DOI: 10.1016/j.jsb.2013.12.010. ResLog plots as an empirical metric of the quality of cryo-EM reconstructions

ResLog plots as an empirical metric of the quality of cryo-EM reconstructions

10.1016/j.jsb.2013.12.010

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Stagg, S. M., Noble, A. J., Spilman, M., & Chapman, M. S. (2014). ResLog plots as an empirical metric of the quality of cryo-EM reconstructions. Journal of Structural Biology, 185(3), 418â426.

Authors 4

Scott M. Stagg (first)
Alex J. Noble (additional)
Michael Spilman (additional)
Michael S. Chapman (additional)

References 34 Referenced 79

10.1016/j.jsb.2006.08.019 / J. Struct. Biol. / Assessing the capabilities of a 4k×4k CCD camera for electron cryo-microscopy at 300kV by Booth (2006)
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10.1016/j.jsb.2013.01.003 / J. Struct. Biol. / Atomic modeling of cryo-electron microscopy reconstructions–joint refinement of model and imaging parameters by Chapman (2013)
10.1016/j.jsb.2006.03.005 / J. Struct. Biol. / Does contamination buildup limit throughput for automated cryoEM? by Cheng (2006)
10.1128/JVI.07232-11 / J. Virol. / Structural insight into the unique properties of adeno-associated virus serotype 9 by DiMattia (2012)
10.1016/j.jsb.2008.05.010 / J. Struct. Biol. / Sharpening high resolution information in single particle electron cryomicroscopy by Fernández (2008)
10.1016/j.ultramic.2010.10.010 / Ultramicroscopy / Images of paraffin monolayer crystals with perfect contrast: minimization of beam-induced specimen motion by Glaeser (2011)
10.1111/j.1365-2818.1978.tb01160.x / J. Microsc. / Radiation damage relative to transmission electron microscopy of biological specimens at low temperature: a review by Glaeser (1978)
10.1016/j.jsb.2010.12.005 / J. Struct. Biol. / Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM by Glaeser (2011)
10.1016/j.jsb.2006.05.004 / J. Struct. Biol. / FREALIGN: high-resolution refinement of single particle structures by Grigorieff (2007)
10.1128/JVI.00254-08 / J Virol / In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses by Grimm (2008)
{'key': '10.1016/j.jsb.2013.12.010_b0055', 'first-page': '146', 'article-title': 'Exact filters for general geometry three dimensional reconstruction', 'volume': '73', 'author': 'Harauz', 'year': '1986', 'journal-title': 'OPTIK'} / OPTIK / Exact filters for general geometry three dimensional reconstruction by Harauz (1986)
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10.1093/emboj/cdf380 / EMBO J. / Three-dimensional structure of the type 1 inositol 1,4,5-trisphosphate receptor at 24Å resolution by Jiang (2002)
10.1016/j.jsb.2009.01.002 / J. Struct. Biol. / Appion: an integrated, database-driven pipeline to facilitate EM image processing by Lander (2009)
10.1016/j.jsb.2008.05.007 / J. Struct. Biol. / Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome by LeBarron (2008)
10.1016/j.str.2012.05.004 / Structure / Structure of AAV-DJ, a retargeted gene therapy vector: cryo-electron microscopy at 4.5Å resolution by Lerch (2012)
10.1016/j.str.2010.05.008 / Structure / Definition and estimation of resolution in single-particle reconstructions by Liao (2010)
10.1006/jsbi.1999.4174 / J. Struct. Biol. / EMAN: semiautomated software for high-resolution single-particle reconstructions by Ludtke (1999)
10.1016/j.ultramic.2005.02.004 / Ultramicroscopy / ACE: automated CTF estimation by Mallick (2005)
10.1128/JVI.01304-07 / J. Virol. / Structure of adeno-associated virus serotype 8, a gene therapy vector by Nam (2007)
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10.1006/jsbi.2001.4330 / J. Struct. Biol. / Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination by Saad (2001)
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10.1016/j.jsb.2008.04.005 / J. Struct. Biol. / A test-bed for optimizing high-resolution single particle reconstructions by Stagg (2008)
10.1016/j.ultramic.2004.08.008 / Ultramicroscopy / Noise bias in the refinement of structures derived from single particles by Stewart (2004)
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10.1073/pnas.162250899 / Proc. Natl. Acad. Sci. USA / The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy by Xie (2002)
10.1016/j.jsb.2013.09.004 / J. Struct. Biol. / Electron microscopy analysis of a disaccharide analog complex reveals receptor interactions of adeno-associated virus by Xie (2013)

Dates

Type	When
Created	11 years, 7 months ago (Jan. 3, 2014, 2:32 a.m.)
Deposited	6 years, 10 months ago (Oct. 7, 2018, 3:51 p.m.)
Indexed	3 weeks ago (Aug. 6, 2025, 8:02 a.m.)
Issued	11 years, 5 months ago (March 1, 2014)
Published	11 years, 5 months ago (March 1, 2014)
Published Print	11 years, 5 months ago (March 1, 2014)

Funders 1

BibTeX

@article{Stagg_2014, title={ResLog plots as an empirical metric of the quality of cryo-EM reconstructions}, volume={185}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2013.12.010}, DOI={10.1016/j.jsb.2013.12.010}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Stagg, Scott M. and Noble, Alex J. and Spilman, Michael and Chapman, Michael S.}, year={2014}, month=mar, pages={418–426} }

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