DOI: 10.1016/j.molcel.2004.09.028. Endogenous trans-Acting siRNAs Regulate the Accumulation of Arabidopsis mRNAs

Endogenous trans-Acting siRNAs Regulate the Accumulation of Arabidopsis mRNAs

10.1016/j.molcel.2004.09.028

Crossref journal-article

Elsevier BV

Molecular Cell (78)

Bibliography

Vazquez, F., Vaucheret, H., Rajagopalan, R., Lepers, C., Gasciolli, V., Mallory, A. C., Hilbert, J.-L., Bartel, D. P., & CrÃ©tÃ©, P. (2004). Endogenous trans-Acting siRNAs Regulate the Accumulation of Arabidopsis mRNAs. Molecular Cell, 16(1), 69â79.

Authors 9

Franck Vazquez (first)
Hervé Vaucheret (additional)
Ramya Rajagopalan (additional)
Christelle Lepers (additional)
Virginie Gasciolli (additional)
Allison C. Mallory (additional)
Jean-Louis Hilbert (additional)
David P. Bartel (additional)
Patrice Crété (additional)

References 61 Referenced 651

10.1126/science.1086391 / Science / Genome-wide insertional mutagenesis of Arabidopsis thaliana by Alonso (2003)
10.1016/S0960-9822(03)00287-2 / Curr. Biol / MicroRNAs and other tiny endogenous RNAs in C. elegans by Ambros (2003)
10.1016/S0960-9822(01)00299-8 / Curr. Biol / Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline by Aravin (2001)
10.1105/tpc.016238 / Plant Cell / Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes by Aukerman (2003)
10.1016/S0092-8674(04)00045-5 / Cell / MicroRNAs by Bartel (2004)
10.1104/pp.103.023630 / Plant Physiol / MicroRNAs by Bartel (2003)
10.1016/S0960-9822(02)00792-3 / Curr. Biol / A branched pathway for transgene-induced RNA silencing in plants by Beclin (2002)
10.1093/emboj/17.1.170 / EMBO J / AGO1 defines a novel locus of Arabidopsis controlling leaf development by Bohmert (1998)
10.1093/genetics/153.3.1245 / Genetics / RNA interference can target pre-mRNA by Bosher (1999)
10.1016/S0960-9822(03)00293-8 / Curr. Biol / Arabidopsis HEN1 by Boutet (2003)
10.1093/nar/gkg707 / Nucleic Acids Res / Developmental defects by antisense-mediated inactivation of micro-RNAs 2 and 13 in Drosophila and the identification of putative target genes by Boutla (2003)
10.1016/S0092-8674(03)00231-9 / Cell / bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila by Brennecke (2003)
10.1101/gad.1026102 / Genes Dev / The Argonaute family by Carmell (2002)
10.1126/science.1085242 / Science / Role of microRNAs in plant and animal development by Carrington (2003)
10.1126/science.1088060 / Science / microRNA as a translational repressor of APETALA2 in Arabidopsis flower development by Chen (2004)
10.1242/dev.129.5.1085 / Development / HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower by Chen (2002)
10.1016/S0092-8674(00)80864-8 / Cell / An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus by Dalmay (2000)
10.1101/gad.862301 / Genes Dev / RNA interference is mediated by 21- and 22-nucleotide RNAs by Elbashir (2001)
10.1105/tpc.10.10.1747 / Plant Cell / Arabidopsis mutants impaired in cosuppression by Elmayan (1998)
10.1016/j.cub.2003.09.035 / Curr. Biol / Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes by Emery (2003)
10.1242/jcs.00838 / J. Cell Sci / The small RNA world by Finnegan (2003)
10.1093/emboj/cdf464 / EMBO J / Two classes of short interfering RNA in RNA silencing by Hamilton (2002)
10.1073/pnas.0307969100 / Proc. Natl. Acad. Sci. USA / The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation by Han (2004)
10.1038/nrg1379 / Nat. Rev. Genet / MicroRNAs by He (2004)
10.1016/j.cub.2003.09.004 / Curr. Biol / The Arabidopsis heterochronic gene ZIPPY is an ARGONAUTE family member by Hunter (2003)
10.1242/dev.126.23.5231 / Development / Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems by Jacobsen (1999)
10.1038/nature02255 / Nature / A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans by Johnston (2003)
10.1016/j.molcel.2004.05.027 / Mol. Cell / Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA by Jones-Rhoades (2004)
10.1016/S1534-5807(03)00025-X / Dev. Cell / P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function by Kasschau (2003)
10.1016/S0092-8674(03)00801-8 / Cell / Functional siRNAs and miRNAs exhibit strand bias by Khvorova (2003)
10.1038/nature02366 / Nature / Spatially restricted microRNA directs leaf polarity through ARGONAUTE1 by Kidner (2004)
10.1126/science.1065062 / Science / An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans by Lau (2001)
10.1016/0092-8674(93)90529-Y / Cell / The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 by Lee (1993)
10.1101/gad.1074403 / Genes Dev / The microRNAs of Caenorhabditis elegans by Lim (2003)
10.1105/tpc.003210 / Plant Cell / Endogenous and silencing-associated small RNAs in plants by Llave (2002)
10.1126/science.1076311 / Science / Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA by Llave (2002)
10.1105/tpc.12.12.2351 / Plant Cell / A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin by Lu (2000)
10.1016/j.pbi.2004.01.006 / Curr. Opin. Plant Biol / MicroRNAs by Mallory (2004)
10.1016/j.cub.2004.06.022 / Curr. Biol / MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs by Mallory (2004)
10.1038/sj.emboj.7600340 / EMBO J / MicroRNA control of PHABULOSA in leaf development by Mallory (2004)
10.1105/tpc.010358 / Plant Cell / Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance by Morel (2002)
10.1016/S0092-8674(00)81906-6 / Cell / The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA by Moss (1997)
10.1016/S0092-8674(00)80863-6 / Cell / Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance by Mourrain (2000)
10.1111/j.1365-313X.2004.02103.x / Plant J / Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants by Muangsan (2004)
10.1038/nature01958 / Nature / Control of leaf morphogenesis by microRNAs by Palatnik (2003)
10.1016/S0960-9822(02)01017-5 / Curr. Biol / CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana by Park (2002)
10.1038/35002607 / Nature / The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans by Reinhart (2000)
10.1101/gad.1004402 / Genes Dev / MicroRNAs in plants by Reinhart (2002)
10.1016/S0092-8674(02)00863-2 / Cell / Prediction of plant microRNA targets by Rhoades (2002)
10.1093/nar/30.1.94 / Nucleic Acids Res / Flagdb/fst by Samson (2002)
10.1016/S1360-1385(02)02355-5 / Trends Plant Sci / DICER-LIKE1 by Schauer (2002)
10.1016/S0092-8674(03)00759-1 / Cell / Asymmetry in the assembly of the RNAi enzyme complex by Schwarz (2003)
Sunkar, R., and Zhu, J-K. (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell online (www.plantcell.org/cgi/doi/10.1105/tpc.104.022830). (10.1105/tpc.104.022830)
10.1101/gad.1048103 / Genes Dev / A biochemical framework for RNA silencing in plants by Tang (2003)
10.1101/gad.1201404 / Genes Dev / The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development by Vaucheret (2004)
10.1016/j.cub.2004.01.035 / Curr. Biol / The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing by Vazquez (2004)
10.1016/0092-8674(93)90530-4 / Cell / Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans by Wightman (1993)
10.1016/S0960-9822(03)00281-1 / Curr. Biol / Negative feedback regulation of Dicer-like1 in Arabidopsis by microRNA-guided mRNA degradation by Xie (2003)
Xie, Z., Johansen, L.K., Gustafson, A.M., Kasschau, K.D., Lellis, A.D., Zilberman, D., Jacobsen, S.E., and Carrington, J.C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2(5): e104 DOI:10.1371/journal.pbio.0020104. (10.1371/journal.pbio.0020104)
10.1016/S0960-9822(03)00250-1 / Curr. Biol / The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism by Xu (2003)
10.1126/science.1079695 / Science / ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation by Zilberman (2003)

Dates

Type	When
Created	20 years, 10 months ago (Oct. 12, 2004, 1:34 p.m.)
Deposited	2 years, 6 months ago (Feb. 13, 2023, 8:18 p.m.)
Indexed	1 week ago (Aug. 29, 2025, 5:49 a.m.)
Issued	20 years, 11 months ago (Oct. 1, 2004)
Published	20 years, 11 months ago (Oct. 1, 2004)
Published Print	20 years, 11 months ago (Oct. 1, 2004)

Funders 0

None

BibTeX

@article{Vazquez_2004, title={Endogenous trans-Acting siRNAs Regulate the Accumulation of Arabidopsis mRNAs}, volume={16}, ISSN={1097-2765}, url={http://dx.doi.org/10.1016/j.molcel.2004.09.028}, DOI={10.1016/j.molcel.2004.09.028}, number={1}, journal={Molecular Cell}, publisher={Elsevier BV}, author={Vazquez, Franck and Vaucheret, Hervé and Rajagopalan, Ramya and Lepers, Christelle and Gasciolli, Virginie and Mallory, Allison C. and Hilbert, Jean-Louis and Bartel, David P. and Crété, Patrice}, year={2004}, month=oct, pages={69–79} }

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      "DOI": "10.1242/jcs.00838",
      "article-title": "The small RNA world",
      "volume": "116",
      "author": "Finnegan",
      "year": "2003",
      "journal-title": "J. Cell Sci"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB22",
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      "first-page": "4671",
      "DOI": "10.1093/emboj/cdf464",
      "article-title": "Two classes of short interfering RNA in RNA silencing",
      "volume": "21",
      "author": "Hamilton",
      "year": "2002",
      "journal-title": "EMBO J"
    },
    {
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      "volume": "101",
      "author": "Han",
      "year": "2004",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
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      "first-page": "522",
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      "article-title": "MicroRNAs",
      "volume": "5",
      "author": "He",
      "year": "2004",
      "journal-title": "Nat. Rev. Genet"
    },
    {
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      "first-page": "1734",
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      "article-title": "The Arabidopsis heterochronic gene ZIPPY is an ARGONAUTE family member",
      "volume": "13",
      "author": "Hunter",
      "year": "2003",
      "journal-title": "Curr. Biol"
    },
    {
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      "first-page": "5231",
      "DOI": "10.1242/dev.126.23.5231",
      "article-title": "Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems",
      "volume": "126",
      "author": "Jacobsen",
      "year": "1999",
      "journal-title": "Development"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB27",
      "doi-asserted-by": "crossref",
      "first-page": "845",
      "DOI": "10.1038/nature02255",
      "article-title": "A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans",
      "volume": "426",
      "author": "Johnston",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
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      "first-page": "787",
      "DOI": "10.1016/j.molcel.2004.05.027",
      "article-title": "Computational identification of plant MicroRNAs and their targets, including a stress-induced miRNA",
      "volume": "14",
      "author": "Jones-Rhoades",
      "year": "2004",
      "journal-title": "Mol. Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB29",
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      "first-page": "205",
      "DOI": "10.1016/S1534-5807(03)00025-X",
      "article-title": "P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function",
      "volume": "4",
      "author": "Kasschau",
      "year": "2003",
      "journal-title": "Dev. Cell"
    },
    {
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      "first-page": "209",
      "DOI": "10.1016/S0092-8674(03)00801-8",
      "article-title": "Functional siRNAs and miRNAs exhibit strand bias",
      "volume": "115",
      "author": "Khvorova",
      "year": "2003",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB31",
      "doi-asserted-by": "crossref",
      "first-page": "81",
      "DOI": "10.1038/nature02366",
      "article-title": "Spatially restricted microRNA directs leaf polarity through ARGONAUTE1",
      "volume": "428",
      "author": "Kidner",
      "year": "2004",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB32",
      "doi-asserted-by": "crossref",
      "first-page": "858",
      "DOI": "10.1126/science.1065062",
      "article-title": "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans",
      "volume": "294",
      "author": "Lau",
      "year": "2001",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB33",
      "doi-asserted-by": "crossref",
      "first-page": "843",
      "DOI": "10.1016/0092-8674(93)90529-Y",
      "article-title": "The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14",
      "volume": "75",
      "author": "Lee",
      "year": "1993",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB34",
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      "first-page": "991",
      "DOI": "10.1101/gad.1074403",
      "article-title": "The microRNAs of Caenorhabditis elegans",
      "volume": "17",
      "author": "Lim",
      "year": "2003",
      "journal-title": "Genes Dev"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB35",
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      "first-page": "1605",
      "DOI": "10.1105/tpc.003210",
      "article-title": "Endogenous and silencing-associated small RNAs in plants",
      "volume": "14",
      "author": "Llave",
      "year": "2002",
      "journal-title": "Plant Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB36",
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      "first-page": "2053",
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      "article-title": "Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA",
      "volume": "297",
      "author": "Llave",
      "year": "2002",
      "journal-title": "Science"
    },
    {
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      "volume": "12",
      "author": "Lu",
      "year": "2000",
      "journal-title": "Plant Cell"
    },
    {
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      "first-page": "120",
      "DOI": "10.1016/j.pbi.2004.01.006",
      "article-title": "MicroRNAs",
      "volume": "7",
      "author": "Mallory",
      "year": "2004",
      "journal-title": "Curr. Opin. Plant Biol"
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      "first-page": "1035",
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      "volume": "14",
      "author": "Mallory",
      "year": "2004",
      "journal-title": "Curr. Biol"
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    {
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      "first-page": "3356",
      "DOI": "10.1038/sj.emboj.7600340",
      "article-title": "MicroRNA control of PHABULOSA in leaf development",
      "volume": "23",
      "author": "Mallory",
      "year": "2004",
      "journal-title": "EMBO J"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB41",
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      "first-page": "629",
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      "article-title": "Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance",
      "volume": "14",
      "author": "Morel",
      "year": "2002",
      "journal-title": "Plant Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB42",
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      "first-page": "637",
      "DOI": "10.1016/S0092-8674(00)81906-6",
      "article-title": "The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA",
      "volume": "88",
      "author": "Moss",
      "year": "1997",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB43",
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      "first-page": "533",
      "DOI": "10.1016/S0092-8674(00)80863-6",
      "article-title": "Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance",
      "volume": "101",
      "author": "Mourrain",
      "year": "2000",
      "journal-title": "Cell"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB44",
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      "first-page": "1004",
      "DOI": "10.1111/j.1365-313X.2004.02103.x",
      "article-title": "Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants",
      "volume": "6",
      "author": "Muangsan",
      "year": "2004",
      "journal-title": "Plant J"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB45",
      "doi-asserted-by": "crossref",
      "first-page": "257",
      "DOI": "10.1038/nature01958",
      "article-title": "Control of leaf morphogenesis by microRNAs",
      "volume": "425",
      "author": "Palatnik",
      "year": "2003",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB46",
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      "first-page": "1484",
      "DOI": "10.1016/S0960-9822(02)01017-5",
      "article-title": "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana",
      "volume": "12",
      "author": "Park",
      "year": "2002",
      "journal-title": "Curr. Biol"
    },
    {
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      "first-page": "901",
      "DOI": "10.1038/35002607",
      "article-title": "The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans",
      "volume": "403",
      "author": "Reinhart",
      "year": "2000",
      "journal-title": "Nature"
    },
    {
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      "first-page": "1616",
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      "article-title": "MicroRNAs in plants",
      "volume": "16",
      "author": "Reinhart",
      "year": "2002",
      "journal-title": "Genes Dev"
    },
    {
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      "first-page": "513",
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      "article-title": "Prediction of plant microRNA targets",
      "volume": "110",
      "author": "Rhoades",
      "year": "2002",
      "journal-title": "Cell"
    },
    {
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      "first-page": "94",
      "DOI": "10.1093/nar/30.1.94",
      "article-title": "Flagdb/fst",
      "volume": "30",
      "author": "Samson",
      "year": "2002",
      "journal-title": "Nucleic Acids Res"
    },
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      "first-page": "487",
      "DOI": "10.1016/S1360-1385(02)02355-5",
      "article-title": "DICER-LIKE1",
      "volume": "7",
      "author": "Schauer",
      "year": "2002",
      "journal-title": "Trends Plant Sci"
    },
    {
      "key": "10.1016/j.molcel.2004.09.028_BIB52",
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      "first-page": "199",
      "DOI": "10.1016/S0092-8674(03)00759-1",
      "article-title": "Asymmetry in the assembly of the RNAi enzyme complex",
      "volume": "2",
      "author": "Schwarz",
      "year": "2003",
      "journal-title": "Cell"
    },
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      "key": "10.1016/j.molcel.2004.09.028_BIB53",
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      "unstructured": "Sunkar, R., and Zhu, J-K. (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell online (www.plantcell.org/cgi/doi/10.1105/tpc.104.022830).",
      "DOI": "10.1105/tpc.104.022830"
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    {
      "key": "10.1016/j.molcel.2004.09.028_BIB54",
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      "first-page": "49",
      "DOI": "10.1101/gad.1048103",
      "article-title": "A biochemical framework for RNA silencing in plants",
      "volume": "17",
      "author": "Tang",
      "year": "2003",
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    },
    {
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      "volume": "18",
      "author": "Vaucheret",
      "year": "2004",
      "journal-title": "Genes Dev"
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      "DOI": "10.1016/j.cub.2004.01.035",
      "article-title": "The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing",
      "volume": "14",
      "author": "Vazquez",
      "year": "2004",
      "journal-title": "Curr. Biol"
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      "DOI": "10.1016/0092-8674(93)90530-4",
      "article-title": "Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans",
      "volume": "75",
      "author": "Wightman",
      "year": "1993",
      "journal-title": "Cell"
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      "volume": "13",
      "author": "Xie",
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      "DOI": "10.1371/journal.pbio.0020104"
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