Bibliography
Zheng, G., Dahl, J. A., Niu, Y., Fedorcsak, P., Huang, C.-M., Li, C. J., VÃ¥gbø, C. B., Shi, Y., Wang, W.-L., Song, S.-H., Lu, Z., Bosmans, R. P. G., Dai, Q., Hao, Y.-J., Yang, X., Zhao, W.-M., Tong, W.-M., Wang, X.-J., Bogdan, F., ⦠He, C. (2013). ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility. Molecular Cell, 49(1), 18â29.
Authors
28
- Guanqun Zheng (first)
- John Arne Dahl (additional)
- Yamei Niu (additional)
- Peter Fedorcsak (additional)
- Chun-Min Huang (additional)
- Charles J. Li (additional)
- Cathrine B. Vågbø (additional)
- Yue Shi (additional)
- Wen-Ling Wang (additional)
- Shu-Hui Song (additional)
- Zhike Lu (additional)
- Ralph P.G. Bosmans (additional)
- Qing Dai (additional)
- Ya-Juan Hao (additional)
- Xin Yang (additional)
- Wen-Ming Zhao (additional)
- Wei-Min Tong (additional)
- Xiu-Jie Wang (additional)
- Florian Bogdan (additional)
- Kari Furu (additional)
- Ye Fu (additional)
- Guifang Jia (additional)
- Xu Zhao (additional)
- Jun Liu (additional)
- Hans E. Krokan (additional)
- Arne Klungland (additional)
- Yun-Gui Yang (additional)
- Chuan He (additional)
References
69
Referenced
2,934
10.1242/jcs.110.9.1073
/ J. Cell Sci. / A nematode gene required for sperm vesicle fusion by Achanzar (1997)10.1038/75556
/ Nat. Genet. / Gene ontology: tool for the unification of biology by Ashburner (2000)10.1016/j.molcel.2012.05.021
/ Mol. Cell / The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts by Baltz (2012)10.1093/nar/gkq266
/ Nucleic Acids Res. / Yeast targets for mRNA methylation by Bodi (2010){'key': '10.1016/j.molcel.2012.10.015_bib5', 'first-page': '141', 'article-title': 'Fine-Tuning of RNA Functions by Modification and Editing, Volume 12', 'author': 'Bokar', 'year': '2005'}
/ Fine-Tuning of RNA Functions by Modification and Editing, Volume 12 by Bokar (2005){'key': '10.1016/j.molcel.2012.10.015_bib6', 'first-page': '1233', 'article-title': 'Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase', 'volume': '3', 'author': 'Bokar', 'year': '1997', 'journal-title': 'RNA'}
/ RNA / Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase by Bokar (1997){'key': '10.1016/j.molcel.2012.10.015_bib7', 'first-page': '538', 'article-title': 'Effect of undermethylation on mRNA cytoplasmic appearance and half-life', 'volume': '4', 'author': 'Camper', 'year': '1984', 'journal-title': 'Mol. Cell. Biol.'}
/ Mol. Cell. Biol. / Effect of undermethylation on mRNA cytoplasmic appearance and half-life by Camper (1984)10.1093/nar/gkq1028
/ Nucleic Acids Res. / The RNA Modification Database, RNAMDB: 2011 update by Cantara (2011)10.1093/nar/gkr981
/ Nucleic Acids Res. / Reorganizing the protein space at the Universal Protein Resource (UniProt) by Consortium (2012)10.1242/jcs.02704
/ J. Cell Sci. / FGFR-1 [corrected] signaling is involved in spermiogenesis and sperm capacitation by Cotton (2006)10.1016/j.molcel.2011.08.039
/ Mol. Cell / DNA unwinding by ASCC3 helicase is coupled to ALKBH3-dependent DNA alkylation repair and cancer cell proliferation by Dango (2011)10.1038/nature11112
/ Nature / Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq by Dominissini (2012)10.1073/pnas.262589799
/ Proc. Natl. Acad. Sci. USA / Reversal of DNA alkylation damage by two human dioxygenases by Duncan (2002)10.1091/mbc.9.9.2407
/ Mol. Biol. Cell / Partially processed pre-rRNA is preserved in association with processing components in nucleolus-derived foci during mitosis by Dundr (1998)10.1038/nature01048
/ Nature / AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli by Falnes (2002)10.1016/0042-6822(83)90508-1
/ Virology / Methylations of adenosine residues (m6A) in pre-mRNA are important for formation of late simian virus 40 mRNAs by Finkel (1983)10.1038/nature07848
/ Nature / Inactivation of the Fto gene protects from obesity by Fischer (2009)10.1126/science.1141634
/ Science / A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity by Frayling (2007)10.1002/anie.201001242
/ Angew. Chem. Int. Ed. Engl. / The AlkB domain of mammalian ABH8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of tRNA by Fu (2010)10.1146/annurev.med.59.061606.095816
/ Annu. Rev. Med. / Cancer epigenetics: modifications, screening, and therapy by Gal-Yam (2008)10.1016/j.jmb.2011.01.040
/ J. Mol. Biol. / Operating on chromatin, a colorful language where context matters by Gardner (2011)10.1126/science.1151710
/ Science / The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase by Gerken (2007)10.1111/j.1742-4658.2010.07987.x
/ FEBS J. / Serine-arginine protein kinases: a small protein kinase family with a large cellular presence by Giannakouros (2011)10.1016/S1097-2765(04)00030-9
/ Mol. Cell / The Glc7p nuclear phosphatase promotes mRNA export by facilitating association of Mex67p with mRNA by Gilbert (2004)10.1002/anie.201103229
/ Angew. Chem. Int. Ed. Engl. / Systems-based analysis of modified tRNA bases by Globisch (2011){'key': '10.1016/j.molcel.2012.10.015_bib26', 'series-title': 'The testis: from stem cell to sperm function', 'author': 'Goldberg', 'year': '2000'}
/ The testis: from stem cell to sperm function by Goldberg (2000)10.1093/nar/18.19.5735
/ Nucleic Acids Res. / Sequence specificity of the human mRNA N6-adenosine methylase in vitro by Harper (1990)10.1023/A:1009752804126
/ Methods Cell Sci. / Visualisation of ribosomal RNA (rRNA) synthesis in eukaryotic cells in culture by Haukenes (1998)10.1038/nchembio.482
/ Nat. Chem. Biol. / Grand challenge commentary: RNA epigenetics? by He (2010)10.1093/carcin/bgm194
/ Carcinogenesis / Genome-wide detection of testis- and testicular cancer-specific alternative splicing by He (2007)10.1126/science.1210944
/ Science / Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA by He (2011)10.1083/jcb.126.4.877
/ J. Cell Biol. / In vivo analysis of the stability and transport of nuclear poly(A)+ RNA by Huang (1994)10.1126/science.1210597
/ Science / Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine by Ito (2011)10.1016/0003-9861(68)90553-5
/ Arch. Biochem. Biophys. / Methylated bases of ribosomal ribonucleic acid from HeLa cells by Iwanami (1968)10.1038/ng1089
/ Nat. Genet. / Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals by Jaenisch (2003)10.1038/nchembio.687
/ Nat. Chem. Biol. / N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO by Jia (2011){'key': '10.1016/j.molcel.2012.10.015_bib37', 'first-page': '2298', 'article-title': 'Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing', 'volume': '5', 'author': 'Kane', 'year': '1985', 'journal-title': 'Mol. Cell. Biol.'}
/ Mol. Cell. Biol. / Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing by Kane (1985)10.1038/nrm2255
/ Nat. Rev. Mol. Cell Biol. / Exporting RNA from the nucleus to the cytoplasm by Köhler (2007)10.1016/j.cell.2005.06.008
/ Cell / Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability by Li (2005)10.1007/s11033-008-9276-6
/ Mol. Biol. Rep. / Molecular cloning and characterization of a novel transcript variant of Mtsarg1 gene by Li (2009)10.1128/MCB.18.12.7565
/ Mol. Cell. Biol. / Eukaryotic translation initiation factor 4G is targeted for proteolytic cleavage by caspase 3 during inhibition of translation in apoptotic cells by Marissen (1998)10.1016/j.cell.2012.05.003
/ Cell / Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons by Meyer (2012)10.1016/j.molcel.2008.03.013
/ Mol. Cell / The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1 by Michlewski (2008)10.1016/0304-4211(81)90071-7
/ Plant Sci. Lett. / Nucleotides adjacent to N6-methyladenosine in maize poly(A)-containing RNA by Nichols (1981)10.1152/physiolgenomics.00215.2004
/ Physiol. Genomics / Expression profiling of purified male germ cells: stage-specific expression patterns related to meiosis and postmeiotic development by Pang (2006)10.1093/hmg/ddp426
/ Hum. Mol. Genet. / CDKL5 influences RNA splicing activity by its association to the nuclear speckle molecular machinery by Ricciardi (2009)10.1016/j.mrfmmm.2003.11.017
/ Mutat. Res. / Gene expression patterns associated with infertility in humans and rodent models by Rockett (2004)10.1016/j.modgep.2003.11.003
/ Gene Expr. Patterns / Analysis of the gene expression profile of mouse male meiotic germ cells by Rossi (2004)10.1093/database/baq020
/ Database (Oxford) / GeneCards Version 3: the human gene integrator by Safran (2010)10.1016/0005-2787(69)90078-1
/ Biochim. Biophys. Acta / Isolation and characterization of N6-methyladenosine from Escherichia coli valine transfer RNA by Saneyoshi (1969)10.1038/ncomms1478
/ Nat. Commun. / In vitro production of fertile sperm from murine spermatogonial stem cell lines by Sato (2011)10.1016/0022-2836(77)90110-3
/ J. Mol. Biol. / Comparison of methylated sequences in messenger RNA and heterogeneous nuclear RNA from mouse L cells by Schibler (1977)10.1126/science.1142382
/ Science / A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants by Scott (2007)10.1038/nrm1312
/ Nat. Rev. Mol. Cell Biol. / Repairing DNA-methylation damage by Sedgwick (2004){'key': '10.1016/j.molcel.2012.10.015_bib55', 'first-page': '1078', 'article-title': 'IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae', 'volume': '12', 'author': 'Shah', 'year': '1992', 'journal-title': 'Mol. Cell. Biol.'}
/ Mol. Cell. Biol. / IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae by Shah (1992)10.1098/rstb.2009.0124
/ Philos. Trans. R. Soc. Lond. B Biol. Sci. / Male germ cell apoptosis: regulation and biology by Shaha (2010)10.1007/s11010-006-9168-9
/ Mol. Cell. Biochem. / Role of selenium in spermatogenesis: differential expression of cjun and cfos in tubular cells of mice testis by Shalini (2006)10.1038/nature06397
/ Nature / The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA by Sharif (2007)10.1016/j.cell.2004.12.012
/ Cell / Histone demethylation mediated by the nuclear amine oxidase homolog LSD1 by Shi (2004)10.1126/science.1170116
/ Science / Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1 by Tahiliani (2009)10.1371/journal.pone.0016210
/ PLoS ONE / Human AlkB homologue 5 is a nuclear 2-oxoglutarate dependent oxygenase and a direct target of hypoxia-inducible factor 1α (HIF-1α) by Thalhammer (2011)10.1093/bioinformatics/btp120
/ Bioinformatics / TopHat: discovering splice junctions with RNA-Seq by Trapnell (2009)10.1038/nbt.1621
/ Nat. Biotechnol. / Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation by Trapnell (2010)10.1038/nature00908
/ Nature / Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage by Trewick (2002)10.1038/nature04433
/ Nature / Histone demethylation by a family of JmjC domain-containing proteins by Tsukada (2006)10.1038/ncomms1173
/ Nat. Commun. / ALKBH8-mediated formation of a novel diastereomeric pair of wobble nucleosides in mammalian tRNA by van den Born (2011)10.1021/bi00647a024
/ Biochemistry / 5′-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA by Wei (1976)10.1038/nature09497
/ Nature / Iron-catalysed oxidation intermediates captured in a DNA repair dioxygenase by Yi (2010)10.1105/tpc.108.058883
/ Plant Cell / MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor by Zhong (2008)
Dates
Type | When |
---|---|
Created | 12 years, 9 months ago (Nov. 21, 2012, 1:45 p.m.) |
Deposited | 1 year, 3 months ago (May 11, 2024, 4:09 a.m.) |
Indexed | 8 minutes ago (Sept. 4, 2025, 6:50 a.m.) |
Issued | 12 years, 8 months ago (Jan. 1, 2013) |
Published | 12 years, 8 months ago (Jan. 1, 2013) |
Published Print | 12 years, 8 months ago (Jan. 1, 2013) |
@article{Zheng_2013, title={ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility}, volume={49}, ISSN={1097-2765}, url={http://dx.doi.org/10.1016/j.molcel.2012.10.015}, DOI={10.1016/j.molcel.2012.10.015}, number={1}, journal={Molecular Cell}, publisher={Elsevier BV}, author={Zheng, Guanqun and Dahl, John Arne and Niu, Yamei and Fedorcsak, Peter and Huang, Chun-Min and Li, Charles J. and Vågbø, Cathrine B. and Shi, Yue and Wang, Wen-Ling and Song, Shu-Hui and Lu, Zhike and Bosmans, Ralph P.G. and Dai, Qing and Hao, Ya-Juan and Yang, Xin and Zhao, Wen-Ming and Tong, Wei-Min and Wang, Xiu-Jie and Bogdan, Florian and Furu, Kari and Fu, Ye and Jia, Guifang and Zhao, Xu and Liu, Jun and Krokan, Hans E. and Klungland, Arne and Yang, Yun-Gui and He, Chuan}, year={2013}, month=jan, pages={18–29} }