserted-by": "crossref",
      "first-page": "697",
      "DOI": "10.1109/TMI.2005.846851",
      "article-title": "Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes",
      "volume": "24",
      "author": "Debeir",
      "year": "2005",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib48",
      "doi-asserted-by": "crossref",
      "first-page": "65",
      "DOI": "10.1016/j.jim.2008.09.024",
      "article-title": "Automated 5-D analysis of cell migration and interaction in the thymic cortex from time-lapse sequences of 3-D multi-channel multi-photon images",
      "volume": "340",
      "author": "Chen",
      "year": "2009",
      "journal-title": "Journal of Immunological Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib49",
      "doi-asserted-by": "crossref",
      "first-page": "1939",
      "DOI": "10.1109/TIP.2006.873434",
      "article-title": "A correlation-based approach to calculate rotation and translation of moving cells",
      "volume": "15",
      "author": "Wilson",
      "year": "2006",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib50",
      "doi-asserted-by": "crossref",
      "first-page": "2388",
      "DOI": "10.1109/TIP.2006.875209",
      "article-title": "Fast point-based 3-D alignment of live cells",
      "volume": "15",
      "author": "Matula",
      "year": "2006",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib51",
      "doi-asserted-by": "crossref",
      "first-page": "493",
      "DOI": "10.1109/TIP.2008.918017",
      "article-title": "Nonrigid registration of 3-D multichannel microscopy images of cell nuclei",
      "volume": "17",
      "author": "Yang",
      "year": "2008",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib52",
      "doi-asserted-by": "crossref",
      "first-page": "1466",
      "DOI": "10.1109/TMI.2004.835603",
      "article-title": "Motion gradient vector flow: an external force for tracking rolling leukocytes with shape and size constrained active contours",
      "volume": "23",
      "author": "Ray",
      "year": "2004",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib53",
      "doi-asserted-by": "crossref",
      "first-page": "390",
      "DOI": "10.1109/TBME.2008.2005956",
      "article-title": "Automatic tracking of Escherichia coli in phase-contrast microscopy video",
      "volume": "56",
      "author": "Xie",
      "year": "2009",
      "journal-title": "IEEE Transactions on Biomedical Engineering"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib54",
      "doi-asserted-by": "crossref",
      "first-page": "598",
      "DOI": "10.1016/j.media.2006.05.006",
      "article-title": "A Monte Carlo approach to rolling leukocyte tracking in vivo",
      "volume": "10",
      "author": "Cui",
      "year": "2006",
      "journal-title": "Medical Image Analysis"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib55",
      "doi-asserted-by": "crossref",
      "first-page": "140",
      "DOI": "10.1111/j.1365-2818.2007.01799.x",
      "article-title": "Comparison of quantitative methods for cell-shape analysis",
      "volume": "227",
      "author": "Pincus",
      "year": "2007",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib56",
      "doi-asserted-by": "crossref",
      "first-page": "19",
      "DOI": "10.1186/1471-2121-6-19",
      "article-title": "Automated measurement of cell motility and proliferation",
      "volume": "6",
      "author": "Bahnson",
      "year": "2005",
      "journal-title": "BMC Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib57",
      "first-page": "5301",
      "article-title": "Fully automated three-dimensional tracking of cancer cells in collagen gels: determination of motility phenotypes at the cellular level",
      "volume": "62",
      "author": "Demou",
      "year": "2002",
      "journal-title": "Cancer Research"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib58",
      "first-page": "S7",
      "article-title": "Photobleaching and photoactivation: following protein dynamics in living cells",
      "volume": "5",
      "author": "Lippincott-Schwartz",
      "year": "2003",
      "journal-title": "Nature Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib59",
      "doi-asserted-by": "crossref",
      "first-page": "671",
      "DOI": "10.1038/nmeth0808-671",
      "article-title": "Single-particle tracking: connecting the dots",
      "volume": "5",
      "author": "Saxton",
      "year": "2008",
      "journal-title": "Nature Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib60",
      "doi-asserted-by": "crossref",
      "first-page": "4457",
      "DOI": "10.1073/pnas.0508047103",
      "article-title": "Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy",
      "volume": "103",
      "author": "Ram",
      "year": "2006",
      "journal-title": "Proceedings of the National Academy of Sciences of the United States of America"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib61",
      "doi-asserted-by": "crossref",
      "first-page": "60",
      "DOI": "10.1088/1478-3967/2/1/008",
      "article-title": "Tracking single particles: a user-friendly quantitative evaluation",
      "volume": "2",
      "author": "Carter",
      "year": "2005",
      "journal-title": "Physical Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib62",
      "doi-asserted-by": "crossref",
      "first-page": "1819",
      "DOI": "10.1364/AO.46.001819",
      "article-title": "Gaussian approximations of fluorescence microscope point-spread function models",
      "volume": "46",
      "author": "Zhang",
      "year": "2007",
      "journal-title": "Applied Optics"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib63",
      "doi-asserted-by": "crossref",
      "first-page": "2378",
      "DOI": "10.1016/S0006-3495(01)75884-5",
      "article-title": "Quantitative comparison of algorithms for tracking single fluorescent particles",
      "volume": "81",
      "author": "Cheezum",
      "year": "2001",
      "journal-title": "Biophysical Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib64",
      "doi-asserted-by": "crossref",
      "first-page": "574",
      "DOI": "10.1021/ar040136s",
      "article-title": "Fluorescence imaging with one nanometer accuracy: application to molecular motors",
      "volume": "38",
      "author": "Yildiz",
      "year": "2005",
      "journal-title": "Accounts of Chemical Research"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib65",
      "doi-asserted-by": "crossref",
      "first-page": "49",
      "DOI": "10.1046/j.1365-2818.2002.01066.x",
      "article-title": "Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement",
      "volume": "208",
      "author": "Thomann",
      "year": "2002",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib66",
      "unstructured": "Smal I, Loog M, Niessen W, Meijering E. Quantitative comparison of spot detection methods in fluorescence microscopy. IEEE Transactions on Medical Imaging, in press."
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib67",
      "doi-asserted-by": "crossref",
      "first-page": "1062",
      "DOI": "10.1109/TIP.2006.872323",
      "article-title": "Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots",
      "volume": "15",
      "author": "Genovesio",
      "year": "2006",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib68",
      "doi-asserted-by": "crossref",
      "first-page": "1372",
      "DOI": "10.1109/TIP.2005.852787",
      "article-title": "Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics",
      "volume": "14",
      "author": "Sage",
      "year": "2005",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib69",
      "doi-asserted-by": "crossref",
      "first-page": "764",
      "DOI": "10.1016/j.media.2008.03.004",
      "article-title": "Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering",
      "volume": "12",
      "author": "Smal",
      "year": "2008",
      "journal-title": "Medical Image Analysis"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib70",
      "doi-asserted-by": "crossref",
      "first-page": "563",
      "DOI": "10.1002/cyto.a.20404",
      "article-title": "Detection of molecular particles in live cells via machine learning",
      "volume": "71",
      "author": "Jiang",
      "year": "2007",
      "journal-title": "Cytometry Part A"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib71",
      "doi-asserted-by": "crossref",
      "first-page": "199",
      "DOI": "10.2144/000112224",
      "article-title": "Open Microscopy Environment and FindSpots: integrating image informatics with quantitative multidimensional image analysis",
      "volume": "41",
      "author": "Schiffmann",
      "year": "2006",
      "journal-title": "BioTechniques"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib72",
      "doi-asserted-by": "crossref",
      "first-page": "1384",
      "DOI": "10.1109/TIP.2005.852794",
      "article-title": "Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume",
      "volume": "14",
      "author": "Bonneau",
      "year": "2005",
      "journal-title": "IEEE Transactions on Image Processing"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib73",
      "doi-asserted-by": "crossref",
      "first-page": "214",
      "DOI": "10.1111/j.1365-2818.2007.01723.x",
      "article-title": "Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells",
      "volume": "225",
      "author": "Racine",
      "year": "2007",
      "journal-title": "Journal of Microscopy"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib74",
      "doi-asserted-by": "crossref",
      "first-page": "1289",
      "DOI": "10.1016/S0006-3495(03)74564-0",
      "article-title": "Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: a fluorescent speckle microscopy study",
      "volume": "85",
      "author": "Vallotton",
      "year": "2003",
      "journal-title": "Biophysical Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib75",
      "doi-asserted-by": "crossref",
      "first-page": "182",
      "DOI": "10.1016/j.jsb.2005.06.002",
      "article-title": "Feature point tracking and trajectory analysis for video imaging in cell biology",
      "volume": "151",
      "author": "Sbalzarini",
      "year": "2005",
      "journal-title": "Journal of Structural Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib76",
      "doi-asserted-by": "crossref",
      "first-page": "695",
      "DOI": "10.1038/nmeth.1237",
      "article-title": "Robust single-particle tracking in live-cell time-lapse sequences",
      "volume": "5",
      "author": "Jaqaman",
      "year": "2008",
      "journal-title": "Nature Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib77",
      "doi-asserted-by": "crossref",
      "first-page": "789",
      "DOI": "10.1109/TMI.2008.916964",
      "article-title": "Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: application to microtubule growth analysis",
      "volume": "27",
      "author": "Smal",
      "year": "2008",
      "journal-title": "IEEE Transactions on Medical Imaging"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib78",
      "doi-asserted-by": "crossref",
      "first-page": "4932",
      "DOI": "10.1529/biophysj.107.116285",
      "article-title": "Bayesian inference for improved single molecule fluorescence tracking",
      "volume": "94",
      "author": "Yoon",
      "year": "2008",
      "journal-title": "Biophysical Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib79",
      "doi-asserted-by": "crossref",
      "first-page": "325",
      "DOI": "10.1016/j.media.2008.12.004",
      "article-title": "Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences",
      "volume": "13",
      "author": "Godinez",
      "year": "2009",
      "journal-title": "Medical Image Analysis"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib80",
      "doi-asserted-by": "crossref",
      "first-page": "63",
      "DOI": "10.1016/j.addr.2004.06.001",
      "article-title": "Real-time multiple-particle tracking: application to drug and gene delivery",
      "volume": "57",
      "author": "Suh",
      "year": "2005",
      "journal-title": "Advanced Drug Delivery Reviews"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib81",
      "doi-asserted-by": "crossref",
      "first-page": "2109",
      "DOI": "10.1016/S0006-3495(02)73971-4",
      "article-title": "Apparent subdiffusion inherent to single particle tracking",
      "volume": "83",
      "author": "Martin",
      "year": "2002",
      "journal-title": "Biophysical Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib82",
      "doi-asserted-by": "crossref",
      "first-page": "1782",
      "DOI": "10.1126/science.1100533",
      "article-title": "Two distinct actin networks drive the protrusion of migrating cells",
      "volume": "305",
      "author": "Ponti",
      "year": "2004",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib83",
      "doi-asserted-by": "crossref",
      "first-page": "15110",
      "DOI": "10.1073/pnas.0504407102",
      "article-title": "Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes",
      "volume": "102",
      "author": "Ewers",
      "year": "2005",
      "journal-title": "Proceedings of the National Academy of Sciences of the United States of America"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib84",
      "doi-asserted-by": "crossref",
      "first-page": "817",
      "DOI": "10.1038/nmeth928",
      "article-title": "Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes",
      "volume": "3",
      "author": "Arhel",
      "year": "2006",
      "journal-title": "Nature Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib85",
      "doi-asserted-by": "crossref",
      "first-page": "1",
      "DOI": "10.1186/1471-2121-5-45",
      "article-title": "4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin-poor tracks",
      "volume": "5",
      "author": "Bacher",
      "year": "2004",
      "journal-title": "BMC Cell Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib86",
      "doi-asserted-by": "crossref",
      "first-page": "125",
      "DOI": "10.1186/1471-2105-6-125",
      "article-title": "Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking",
      "volume": "6",
      "author": "Hamahashi",
      "year": "2005",
      "journal-title": "BMC Bioinformatics"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib87",
      "doi-asserted-by": "crossref",
      "first-page": "703",
      "DOI": "10.1038/nmeth.1228",
      "article-title": "Automated analysis of embryonic gene expression with cellular resolution in C. elegans",
      "volume": "5",
      "author": "Murray",
      "year": "2008",
      "journal-title": "Nature Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib88",
      "doi-asserted-by": "crossref",
      "first-page": "1065",
      "DOI": "10.1126/science.1162493",
      "article-title": "Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy",
      "volume": "322",
      "author": "Keller",
      "year": "2008",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib89",
      "doi-asserted-by": "crossref",
      "first-page": "143",
      "DOI": "10.2976/1.2907579",
      "article-title": "Fast fluorescence microscopy for imaging the dynamics of embryonic development",
      "volume": "2",
      "author": "Vermot",
      "year": "2008",
      "journal-title": "HFSP Journal"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib90",
      "doi-asserted-by": "crossref",
      "first-page": "329",
      "DOI": "10.1006/dbio.2002.0631",
      "article-title": "3D-DIASemb: a computer-assisted system for reconstructing and motion analyzing in 4D every cell and nucleus in a developing embryo",
      "volume": "245",
      "author": "Heid",
      "year": "2002",
      "journal-title": "Developmental Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib91",
      "doi-asserted-by": "crossref",
      "first-page": "345",
      "DOI": "10.1016/j.cub.2005.12.044",
      "article-title": "A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis",
      "volume": "16",
      "author": "Tassy",
      "year": "2006",
      "journal-title": "Current Biology"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib92",
      "doi-asserted-by": "crossref",
      "first-page": "2707",
      "DOI": "10.1073/pnas.0511111103",
      "article-title": "Automated cell lineage tracing in Caenorhabditis elegans",
      "volume": "103",
      "author": "Bao",
      "year": "2006",
      "journal-title": "Proceedings of the National Academy of Sciences of the United States of America"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib93",
      "doi-asserted-by": "crossref",
      "first-page": "1468",
      "DOI": "10.1038/nprot.2006.222",
      "article-title": "The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree",
      "volume": "1",
      "author": "Murray",
      "year": "2006",
      "journal-title": "Nature Protocols"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib94",
      "doi-asserted-by": "crossref",
      "first-page": "327",
      "DOI": "10.4161/cc.5.3.2426",
      "article-title": "Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells",
      "volume": "5",
      "author": "Al-Kofahi",
      "year": "2006",
      "journal-title": "Cell Cycle"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib95",
      "doi-asserted-by": "crossref",
      "first-page": "1786",
      "DOI": "10.1109/TBME.2007.894981",
      "article-title": "A computational model for C. elegans locomotory behavior: application to multiworm tracking",
      "volume": "54",
      "author": "Roussel",
      "year": "2007",
      "journal-title": "IEEE Transactions on Biomedical Engineering"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib96",
      "doi-asserted-by": "crossref",
      "first-page": "1811",
      "DOI": "10.1109/TBME.2004.831532",
      "article-title": "Automatic tracking, feature extraction and classification of C. elegans phenotypes",
      "volume": "51",
      "author": "Geng",
      "year": "2004",
      "journal-title": "IEEE Transactions on Biomedical Engineering"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib97",
      "doi-asserted-by": "crossref",
      "first-page": "5",
      "DOI": "10.1186/1471-2156-6-5",
      "article-title": "An automated system for measuring parameters of nematode sinusoidal movement",
      "volume": "6",
      "author": "Cronin",
      "year": "2005",
      "journal-title": "BMC Genetics"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib98",
      "doi-asserted-by": "crossref",
      "first-page": "355",
      "DOI": "10.1016/j.jneumeth.2006.05.002",
      "article-title": "Computer-driven automatic identification of locomotion states in Caenorhabditis elegans",
      "volume": "157",
      "author": "Hoshi",
      "year": "2006",
      "journal-title": "Journal of Neuroscience Methods"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib99",
      "doi-asserted-by": "crossref",
      "first-page": "851",
      "DOI": "10.1093/bioinformatics/btg087",
      "article-title": "ALES: cell lineage analysis and mapping of developmental events",
      "volume": "19",
      "author": "Braun",
      "year": "2003",
      "journal-title": "Bioinformatics"
    },
    {
      "key": "10.1016/j.semcdb.2009.07.004_bib100",
      "doi-asserted-by": "crossref",
      "first-page": "275",
      "DOI": "10.1186/1471-2105-7-275",
      "article-title": "AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis",
      "volume": "7",
      "author": "Boyle",
      "year": "2006",
      "journal-title": "BMC Bioinformatics"
    }
  ],
  "container-title": "Seminars in Cell &amp; Developmental Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1084952109001517?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1084952109001517?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2019,
        5,
        21
      ]
    ],
    "date-time": "2019-05-21T17:30:15Z",
    "timestamp": 1558459815000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S1084952109001517"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2009,
        10
      ]
    ]
  },
  "references-count": 100,
  "journal-issue": {
    "issue": "8",
    "published-print": {
      "date-parts": [
        [
          2009,
          10
        ]
      ]
    }
  },
  "alternative-id": [
    "S1084952109001517"
  ],
  "URL": "http://dx.doi.org/10.1016/j.semcdb.2009.07.004",
  "relation": {},
  "ISSN": [
    "1084-9521"
  ],
  "subject": [],
  "container-title-short": "Seminars in Cell &amp; Developmental Biology",
  "published": {
    "date-parts": [
      [
        2009,
        10
      ]
    ]
  }
}