DOI: 10.1016/j.jsb.2020.107528. Cryo-FIB-SEM as a promising tool for localizing proteins in 3D

Cryo-FIB-SEM as a promising tool for localizing proteins in 3D

10.1016/j.jsb.2020.107528

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Spehner, D., Steyer, A. M., Bertinetti, L., Orlov, I., Benoit, L., Pernet-Gallay, K., Schertel, A., & Schultz, P. (2020). Cryo-FIB-SEM as a promising tool for localizing proteins in 3D. Journal of Structural Biology, 211(1), 107528.

Authors 8

Daniele Spehner (first)
Anna M. Steyer (additional)
Luca Bertinetti (additional)
Igor Orlov (additional)
Lucas Benoit (additional)
Karin Pernet-Gallay (additional)
Andreas Schertel (additional)
Patrick Schultz (additional)

References 28 Referenced 63

10.1038/sj.emboj.7600366 / EMBO J.. / Cryo-electron microscopy of vitreous sections by Al-Amoudi (2004)
10.1039/C4FD00240G / Faraday Discuss.. / Biologically controlled synthesis and assembly of magnetite nanoparticles by Bennet (2015)
10.1038/s41592-019-0582-9 / Nat. Methods / ilastik: interactive machine learning for (bio)image analysis by Berg (2019)
10.1007/978-1-62703-776-1_10 / Methods Mol. Biol. / Cryo-electron microscopy of vitreous sections by Chlanda (2014)
10.1002/anie.201804280 / Angew. Chem. Int. Ed. Engl. / On the development of electron cryo-microscopy (Nobel Lecture) by Dubochet (2018)
10.1017/S0033583500004297 / Q. Rev. Biophys. / Cryo-electron microscopy of vitrified specimens by Dubochet (1988)
10.1093/nar/gkx759 / Nucl. Acids Res. / Nuclear speckles: molecular organization, biological function and role in disease by Galganski (2017)
10.1088/1361-6528/aaff0a / Nanotechnology / Synthesis and biological evaluation of 2.4 nm thiolate-protected gold nanoparticles conjugated to Cetuximab for targeting glioblastoma cancer cells via the EGFR by Groysbeck (2019)
10.1111/j.1365-2818.2007.01775.x / J. Microsc.-Oxford / A technique for improved focused ion beam milling of cryo-prepared life science specimens by Hayles (2007)
10.1016/j.jsb.2019.04.009 / J. Struct. Biol. / Anhydrous beta-guanine crystals in a marine dinoflagellate: structure and suggested function by Jantschke (2019)
10.3389/fnana.2018.00059 / Front. Neuroanat. / NeuroMorph: a software toolset for 3D analysis of neurite morphology and connectivity by Jorstad (2018)
Krull, A., Buchholz, T.-O., Jug, F., 2019. Noise2Void-LearningDenoising from Single Noisy Images. arXiv.org 1811.10980v2. (10.1109/CVPR.2019.00223)
10.1006/jsbi.1996.0013 / J. Struct. Biol. / Computer visualization of three-dimensional image data using IMOD by Kremer (1996)
10.21105/joss.01237 / J. Open Source Software / A Python package for wavelet analysis by Lee (2019)
10.1038/nmeth1014 / Nat. Methods / Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy by Marko (2007)
10.1364/OE.17.008567 / Opt. Express / Stripe and ring artifact removal with combined wavelet - Fourier filtering by Munch (2009)
10.1038/srep08324 / Sci. Rep. / Live cell immunogold labelling of RNA polymerase II by Orlov (2015)
10.5201/ipol.2017.203 / Image Process Lin / Data adaptive dual domain denoising: a method to boost state of the art denoising algorithms by Pierazzo (2017)
10.1016/j.abb.2015.02.009 / Arch. Biochem. Biophys. / Cryo-focused-ion-beam applications in structural biology by Rigort (2015)
10.1016/j.patrec.2004.07.002 / Pattern Recogn. Lett. / Efficient morphological reconstruction: a downhill filter by Robinson (2004)
10.1016/j.jsb.2013.09.024 / J. Struct. Biol. / Cryo FIB-SEM: volume imaging of cellular ultrastructure in native frozen specimens by Schertel (2013)
10.1007/s00418-008-0500-1 / Histochem. Cell Biol. / Electron microscopy of high pressure frozen samples: bridging the gap between cellular ultrastructure and atomic resolution by Studer (2008)
10.1038/ncomms11228 / Nat. Commun. / A vacuole-like compartment concentrates a disordered calcium phase in a key coccolithophorid alga by Sviben (2016)
van der Walt, S., Schonberger, J.L., Nunez-Iglesias, J., Boulogne, F., Warner, J.D., Yager, N., Gouillart, E., Yu, T., Contributors, S.I., 2014. scikit-image: image processing in Python. Peerj 2. (10.7717/peerj.453)
10.1016/j.jsb.2015.09.017 / J. Struct. Biol. / Mineral-bearing vesicle transport in sea urchin embryos by Vidavsky (2015)
10.1073/pnas.1612017113 / Proc. Natl. Acad. Sci. U.S.A. / Calcium transport into the cells of the sea urchin larva in relation to spicule formation by Vidavsky (2016)
10.1016/j.jsb.2016.09.016 / J. Struct. Biol. / Cryo-FIB-SEM serial milling and block face imaging: Large volume structural analysis of biological tissues preserved close to their native state by Vidavsky (2016)
10.1109/83.217222 / IEEE Trans. Image Process. / Morphological greyscale reconstruction in image analysis: applications and efficient algorithms by Vincent (1993)

Dates

Type	When
Created	5 years, 3 months ago (May 5, 2020, 11:12 p.m.)
Deposited	4 years, 4 months ago (April 20, 2021, 10:29 a.m.)
Indexed	1 hour, 12 minutes ago (Aug. 21, 2025, 8:11 a.m.)
Issued	5 years, 1 month ago (July 1, 2020)
Published	5 years, 1 month ago (July 1, 2020)
Published Print	5 years, 1 month ago (July 1, 2020)

Funders 2

Agence Nationale de la Recherche 10.13039/501100001665
Region: Europe
gov (National government)
Labels3
1. French National Research Agency
2. French National Agency for Research
3. ANR
French Infrastructure for Integrated Structural Biology 10.13039/501100011658
Region: Europe
pri (International organizations)
Labels1
1. FRISBI

BibTeX

@article{Spehner_2020, title={Cryo-FIB-SEM as a promising tool for localizing proteins in 3D}, volume={211}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2020.107528}, DOI={10.1016/j.jsb.2020.107528}, number={1}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Spehner, Daniele and Steyer, Anna M. and Bertinetti, Luca and Orlov, Igor and Benoit, Lucas and Pernet-Gallay, Karin and Schertel, Andreas and Schultz, Patrick}, year={2020}, month=jul, pages={107528} }

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