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Molecular Cell (78)
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Vannini, A., & Cramer, P. (2012). Conservation between the RNA Polymerase I, II, and III Transcription Initiation Machineries. Molecular Cell, 45(4), 439–446.

Authors 2
  1. Alessandro Vannini (first)
  2. Patrick Cramer (additional)
References 99 Referenced 372
  1. 10.1083/jcb.201006040 / J. Cell Biol. / RNA polymerase I-specific subunits promote polymerase clustering to enhance the rRNA gene transcription cycle by Albert (2011)
  2. 10.1006/jmbi.1999.2724 / J. Mol. Biol. / Mutagenesis of yeast TFIIIB70 reveals C-terminal residues critical for interaction with TBP and C34 by Andrau (1999)
  3. 10.1128/MCB.20.14.5269-5275.2000 / Mol. Cell. Biol. / TATA binding protein can stimulate core-directed transcription by yeast RNA polymerase I by Aprikian (2000)
  4. 10.1074/jbc.M413038200 / J. Biol. Chem. / Structures of complete RNA polymerase II and its subcomplex, Rpb4/7 by Armache (2005)
  5. 10.1128/MCB.01464-07 / Mol. Cell. Biol. / Two RNA polymerase I subunits control the binding and release of Rrn3 during transcription by Beckouet (2008)
  6. 10.1016/S0021-9258(19)41057-0 / J. Biol. Chem. / In vitro synthesis of transfer RNA. I. Purification of required components by Bikoff (1975)
  7. 10.1016/S0021-9258(19)41058-2 / J. Biol. Chem. / In vitro synthesis of transfer RNA. II. Identification of required enzymatic activities by Bikoff (1975)
  8. 10.1101/gad.17363311 / Genes Dev. / Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth by Blattner (2011)
  9. 10.1093/embo-reports/kvd032 / EMBO Rep. / TIF-IA, the factor mediating growth-dependent control of ribosomal RNA synthesis, is the mammalian homolog of yeast Rrn3p by Bodem (2000)
  10. 10.1093/emboj/16.18.5730 / EMBO J. / Dual role of the C34 subunit of RNA polymerase III in transcription initiation by Brun (1997)
  11. 10.1074/jbc.M111.297572 / J. Biol. Chem. / Inactivated RNA polymerase II open complexes can be reactivated with TFIIE by Cabart (2012)
  12. 10.1073/pnas.1104591108 / Proc. Natl. Acad. Sci. USA / Transcription factor TFIIF is not required for initiation by RNA polymerase II, but it is essential to stabilize transcription factor TFIIB in early elongation complexes by Čabart (2011)
  13. 10.1093/molbev/msp316 / Mol. Biol. Evol. / The increase in the number of subunits in eukaryotic RNA polymerase III relative to RNA polymerase II is due to the permanent recruitment of general transcription factors by Carter (2010)
  14. 10.1016/j.cell.2004.09.028 / Cell / Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC by Chen (2004)
  15. 10.1128/MCB.24.9.3983-3991.2004 / Mol. Cell. Biol. / Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: implications for the mechanism of transcription initiation by Chen (2004)
  16. 10.1038/nsmb1272 / Nat. Struct. Mol. Biol. / The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex by Chen (2007)
  17. 10.1038/emboj.2009.401 / EMBO J. / Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry by Chen (2010)
  18. 10.1101/gad.6.10.1940 / Genes Dev. / A yeast TFIIB-related factor involved in RNA polymerase III transcription by Colbert (1992)
  19. 10.1016/S0079-6603(08)61009-0 / Prog. Nucleic Acid Res. Mol. Biol. / General transcription factors for RNA polymerase II by Conaway (1997)
  20. 10.1016/0092-8674(92)90232-2 / Cell / The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells by Cormack (1992)
  21. 10.1146/annurev.biophys.37.032807.130008 / Annu. Rev. Biophys. / Structure of eukaryotic RNA polymerases by Cramer (2008)
  22. 10.1128/MCB.19.12.8042 / Mol. Cell. Biol. / A subunit of yeast TFIIIC participates in the recruitment of TATA-binding protein by Deprez (1999)
  23. 10.1074/jbc.272.45.28175 / J. Biol. Chem. / Promoter escape by RNA polymerase II. Formation of an escape-competent transcriptional intermediate is a prerequisite for exit of polymerase from the promoter by Dvir (1997)
  24. 10.1016/j.dnarep.2011.04.021 / DNA Repair (Amst.) / A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor by Egly (2011)
  25. 10.1038/emboj.2009.386 / EMBO J. / Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex by Eichner (2010)
  26. 10.1016/j.cell.2011.10.041 / Cell / Structural basis for promoter-10 element recognition by the bacterial RNA polymerase σ subunit by Feklistov (2011)
  27. 10.1038/emboj.2010.266 / EMBO J. / Conformational flexibility of RNA polymerase III during transcriptional elongation by Fernández-Tornero (2010)
  28. 10.1128/MCB.06242-11 / Mol. Cell. Biol. / Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF by Fishburn (2012)
  29. 10.1006/jmbi.2000.4110 / J. Mol. Biol. / Novel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 A resolution by Gaiser (2000)
  30. 10.1016/j.molcel.2010.07.028 / Mol. Cell / RNA polymerase I contains a TFIIF-related DNA-binding subcomplex by Geiger (2010)
  31. 10.1016/j.molcel.2011.05.030 / Mol. Cell / The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation by Grohmann (2011)
  32. 10.1074/jbc.M707371200 / J. Biol. Chem. / Transcription factor E is a part of transcription elongation complexes by Grünberg (2007)
  33. 10.1128/MMBR.62.2.465-503.1998 / Microbiol. Mol. Biol. Rev. / Molecular genetics of the RNA polymerase II general transcriptional machinery by Hampsey (1998)
  34. 10.1038/374653a0 / Nature / A TBP-TAF complex required for transcription of human snRNA genes by RNA polymerase II and III by Henry (1995)
  35. 10.1002/j.1460-2075.1995.tb07059.x / EMBO J. / The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA by Holstege (1995)
  36. 10.1093/emboj/16.24.7468 / EMBO J. / Three transitions in the RNA polymerase II transcription complex during initiation by Holstege (1997)
  37. 10.1128/MCB.22.22.8044-8055.2002 / Mol. Cell. Biol. / Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits by Hu (2002)
  38. 10.1016/j.molcel.2006.05.013 / Mol. Cell / Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model by Jasiak (2006)
  39. 10.1038/nature01534 / Nature / Crystal structure of a transcription factor IIIB core interface ternary complex by Juo (2003)
  40. 10.1073/pnas.88.16.7308 / Proc. Natl. Acad. Sci. USA / Two essential components of the Saccharomyces cerevisiae transcription factor TFIIIB: transcription and DNA-binding properties by Kassavetis (1991)
  41. 10.1016/0092-8674(92)90399-W / Cell / The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB by Kassavetis (1992)
  42. 10.1074/jbc.M300743200 / J. Biol. Chem. / The role of transcription initiation factor IIIB subunits in promoter opening probed by photochemical cross-linking by Kassavetis (2003)
  43. 10.1074/jbc.M109.074013 / J. Biol. Chem. / The C53/C37 subcomplex of RNA polymerase III lies near the active site and participates in promoter opening by Kassavetis (2010)
  44. 10.1016/0006-291X(70)91099-5 / Biochem. Biophys. Res. Commun. / Alpha-amanitin: a specific inhibitor of one of two DNA-pendent RNA polymerase activities from calf thymus by Kedinger (1970)
  45. 10.1101/gad.8.23.2879 / Genes Dev. / Conserved functional domains of the RNA polymerase III general transcription factor BRF by Khoo (1994)
  46. 10.1126/science.288.5470.1418 / Science / Mechanism of ATP-dependent promoter melting by transcription factor IIH by Kim (2000)
  47. 10.1126/science.1207699 / Science / Yeast Rrn7 and human TAF1B are TFIIB-related RNA polymerase I general transcription factors by Knutson (2011)
  48. 10.1073/pnas.0704138104 / Proc. Natl. Acad. Sci. USA / The molecular basis of eukaryotic transcription by Kornberg (2007)
  49. 10.1038/nature08548 / Nature / RNA polymerase II-TFIIB structure and mechanism of transcription initiation by Kostrewa (2009)
  50. 10.1016/j.cell.2007.10.051 / Cell / Functional architecture of RNA polymerase I by Kuhn (2007)
  51. 10.1073/pnas.95.17.9767 / Proc. Natl. Acad. Sci. USA / Promoter-proximal stalling results from the inability to recruit transcription factor IIH to the transcription complex and is a regulated event by Kumar (1998)
  52. 10.1074/jbc.271.35.21062 / J. Biol. Chem. / RRN11 encodes the third subunit of the complex containing Rrn6p and Rrn7p that is essential for the initiation of rDNA transcription by yeast RNA polymerase I by Lalo (1996)
  53. 10.1038/sj.emboj.7600915 / EMBO J. / A subcomplex of RNA polymerase III subunits involved in transcription termination and reinitiation by Landrieux (2006)
  54. 10.1038/nsmb1143 / Nat. Struct. Mol. Biol. / Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20 by Larivière (2006)
  55. 10.1038/nsmb.1996 / Nat. Struct. Mol. Biol. / Structure-function analysis of hRPC62 provides insights into RNA polymerase III transcription initiation by Lefèvre (2011)
  56. 10.1126/science.8303296 / Science / RNA polymerase II initiation factor interactions and transcription start site selection by Li (1994)
  57. 10.1128/MCB.16.11.6436 / Mol. Cell. Biol. / A novel 66-kilodalton protein complexes with Rrn6, Rrn7, and TATA-binding protein to promote polymerase I transcription initiation in Saccharomyces cerevisiae by Lin (1996)
  58. 10.1038/nsmb949 / Nat. Struct. Mol. Biol. / TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape by Lin (2005)
  59. 10.1126/science.170.3956.447 / Science / Specific inhibition of nuclear RNA polymerase II by alpha-amanitin by Lindell (1970)
  60. 10.1126/science.1182015 / Science / Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism by Liu (2010)
  61. 10.1016/0092-8674(92)90350-L / Cell / PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB by López-De-León (1992)
  62. 10.1073/pnas.84.24.8839 / Proc. Natl. Acad. Sci. USA / Accurate initiation at RNA polymerase II promoters in extracts from Saccharomyces cerevisiae by Lue (1987)
  63. 10.1073/pnas.77.7.3855 / Proc. Natl. Acad. Sci. USA / DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract by Manley (1980)
  64. 10.1101/gad.8.5.515 / Genes Dev. / Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: a model for promoter clearance by Maxon (1994)
  65. 10.1074/jbc.M307874200 / J. Biol. Chem. / An extended winged helix domain in general transcription factor E/IIE alpha by Meinhart (2003)
  66. 10.1073/pnas.080063997 / Proc. Natl. Acad. Sci. USA / RNA polymerase I transcription factor Rrn3 is functionally conserved between yeast and human by Moorefield (2000)
  67. 10.1016/j.gde.2010.06.004 / Curr. Opin. Genet. Dev. / Developmental regulation of transcription initiation: more than just changing the actors by Müller (2010)
  68. 10.1146/annurev.biochem.70.1.475 / Annu. Rev. Biochem. / Transcriptional coactivator complexes by Näär (2001)
  69. 10.1126/science.1207656 / Science / TAF1B is a TFIIB-like component of the basal transcription machinery for RNA polymerase I by Naidu (2011)
  70. 10.1074/jbc.M611674200 / J. Biol. Chem. / The RPB7 orthologue E' is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation by Naji (2007)
  71. 10.1038/377119a0 / Nature / Crystal structure of a TFIIB-TBP-TATA-element ternary complex by Nikolov (1995)
  72. 10.1038/368160a0 / Nature / Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formation by Ohkuma (1994)
  73. 10.1128/MCB.15.9.4856 / Mol. Cell. Biol. / Analysis of the role of TFIIE in basal transcription and TFIIH-mediated carboxy-terminal domain phosphorylation through structure-function studies of TFIIE-alpha by Ohkuma (1995)
  74. 10.1093/emboj/19.6.1346 / EMBO J. / Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface by Okuda (2000)
  75. 10.1101/gad.10.21.2657 / Genes Dev. / The general transcription factors of RNA polymerase II by Orphanides (1996)
  76. 10.1073/pnas.232580799 / Proc. Natl. Acad. Sci. USA / The A14-A43 heterodimer subunit in yeast RNA pol I and their relationship to Rpb4-Rpb7 pol II subunits by Peyroche (2002)
  77. 10.1038/nature10799 / Nature / Genome-wide structure and organization of eukaryotic pre-initiation complexes by Rhee (2012)
  78. 10.1016/0968-0004(96)10050-5 / Trends Biochem. Sci. / The role of general initiation factors in transcription by RNA polymerase II by Roeder (1996)
  79. 10.1038/224234a0 / Nature / Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms by Roeder (1969)
  80. 10.1073/pnas.65.3.675 / Proc. Natl. Acad. Sci. USA / Specific nucleolar and nucleoplasmic RNA polymerases by Roeder (1970)
  81. 10.1074/jbc.M111.222273 / J. Biol. Chem. / Evolution of two modes of intrinsic RNA polymerase transcript cleavage by Ruan (2011)
  82. 10.1101/gad.1018902 / Genes Dev. / Recruitment of RNA polymerase III to its target promoters by Schramm (2002)
  83. 10.1515/znb-1969-1211 / Z. Naturforsch. B / Alpha-amanitin, a specific inhibitor of transcription by mammalian RNA-polymerase by Seifart (1969)
  84. 10.1128/MCB.21.7.2292-2297.2001 / Mol. Cell. Biol. / Role of TATA binding protein (TBP) in yeast ribosomal dna transcription by RNA polymerase I: defects in the dual functions of transcription factor UAF cannot be suppressed by TBP by Siddiqi (2001)
  85. 10.1126/science.1200188 / Science / Direct interaction of RNA polymerase II and mediator required for transcription in vivo by Soutourina (2011)
  86. 10.1101/gad.10.20.2551 / Genes Dev. / The role of TBP in rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae: TBP is required for upstream activation factor-dependent recruitment of core factor by Steffan (1996)
  87. 10.1074/jbc.M508253200 / J. Biol. Chem. / Mediator as a general transcription factor by Takagi (2006)
  88. 10.1016/j.molcel.2006.06.007 / Mol. Cell / Head module control of mediator interactions by Takagi (2006)
  89. 10.1074/jbc.M109.030486 / J. Biol. Chem. / Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB by Thompson (2009)
  90. 10.1016/j.cell.2010.09.002 / Cell / Molecular basis of RNA polymerase III transcription repression by Maf1 by Vannini (2010)
  91. 10.1073/pnas.92.15.7026 / Proc. Natl. Acad. Sci. USA / Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains by Wang (1995)
  92. 10.1101/gad.11.10.1315 / Genes Dev. / Three human RNA polymerase III-specific subunits form a subcomplex with a selective function in specific transcription initiation by Wang (1997)
  93. {'key': '10.1016/j.molcel.2012.01.023_bib94', 'article-title': 'SAGA function in tissue-specific gene expression', 'author': 'Weake', 'year': '2011', 'journal-title': 'Trends Cell Biol.'} / Trends Cell Biol. / SAGA function in tissue-specific gene expression by Weake (2011)
  94. 10.1016/0092-8674(79)90065-5 / Cell / Selective and accurate initiation of transcription at the Ad2 major late promotor in a soluble system dependent on purified RNA polymerase II and DNA by Weil (1979)
  95. 10.1073/pnas.71.5.1790 / Proc. Natl. Acad. Sci. USA / Role of DNA-dependent RNA polymerase 3 in the transcription of the tRNA and 5S RNA genes by Weinmann (1974)
  96. 10.1128/MCB.05151-11 / Mol. Cell. Biol. / The TFIIF-like Rpc37/53 dimer lies at the center of a protein network to connect TFIIIC, Bdp1, and the RNA polymerase III active center by Wu (2011)
  97. 10.1002/j.1460-2075.1996.tb00770.x / EMBO J. / RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template by Yamamoto (1996)
  98. 10.1074/jbc.274.50.35668 / J. Biol. Chem. / Dual roles for transcription factor IIF in promoter escape by RNA polymerase II by Yan (1999)
  99. 10.1073/pnas.68.11.2861 / Proc. Natl. Acad. Sci. USA / Products of RNA polymerases in HeLa cell nuclei by Zylber (1971)
Dates
Type When
Created 13 years, 6 months ago (Feb. 23, 2012, 2:40 p.m.)
Deposited 2 years, 6 months ago (Feb. 13, 2023, 8:51 p.m.)
Indexed 3 weeks, 5 days ago (July 28, 2025, 6:02 p.m.)
Issued 13 years, 6 months ago (Feb. 1, 2012)
Published 13 years, 6 months ago (Feb. 1, 2012)
Published Print 13 years, 6 months ago (Feb. 1, 2012)
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@article{Vannini_2012, title={Conservation between the RNA Polymerase I, II, and III Transcription Initiation Machineries}, volume={45}, ISSN={1097-2765}, url={http://dx.doi.org/10.1016/j.molcel.2012.01.023}, DOI={10.1016/j.molcel.2012.01.023}, number={4}, journal={Molecular Cell}, publisher={Elsevier BV}, author={Vannini, Alessandro and Cramer, Patrick}, year={2012}, month=feb, pages={439–446} }