Crossref
journal-article
Elsevier BV
Journal of Structural Biology (78)
References
48
Referenced
22
10.1016/j.jsb.2015.02.001
/ J. Struct. Biol. / Alignment of direct detection device micrographs using a robust optical flow approach by Abrishami (2015)10.1016/j.jsb.2013.05.004
/ J. Struct. Biol. / Fourier ring correlation as a resolution criterion for super-resolution microscopy by Banterle (2013)10.1073/pnas.1402809111
/ PNAS / Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy by Bartesaghi (2014)10.1016/j.ultramic.2012.05.004
/ Ultramicroscopy / Nanoparticle movement: plasmonic forces and physical constraints by Batson (2012)10.1016/j.jsb.2012.02.003
/ J. Struct. Biol. / Beam-induced motion of vitrified specimen on holey carbon film by Brilot (2012)10.1016/j.str.2012.08.026
/ Structure / Movies of ice-embedded particles enhance resolution in electron cryo-microscopy by Campbell (2012)10.1073/pnas.1508996112
/ PNAS / Viscosity of deeply supercooled water and its coupling to molecular diffusion by Dehaoui (2015)10.1017/S143192760404067X
/ Microsc. Microanal. / Experimental characterization and mitigation of specimen charging on thin films with one conducting layer by Downing (2004)10.1017/S0033583500004297
/ Q. Rev. Biophys. / Cryo-electron microscopy of vitrified specimens by Dubochet (1988){'key': '10.1016/j.jsb.2016.12.006_b0050', 'series-title': 'Presented at the Applications of Optical Instrumentation in Medicine XII', 'first-page': '377', 'article-title': 'Noise power spectrum, MTF, and DQE of photoelectric radiographic systems', 'author': 'Fu', 'year': '1984'}
/ Presented at the Applications of Optical Instrumentation in Medicine XII / Noise power spectrum, MTF, and DQE of photoelectric radiographic systems by Fu (1984)10.1017/S1431927604040668
/ Microsc. Microanal. / Specimen charging on thin films with one conducting layer: discussion of physical principles by Glaeser (2004)10.7554/eLife.06980
/ eLife Sci. / Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6 by Grant (2015)10.1107/S0907444900009549
/ Acta Crystallogr. D Biol. Crystallogr. / Resolution measurement in structures derived from single particles by Grigorieff (2000)10.1364/OL.33.000156
/ Opt. Lett. / Efficient subpixel image registration algorithms by Guizar-Sicairos (2008)10.1016/j.jsb.2004.01.012
/ J. Struct. Biol. / Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique by Gyobu (2004)10.1103/PhysRevB.77.104102
/ Phys. Rev. B / Mean free path of inelastic electron scattering in elemental solids and oxides using transmission electron microscopy: atomic number dependent oscillatory behavior by Iakoubovskii (2008){'key': '10.1016/j.jsb.2016.12.006_b0085', 'series-title': 'Brownian Motion and Stochastic Calculus', 'author': 'Karatzas', 'year': '1991'}
/ Brownian Motion and Stochastic Calculus by Karatzas (1991)- Kuglin, C.D., Hines, D.C., 1975. The phase correlation image alignment method. In: Proceedings, IEEE International Conference on Cybernetics and Society, pp. 163–165.
{'key': '10.1016/j.jsb.2016.12.006_b0095', 'first-page': '120', 'article-title': 'Fast normalized cross-correlation', 'volume': '10', 'author': 'Lewis', 'year': '1995', 'journal-title': 'Vision Interface'}
/ Vision Interface / Fast normalized cross-correlation by Lewis (1995)10.1038/nmeth.2472
/ Nat. Methods / Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM by Li (2013)10.1016/j.jsb.2013.08.005
/ J. Struct. Biol. / Influence of electron dose rate on electron counting images recorded with the K2 camera by Li (2013)10.1016/0304-3991(91)90105-F
/ Ultramicroscopy / Optimum focus for taking electron holograms by Lichte (1991)10.1006/jsbi.1999.4174
/ J. Struct. Biol. / EMAN: semiautomated software for high-resolution single-particle reconstructions by Ludtke (1999)10.1016/j.ultramic.2014.03.001
/ Ultramicroscopy / Phase measurement error in summation of electron holography series by McLeod (2014)10.1016/j.ultramic.2014.08.002
/ Ultramicroscopy / Comparison of optimal performance at 300keV of three direct electron detectors for use in low dose electron microscopy by McMullan (2014)10.1016/j.ultramic.2015.05.017
/ Ultramicroscopy / Thon rings from amorphous ice and implications of beam-induced Brownian motion in single particle electron cryo-microscopy by McMullan (2015)10.1126/science.aaa2433
/ Science / Nanoscale temperature mapping in operating microelectronic devices by Mecklenburg (2015){'key': '10.1016/j.jsb.2016.12.006_b0130', 'series-title': 'Machine Learning', 'author': 'Mitchell', 'year': '1997'}
/ Machine Learning by Mitchell (1997)10.1016/S1047-8477(03)00069-8
/ J. Struct. Biol. / Accurate determination of local defocus and specimen tilt in electron microscopy by Mindell (2003)10.1016/S0091-679X(06)79027-6
/ Methods Cell Biol / Optimization of image collection for cellular electron microscopy by Mooney (2007){'key': '10.1016/j.jsb.2016.12.006_b0145', 'series-title': 'Computer Vision Systems', 'first-page': '278', 'article-title': 'Performance evaluation metrics and statistics for positional tracker evaluation', 'author': 'Needham', 'year': '2003'}
/ Computer Vision Systems / Performance evaluation metrics and statistics for positional tracker evaluation by Needham (2003)10.1038/nmeth.2448
/ Nat. Methods / Measuring image resolution in optical nanoscopy by Nieuwenhuizen (2013)10.1109/TIP.2011.2181402
/ IEEE Trans. Image Process. / Masked object registration in the Fourier domain by Padfield (2012){'key': '10.1016/j.jsb.2016.12.006_b0165', 'first-page': '216', 'article-title': 'CTFFIND4: fast and accurate defocus estimation from electron micrographs', 'volume': '192', 'author': 'Rohou', 'year': '2015', 'journal-title': 'J. Struct. Biol. Recent Adv. Detector Technol. Appl. Mol. TEM'}
/ J. Struct. Biol. Recent Adv. Detector Technol. Appl. Mol. TEM / CTFFIND4: fast and accurate defocus estimation from electron micrographs by Rohou (2015)10.1016/S0304-3991(02)00333-9
/ Ultramicroscopy / Particle finding in electron micrographs using a fast local correlation algorithm by Roseman (2003)-
Rubinstein, J.L., Brubaker, M.A., 2014. Alignment of cryo-EM movies of individual particles by optimization of image translations. arXiv:1409.6789 [physics, q-bio].
(
10.1016/j.jsb.2015.08.007
) 10.1016/j.jsb.2013.10.016
/ J. Struct. Biol. / Quantitative characterization of electron detectors for transmission electron microscopy by Ruskin (2013)10.1111/j.1365-2818.1982.tb00405.x
/ J. Microsc. / The correlation averaging of a regularly arranged bacterial cell envelope protein by Saxton (1982)10.1038/nmeth.2115
/ Nat. Methods / Prevention of overfitting in cryo-EM structure determination by Scheres (2012)10.7554/eLife.03665
/ eLife / Beam-induced motion correction for sub-megadalton cryo-EM particles by Scheres (2014)10.1107/S0365110X60001266
/ Acta Crystallogr. A / A note on the heavy-atom method by Sim (1960)10.1016/j.abb.2015.06.006
/ Arch. Biochem. Biophys. Electron Microsc. Struct. Biol. / 3D reconstruction of two-dimensional crystals by Stahlberg (2015)10.1016/j.ultramic.2004.08.008
/ Ultramicroscopy / Noise bias in the refinement of structures derived from single particles by Stewart (2004)- van Heel, M., Keegstra, W., Schutter, W., van Bruggen, E.F.J., 1982. Anthropod hemocyanin structures studied by image analysis. In: The Structure and Function of Invertebrate Respiratory Proteins. Presented at the EMBO Workshop, Leeds.
10.1016/j.jsb.2005.05.009
/ J. Struct. Biol. / Fourier shell correlation threshold criteria by van Heel (2005)10.1021/jp970984n
/ J. Phys. Chem. A / Global optimization by basin-hopping and the lowest energy structures of Lennard-Jones clusters containing up to 110 atoms by Wales (1997)10.1016/j.jsb.2015.11.003
/ J. Struct. Biol. / Gctf: real-time CTF determination and correction by Zhang (2016)10.1145/279232.279236
/ ACM Trans. Math. Softw. / Algorithm 778: L-BFGS-B: Fortran subroutines for large-scale bound-constrained optimization by Zhu (1997)
Dates
Type | When |
---|---|
Created | 8 years, 7 months ago (Dec. 27, 2016, 3:48 p.m.) |
Deposited | 5 years, 11 months ago (Sept. 16, 2019, 4:50 p.m.) |
Indexed | 3 months, 1 week ago (May 13, 2025, 8:10 p.m.) |
Issued | 8 years, 5 months ago (March 1, 2017) |
Published | 8 years, 5 months ago (March 1, 2017) |
Published Print | 8 years, 5 months ago (March 1, 2017) |
@article{McLeod_2017, title={Robust image alignment for cryogenic transmission electron microscopy}, volume={197}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2016.12.006}, DOI={10.1016/j.jsb.2016.12.006}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={McLeod, Robert A. and Kowal, Julia and Ringler, Philippe and Stahlberg, Henning}, year={2017}, month=mar, pages={279–293} }