Crossref journal-article
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Molecular Cell (78)
Bibliography

Shachrai, I., Zaslaver, A., Alon, U., & Dekel, E. (2010). Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth. Molecular Cell, 38(5), 758–767.

Authors 4
  1. Irit Shachrai (first)
  2. Alon Zaslaver (additional)
  3. Uri Alon (additional)
  4. Erez Dekel (additional)
References 44 Referenced 193
  1. {'key': '10.1016/j.molcel.2010.04.015_bib1', 'series-title': 'An Introduction to Systems Biology: Design Principles of Biological Circuits', 'author': 'Alon', 'year': '2006'} / An Introduction to Systems Biology: Design Principles of Biological Circuits by Alon (2006)
  2. 10.1128/JB.137.3.1100-1110.1979 / J. Bacteriol. / Cloning the spoT gene of Escherichia coli: identification of the spoT gene product by An (1979)
  3. 10.1007/BF01739257 / J. Mol. Evol. / Selective disadvantage of non-functional protein synthesis in Escherichia coli by Andrews (1976)
  4. 10.1016/j.tim.2005.11.005 / Trends Microbiol. / Adaptive evolution by optimizing expression levels in different environments by Babu (2006)
  5. {'key': '10.1016/j.molcel.2010.04.015_bib5', 'series-title': 'Escherichia coli and Salmonella: Cellular and Molecular Biology', 'first-page': '1553', 'article-title': 'Modulation of chemical composition and other parameters of the cell by growth rate', 'author': 'Bremer', 'year': '1996'} / Escherichia coli and Salmonella: Cellular and Molecular Biology / Modulation of chemical composition and other parameters of the cell by growth rate by Bremer (1996)
  6. 10.1016/j.biochi.2007.10.008 / Biochimie / Feedback control of ribosome function in Escherichia coli by Bremer (2008)
  7. 10.1016/0167-4781(95)00042-F / Biochim. Biophys. Acta / Guanosine tetraphosphate as a global regulator of bacterial RNA synthesis: a model involving RNA polymerase pausing and queuing by Bremer (1995)
  8. {'key': '10.1016/j.molcel.2010.04.015_bib8', 'series-title': 'Genetics of Translation: New Approaches', 'first-page': '14', 'article-title': 'Control of RNA synthesis in bacteria', 'author': 'Bremer', 'year': '1987'} / Genetics of Translation: New Approaches / Control of RNA synthesis in bacteria by Bremer (1987)
  9. 10.1073/pnas.0602119103 / Proc. Natl. Acad. Sci. USA / Autogenous and nonautogenous control of response in a genetic network by Camas (2006)
  10. 10.1038/221838a0 / Nature / Two compounds implicated in the function of the RC gene of Escherichia coli by Cashel (1969)
  11. 10.1016/S0021-9258(18)63153-9 / J. Biol. Chem. / The control of ribonucleic acid synthesis in Escherichia coli. V. Characterization of a nucleotide associated with the stringent response by Cashel (1970)
  12. {'key': '10.1016/j.molcel.2010.04.015_bib12', 'series-title': 'Escherichia coli and Salmonella: Cellular and Molecular Biology', 'first-page': '1458', 'article-title': 'The stringent response', 'author': 'Cashel', 'year': '1996'} / Escherichia coli and Salmonella: Cellular and Molecular Biology / The stringent response by Cashel (1996)
  13. 10.1016/0378-1119(95)00685-0 / Gene / FACS-optimized mutants of the green fluorescent protein (GFP) by Cormack (1996)
  14. 10.1073/pnas.120163297 / Proc. Natl. Acad. Sci. USA / One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products by Datsenko (2000)
  15. 10.1038/nature03842 / Nature / Optimality and evolutionary tuning of the expression level of a protein by Dekel (2005)
  16. 10.1088/1478-3975/2/2/001 / Phys. Biol. / Environmental selection of the feed-forward loop circuit in gene-regulation networks by Dekel (2005)
  17. 10.1128/MMBR.68.4.639-668.2004 / Microbiol. Mol. Biol. Rev. / Control of rRNA synthesis in Escherichia coli: a systems biology approach by Dennis (2004)
  18. 10.1128/JB.00128-09 / J. Bacteriol. / Varying rate of RNA chain elongation during rrn transcription in Escherichia coli by Dennis (2009)
  19. 10.1128/jb.177.6.1497-1504.1995 / J. Bacteriol. / Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction by Dong (1995)
  20. 10.1006/jmbi.1996.0428 / J. Mol. Biol. / Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates by Dong (1996)
  21. 10.1016/S0021-9258(19)67695-7 / J. Biol. Chem. / Escherichia coli ppGpp synthetase II activity requires spoT by Hernandez (1991)
  22. 10.1016/0006-3002(62)90941-1 / Biochim. Biophys. Acta / Isolation and properties of bacteria capable of high rates of beta-galactosidase synthesis by Horiuchi (1962)
  23. 10.1088/1478-3975/4/4/001 / Phys. Biol. / Cost-benefit theory and optimal design of gene regulation functions by Kalisky (2007)
  24. 10.1016/j.molcel.2008.01.021 / Mol. Cell / Diverse two-dimensional input functions control bacterial sugar genes by Kaplan (2008)
  25. 10.1007/BF02102321 / J. Mol. Evol. / The protein burden of lac operon products by Koch (1983)
  26. 10.1139/m88-074 / Can. J. Microbiol. / Why can't a cell grow infinitely fast? by Koch (1988)
  27. 10.1016/0092-8674(74)90151-2 / Cell / spoT, a new genetic locus involved in the stringent response in E. coli by Laffler (1974)
  28. 10.1073/pnas.0901620106 / Proc. Natl. Acad. Sci. USA / The cost of gene expression underlies a fitness trade-off in yeast by Lang (2009)
  29. 10.1093/nar/25.6.1203 / Nucleic Acids Res. / Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements by Lutz (1997)
  30. {'key': '10.1016/j.molcel.2010.04.015_bib30', 'series-title': 'Control of macromolecular synthesis: a study of DNA, RNA and protein synthesis in bacteria', 'author': 'Maaløe', 'year': '1966'} / Control of macromolecular synthesis: a study of DNA, RNA and protein synthesis in bacteria by Maaløe (1966)
  31. 10.1128/MMBR.55.2.316-333.1991 / Microbiol. Rev. / Growth rate of Escherichia coli by Marr (1991)
  32. 10.1038/nature08112 / Nature / Adaptive prediction of environmental changes by microorganisms by Mitchell (2009)
  33. {'key': '10.1016/j.molcel.2010.04.015_bib33', 'first-page': '213', 'article-title': 'Effects of carriage and expression of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli K12', 'volume': '6', 'author': 'Nguyen', 'year': '1989', 'journal-title': 'Mol. Biol. Evol.'} / Mol. Biol. Evol. / Effects of carriage and expression of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli K12 by Nguyen (1989)
  34. 10.1073/pnas.43.7.553 / Proc. Natl. Acad. Sci. USA / Enzyme induction as an all-or-none phenomenon by Novick (1957)
  35. 10.1146/annurev.genet.38.072902.091347 / Annu. Rev. Genet. / rRNA transcription in Escherichia coli by Paul (2004)
  36. 10.1073/pnas.152046799 / Proc. Natl. Acad. Sci. USA / Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics by Ronen (2002)
  37. 10.1128/JB.01368-07 / J. Bacteriol. / Escherichia coli physiology in Luria-Bertani broth by Sezonov (2007)
  38. 10.1534/genetics.107.085399 / Genetics / The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products by Stoebel (2008)
  39. 10.1126/science.1154456 / Science / Predictive behavior within microbial genetic networks by Tagkopoulos (2008)
  40. 10.1371/journal.pcbi.1000125 / PLoS Comput. Biol. / Regulatory control and the costs and benefits of biochemical noise by Tănase-Nicola (2008)
  41. 10.1006/jmbi.1993.1319 / J. Mol. Biol. / Synthesis of proteins in Escherichia coli is limited by the concentration of free ribosomes. Expression from reporter genes does not always reflect functional mRNA levels by Vind (1993)
  42. 10.1038/ng1348 / Nat. Genet. / Just-in-time transcription program in metabolic pathways by Zaslaver (2004)
  43. 10.1038/nmeth895 / Nat. Methods / A comprehensive library of fluorescent transcriptional reporters for Escherichia coli by Zaslaver (2006)
  44. 10.1088/1478-3975/3/3/003 / Phys. Biol. / Optimal gene partition into operons correlates with gene functional order by Zaslaver (2006)
Dates
Type When
Created 15 years, 4 months ago (April 30, 2010, 5:02 a.m.)
Deposited 3 years, 10 months ago (Oct. 26, 2021, 8:16 p.m.)
Indexed 1 month, 1 week ago (July 26, 2025, 4:41 a.m.)
Issued 15 years, 3 months ago (June 1, 2010)
Published 15 years, 3 months ago (June 1, 2010)
Published Print 15 years, 3 months ago (June 1, 2010)
Funders 0

None

@article{Shachrai_2010, title={Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth}, volume={38}, ISSN={1097-2765}, url={http://dx.doi.org/10.1016/j.molcel.2010.04.015}, DOI={10.1016/j.molcel.2010.04.015}, number={5}, journal={Molecular Cell}, publisher={Elsevier BV}, author={Shachrai, Irit and Zaslaver, Alon and Alon, Uri and Dekel, Erez}, year={2010}, month=jun, pages={758–767} }