DOI: 10.1016/j.jsb.2012.05.005. Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter

Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter

10.1016/j.jsb.2012.05.005

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Sindelar, C. V., & Grigorieff, N. (2012). Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter. Journal of Structural Biology, 180(1), 26â38.

Authors 2

Charles V. Sindelar (first)
Nikolaus Grigorieff (additional)

References 20 Referenced 35

10.1126/science.6879170 / Science / Solvent-accessible surfaces of proteins and nucleic acids by Connolly (1983)
10.1006/jsbi.1996.0030 / J. Struct. Biol. / SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields by Frank (1996)
{'key': '10.1016/j.jsb.2012.05.005_b0015', 'series-title': 'Electron Crystallography of Biological Macromolecules', 'author': 'Glaeser', 'year': '2007'} / Electron Crystallography of Biological Macromolecules by Glaeser (2007)
10.1016/j.jsb.2006.05.004 / J. Struct. Biol. / FREALIGN: high-resolution refinement of single particle structures by Grigorieff (2007)
10.1016/j.sbi.2011.01.008 / Curr. Opin. Struct. Biol. / Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy by Grigorieff (2011)
{'key': '10.1016/j.jsb.2012.05.005_b0030', 'first-page': '146', 'article-title': 'Exact filters for general geometry three dimensional reconstruction', 'volume': '73', 'author': 'Harauz', 'year': '1986', 'journal-title': 'Optik'} / Optik / Exact filters for general geometry three dimensional reconstruction by Harauz (1986)
10.1006/jmbi.2001.5133 / J. Mol. Biol. / A 11.5 A single particle reconstruction of GroEL using EMAN by Ludtke (2001)
10.1016/S0076-6879(10)82001-4 / Methods Enzymol. / Fundamentals of three-dimensional reconstruction from projections by Penczek (2010)
10.1002/jcc.20084 / J. Comput. Chem. / UCSF Chimera–a visualization system for exploratory research and analysis by Pettersen (2004)
10.1016/j.jmb.2003.07.013 / J. Mol. Biol. / Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy by Rosenthal (2003)
{'key': '10.1016/j.jsb.2012.05.005_b0055', 'series-title': 'Computer techniques for image processing in electron microscopy', 'author': 'Saxton', 'year': '1978'} / Computer techniques for image processing in electron microscopy by Saxton (1978)
10.1016/j.jmb.2011.11.010 / J. Mol. Biol. / A Bayesian view on cryo-EM structure determination by Scheres (2012)
10.1016/j.jsb.2011.06.010 / J. Struct. Biol. / An adaptation of the Wiener filter suitable for analyzing images of isolated single particles by Sindelar (2011)
10.1016/j.jsb.2004.06.006 / J. Struct. Biol. / XMIPP: a new generation of an open-source image processing package for electron microscopy by Sorzano (2004)
10.1016/j.ultramic.2004.08.008 / Ultramicroscopy / Noise bias in the refinement of structures derived from single particles by Stewart (2004)
{'key': '10.1016/j.jsb.2012.05.005_b0080', 'series-title': 'Detection, estimation, and modulation theory', 'author': 'Van Trees', 'year': '2001'} / Detection, estimation, and modulation theory by Van Trees (2001)
{'key': '10.1016/j.jsb.2012.05.005_b0085', 'series-title': 'Resolution of Phase Ambiguity in Macromolecular Crystallography. In Methods in Enzymology', 'author': 'Wang', 'year': '1985'} / Resolution of Phase Ambiguity in Macromolecular Crystallography. In Methods in Enzymology by Wang (1985)
{'key': '10.1016/j.jsb.2012.05.005_b0090', 'series-title': 'Extrapolation, Interpolation, and Smoothing of Stationary Time Series', 'author': 'Wiener', 'year': '1949'} / Extrapolation, Interpolation, and Smoothing of Stationary Time Series by Wiener (1949)
10.1073/pnas.0914604107 / Proc. Natl. Acad. Sci. USA / Subunit interactions in bovine papillomavirus by Wolf (2010)
10.1016/j.str.2008.10.011 / Structure / Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis by Zhang (2008)

Dates

Type	When
Created	13 years, 3 months ago (May 21, 2012, 10:48 p.m.)
Deposited	6 years, 8 months ago (Nov. 23, 2018, 4:55 a.m.)
Indexed	2 months, 2 weeks ago (June 8, 2025, 1:20 a.m.)
Issued	12 years, 10 months ago (Oct. 1, 2012)
Published	12 years, 10 months ago (Oct. 1, 2012)
Published Print	12 years, 10 months ago (Oct. 1, 2012)

Funders 1

NIH
Awards1
1. P01 GM- 623580

BibTeX

@article{Sindelar_2012, title={Optimal noise reduction in 3D reconstructions of single particles using a volume-normalized filter}, volume={180}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2012.05.005}, DOI={10.1016/j.jsb.2012.05.005}, number={1}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Sindelar, Charles V. and Grigorieff, Nikolaus}, year={2012}, month=oct, pages={26–38} }

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