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Journal of Structural Biology (78)
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Deng, Y., Chen, Y., Zhang, Y., Wang, S., Zhang, F., & Sun, F. (2016). ICON: 3D reconstruction with ‘missing-information’ restoration in biological electron tomography. Journal of Structural Biology, 195(1), 100–112.

Authors 6
  1. Yuchen Deng (first)
  2. Yu Chen (additional)
  3. Yan Zhang (additional)
  4. Shengliu Wang (additional)
  5. Fa Zhang (additional)
  6. Fei Sun (additional)
References 43 Referenced 81
  1. {'year': '2013', 'series-title': 'Sparse imaging for fast electron microscopy', 'author': 'Anderson', 'key': '10.1016/j.jsb.2016.04.004_b0005'} / Sparse imaging for fast electron microscopy by Anderson (2013)
  2. 10.1016/j.str.2012.10.016 / Structure / Protein secondary structure determination by constrained single-particle cryo-electron tomography by Bartesaghi (2012)
  3. 10.1109/TIP.2011.2131661 / IEEE Trans. Image Process. / DART: a practical reconstruction algorithm for discrete tomography by Batenburg (2011)
  4. 10.1016/j.ultramic.2009.01.009 / Ultramicroscopy / 3D imaging of nanomaterials by discrete tomography by Batenburg (2009)
  5. 10.1016/j.str.2015.06.026 / Structure / Advances in single-particle electron cryomicroscopy structure determination applied to sub-tomogram averaging by Bharat (2015)
  6. 10.1109/TIT.2006.885507 / IEEE Trans. Inf. Theory / Near-optimal signal recovery from random projections: universal encoding strategies? by Candes (2006)
  7. 10.1002/cpa.20124 / Commun. Pure Appl. Math. / Stable signal recovery from incomplete and inaccurate measurements by Candes (2006)
  8. 10.1109/TIT.2005.862083 / IEEE Trans. Inf. Theory / Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency information by Candes (2006)
  9. {'key': '10.1016/j.jsb.2016.04.004_b0045', 'first-page': '159', 'article-title': 'Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections', 'volume': '145', 'author': 'Carazo', 'year': '1987', 'journal-title': 'J. Microsc.'} / J. Microsc. / Restoration of direct Fourier three-dimensional reconstructions of crystalline specimens by the method of convex projections by Carazo (1987)
  10. 10.1016/j.jsb.2005.04.006 / J. Struct. Biol. / A resolution criterion for electron tomography based on cross-validation by Cardone (2005)
  11. 10.1137/S003614450037906X / SIAM Rev. / Atomic decomposition by basis pursuit by Chen (2001)
  12. 10.1016/j.jsb.2013.12.001 / J. Struct. Biol. / Iterative reconstruction of cryo-electron tomograms using nonuniform fast Fourier transforms by Chen (2014)
  13. 10.1109/TIT.2006.871582 / IEEE Trans. Inf. Theory / Compressed sensing by Donoho (2006)
  14. 10.1002/cpa.20132 / Commun. Pure Appl. Math. / For most large underdetermined systems of linear equations the minimal ·1-norm solution is also the sparsest solution by Donoho (2006)
  15. 10.1109/TIT.2011.2173241 / IEEE Trans. Inf. Theory / Sparse solution of underdetermined systems of linear equations by stagewise orthogonal matching pursuit by Donoho (2012)
  16. {'key': '10.1016/j.jsb.2016.04.004_b0080', 'first-page': '371', 'article-title': 'The radon transform', 'author': 'Easton', 'year': '2010'} / The radon transform by Easton (2010)
  17. 10.1016/0022-5193(72)90180-4 / J. Theor. Biol. / Iterative methods for the three-dimensional reconstruction of an object from projections by Gilbert (1972)
  18. 10.1137/0303013 / J. Soc. Ind. Appl. Math. Ser. A Control / On steepest descent by Goldstein (1965)
  19. 10.1016/j.ultramic.2011.11.004 / Ultramicroscopy / Electron tomography based on a total variation minimization reconstruction technique by Goris (2012)
  20. 10.1016/j.jsb.2015.09.022 / J. Struct. Biol. / A novel fully automatic scheme for fiducial marker-based alignment in electron tomography by Han (2015)
  21. Hestenes, M.R., Stiefel, E., 1952. Methods of Conjugate Gradient for solving linear systems. (10.6028/jres.049.044)
  22. 10.1016/j.jsb.2006.07.003 / J. Struct. Biol. / SPARX, a new environment for Cryo-EM image processing by Hohn (2007)
  23. 10.1016/j.jsb.2011.12.003 / J. Struct. Biol. / PyTom: a python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis by Hrabe (2012)
  24. 10.1145/1555386.1555388 / ACM Trans. Math. Softw. / Using NFFT 3—a software library for various nonequispaced fast Fourier transforms by Keiner (2009)
  25. 10.1006/jsbi.1996.0013 / J. Struct. Biol. / Computer visualization of three-dimensional image data using IMOD by Kremer (1996)
  26. 10.1038/nmeth.2727 / Nat. Methods / Quantifying the local resolution of cryo-EM density maps by Kucukelbir (2014)
  27. 10.1016/j.jsb.2014.09.010 / J. Struct. Biol. / Super-sampling SART with ordered subsets by Kunz (2014)
  28. 10.1016/j.ultramic.2013.03.019 / Ultramicroscopy / Compressed sensing electron tomography by Leary (2013)
  29. 10.1146/annurev.biochem.73.011303.074112 / Annu. Rev. Biochem. / Structural studies by electron tomography: from cells to molecules by Lučić (2005)
  30. 10.1002/mrm.21391 / Magn. Reson. Med. / Sparse MRI: the application of compressed sensing for rapid MR imaging by Lustig (2007)
  31. 10.1016/0010-4825(76)90064-0 / Comput. Biol. Med. / Direct Fourier transform techniques in 3-D image reconstruction by Mersereau (1976)
  32. 10.1126/science.1128618 / Science / The molecular architecture of axonemes revealed by cryoelectron tomography by Nicastro (2006)
  33. 10.1109/5.989875 / Proc. IEEE / Certain topics in telegraph transmission theory by Nyquist (1928)
  34. 10.1016/0304-3991(95)00078-X / Ultramicroscopy / Double-tilt electron tomography by Penczek (1995)
  35. {'key': '10.1016/j.jsb.2016.04.004_b0175', 'series-title': 'Electron Tomography', 'first-page': '91', 'article-title': 'Weighted back-projection methods', 'author': 'Radermacher', 'year': '1992'} / Electron Tomography / Weighted back-projection methods by Radermacher (1992)
  36. 10.1016/j.ultramic.2015.10.021 / Ultramicroscopy / Compressed sensing electron tomography of needle-shaped biological specimens – potential for improved reconstruction fidelity with reduced dose by Saghi (2016)
  37. 10.1021/nl202253a / Nano Lett. / Three-dimensional morphology of iron oxide nanoparticles with reactive concave surfaces. A compressed sensing-electron tomography (CS-ET) approach by Saghi (2011)
  38. 10.1016/j.jsb.2012.09.006 / J. Struct. Biol. / RELION: implementation of a Bayesian approach to cryo-EM structure determination by Scheres (2012)
  39. 10.1364/AO.22.002781 / Appl. Opt. / Image restoration by convex projections in the presence of noise by Sezan (1983)
  40. 10.1016/j.jsb.2006.05.009 / J. Struct. Biol. / EMAN2: an extensible image processing suite for electron microscopy by Tang (2007)
  41. 10.1109/TIT.2004.834793 / IEEE Trans. Inf. Theory / Greed is good: algorithmic results for sparse approximation by Tropp (2004)
  42. 10.1016/j.camwa.2004.10.034 / Comput. Math. Appl. / An intuitive discussion on the ideal ramp filter in computed tomography (I) by Wei (2005)
  43. 10.1016/j.jsb.2009.08.002 / J. Struct. Biol. / Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging by Zanetti (2009)
Dates
Type When
Created 9 years, 4 months ago (April 11, 2016, 10:29 a.m.)
Deposited 5 years, 9 months ago (Nov. 5, 2019, 12:07 p.m.)
Indexed 4 weeks ago (July 24, 2025, 7:36 a.m.)
Issued 9 years, 1 month ago (July 1, 2016)
Published 9 years, 1 month ago (July 1, 2016)
Published Print 9 years, 1 month ago (July 1, 2016)
Funders 3
  1. Strategic Priority Research Program of Chinese Academy of Sciences
    Awards1
    1. XDB08030202
  2. Ministry of Science and Technology of China
    Awards1
    1. 2014CB910700
  3. National Natural Science Foundation of China 10.13039/501100001809

    Region: Asia

    gov (National government)

    Labels11
    1. Chinese National Science Foundation
    2. Natural Science Foundation of China
    3. National Science Foundation of China
    4. NNSF of China
    5. NSF of China
    6. 国家自然科学基金委员会
    7. National Nature Science Foundation of China
    8. Guójiā Zìrán Kēxué Jījīn Wěiyuánhuì
    9. NSFC
    10. NNSF
    11. NNSFC
    Awards5
    1. 61232001
    2. 61472397
    3. 61502455
    4. 31100617
    5. 31470037

@article{Deng_2016, title={ICON: 3D reconstruction with ‘missing-information’ restoration in biological electron tomography}, volume={195}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2016.04.004}, DOI={10.1016/j.jsb.2016.04.004}, number={1}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Deng, Yuchen and Chen, Yu and Zhang, Yan and Wang, Shengliu and Zhang, Fa and Sun, Fei}, year={2016}, month=jul, pages={100–112} }