DOI: 10.1016/j.jsb.2010.09.023. Macromolecular docking restrained by a small angle X-ray scattering profile

Macromolecular docking restrained by a small angle X-ray scattering profile

10.1016/j.jsb.2010.09.023

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Schneidman-Duhovny, D., Hammel, M., & Sali, A. (2011). Macromolecular docking restrained by a small angle X-ray scattering profile. Journal of Structural Biology, 173(3), 461â471.

Authors 3

Dina Schneidman-Duhovny (first)
Michal Hammel (additional)
Andrej Sali (additional)

References 53 Referenced 93

10.1146/annurev.biochem.77.060407.135530 / Annu. Rev. Biochem. / Integrating diverse data for structure determination of macromolecular assemblies by Alber (2008)
10.1038/nature06404 / Nature / Determining the architectures of macromolecular assemblies by Alber (2007)
10.1073/pnas.0702626104 / Proc. Natl Acad. Sci. USA / Prediction of the structure of symmetrical protein assemblies by Andre (2007)
10.1002/prot.21495 / Proteins / FireDock: fast interaction refinement in molecular docking by Andrusier (2007)
10.1016/S0006-3495(98)77984-6 / Biophys. J. / Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm by Chacon (1998)
10.1126/science.6879170 / Science / Solvent-accessible surfaces of proteins and nucleic acids by Connolly (1983)
10.1016/j.jmb.2008.06.008 / J. Mol. Biol. / Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody by Covaceuszach (2008)
10.1002/andp.19153510606 / Ann. Phys. / Zerstreuung von Röntgenstrahlen by Debye (1915)
Duhovny, D., Nussinov, R., Wolfson, H.J., 2002. Efficient unbound docking of rigid molecules, p. 185–200, in: Guigó, R, Gusfield, D., Eds.), Second International Workshop, WABI 2002, Springer Berlin/Heidelberg, Rome, Italy, vol. 2452/2002, pp. 185–200.
10.1016/j.str.2005.01.008 / Structure / Large macromolecular complexes in the Protein Data Bank: a status report by Dutta (2005)
10.1016/j.crvi.2004.03.006 / C. R. Biol. / On proteins, grids, correlations, and docking by Eisenstein (2004)
10.1002/prot.10383 / Proteins / ICM-DISCO docking by global energy optimization with fully flexible side-chains by Fernandez-Recio (2003)
10.1016/j.bbrc.2003.08.093 / Biochem. Biophys. Res. Commun. / Docking and small angle X-ray scattering studies of purine nucleoside phosphorylase by Filgueira de Azevedo (2003)
10.1016/j.jmb.2008.07.074 / J. Mol. Biol. / Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies by Förster (2008)
10.1107/S0021889878014296 / J. Appl. Crystallogr. / An improved method for calculating the contribution of solvent to the X-ray diffraction pattern of biological molecules by Fraser (1978)
10.1016/S0022-2836(03)00670-3 / J. Mol. Biol. / Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations by Gray (2003)
{'key': '10.1016/j.jsb.2010.09.023_b0085', 'series-title': 'Small-angle scattering of X-rays', 'author': 'Guinier', 'year': '1955'} / Small-angle scattering of X-rays by Guinier (1955)
10.1038/nmeth.1353 / Nat. Methods / Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS) by Hura (2009)
10.1002/prot.22106 / Proteins / Protein-protein docking benchmark version 3.0 by Hwang (2008)
10.1016/j.jmb.2005.03.039 / J. Mol. Biol. / Prediction of multimolecular assemblies by multiple docking by Inbar (2005)
10.1110/ps.041081905 / Protein Sci. / Assessing predictions of protein-protein interaction: the CAPRI experiment by Janin (2005)
10.1002/prot.21689 / Proteins / The targets of CAPRI rounds 6–12 by Janin (2007)
10.1074/mcp.M000051-MCP201 / Mol. Cell Proteomics / Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multi-body docking server by Karaca (2010)
10.1073/pnas.89.6.2195 / Proc. Natl. Acad. Sci. USA / Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques by Katchalski-Katzir (1992)
10.1107/S0021889803012779 / J. Appl. Crystallogr. / PRIMUS: a Windows PC-based system for small-angle scattering data analysis by Konarev (2003)
10.1038/nature04670 / Nature / Global landscape of protein complexes in the yeast Saccharomyces cerevisiae by Krogan (2006)
Lamdan, Y., Wolfson, H.J., 1988. Geometric hashing: a general and efficient model-based recognition scheme. In: Second International Conference on Computer Vision. pp. 238–249. (10.1109/CCV.1988.589995)
10.1016/j.jmb.2009.02.031 / J. Mol. Biol. / Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly by Lasker (2009)
10.1002/prot.21804 / Proteins / Docking and scoring protein complexes: CAPRI, third ed. by Lensink (2007)
10.1093/nar/gkn186 / Nucleic Acids Res. / FireDock: a web server for fast interaction refinement in molecular docking by Mashiach (2008)
10.1002/prot.10393 / Proteins / Assessment of blind predictions of protein-protein interactions: current status of docking methods by Mendez (2003)
10.1002/prot.20551 / Proteins / Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures by Mendez (2005)
10.4149/gpb_2009_02_174 / Gen. Physiol. Biophys. / Structure and flexibility within proteins as identified through small angle X-ray scattering by Pelikan (2009)
10.1529/biophysj.105.064154 / Biophys. J. / Global rigid body modeling of macromolecular complexes against small-angle scattering data by Petoukhov (2005)
10.1016/j.sbi.2007.06.009 / Curr. Opin. Struct. Biol. / Analysis of X-ray and neutron scattering from biomacromolecular solutions by Petoukhov (2007)
10.1017/S0033583507004635 / Q. Rev. Biophys. / X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution by Putnam (2007)
10.2174/138920308783565741 / Curr. Protein Pept. Sci. / Recent progress and future directions in protein-protein docking by Ritchie (2008)
10.1038/nature06523 / Nature / The molecular sociology of the cell by Robinson (2007)
10.1002/prot.21759 / Proteins / Automatic prediction of protein interactions with large scale motion by Schneidman-Duhovny (2007)
10.1093/nar/gkq461 / Nucleic Acids Res. / FoXS: a web server for rapid computation and fitting of SAXS Profiles by Schneidman-Duhovny (2010)
10.1002/prot.20562 / Proteins / Geometry-based flexible and symmetric protein docking by Schneidman-Duhovny (2005)
10.1093/nar/gki481 / Nucleic Acids Res. / PatchDock and SymmDock: servers for rigid and symmetric docking by Schneidman-Duhovny (2005)
10.1002/prot.10397 / Proteins / Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking by Schneidman-Duhovny (2003)
10.1073/pnas.0508315102 / Proc. Natl. Acad. Sci. USA / Computational docking and solution x-ray scattering predict a membrane-interacting role for the histone domain of the Ras activator son of sevenless by Sondermann (2005)
10.1016/j.jsb.2008.06.002 / J. Struct. Biol. / The future is hybrid by Steven (2008)
10.1107/S0021889895007047 / J. Appl. Crystallogr. / CRYSOL - a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates by Svergun (1995)
10.1016/S0006-3495(99)77443-6 / Biophys. J. / Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing by Svergun (1999)
10.1016/S0006-3495(01)76260-1 / Biophys. J. / Determination of domain structure of proteins from X-ray solution scattering by Svergun (2001)
10.1016/j.sbi.2008.08.002 / Curr. Opin. Struct. Biol. / Experimental approaches for solution X-ray scattering and fiber diffraction by Tsuruta (2008)
10.1002/prot.20554 / Proteins / Classification of protein complexes based on docking difficulty by Vajda (2005)
10.1016/j.sbi.2009.02.008 / Curr. Opin. Struct. Biol. / Convergence and combination of methods in protein-protein docking by Vajda (2009)
10.1002/prot.20563 / Proteins / Data-driven docking: HADDOCK’s adventures in CAPRI by van Dijk (2005)
10.1016/0022-2836(78)90302-9 / J. Mol. Biol. / Computer analysis of protein-protein interaction by Wodak (1978)

Dates

Type	When
Created	14 years, 10 months ago (Oct. 4, 2010, 5:46 a.m.)
Deposited	6 years, 8 months ago (Dec. 7, 2018, 11:26 a.m.)
Indexed	34 minutes ago (Aug. 30, 2025, 2:13 a.m.)
Issued	14 years, 5 months ago (March 1, 2011)
Published	14 years, 5 months ago (March 1, 2011)
Published Print	14 years, 5 months ago (March 1, 2011)

Funders 0

None

BibTeX

@article{Schneidman_Duhovny_2011, title={Macromolecular docking restrained by a small angle X-ray scattering profile}, volume={173}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2010.09.023}, DOI={10.1016/j.jsb.2010.09.023}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Schneidman-Duhovny, Dina and Hammel, Michal and Sali, Andrej}, year={2011}, month=mar, pages={461–471} }

JSON

{
  "indexed": {
    "date-parts": [
      [
        2025,
        8,
        30
      ]
    ],
    "date-time": "2025-08-30T06:13:06Z",
    "timestamp": 1756534386823
  },
  "reference-count": 53,
  "publisher": "Elsevier BV",
  "issue": "3",
  "license": [
    {
      "start": {
        "date-parts": [
          [
            2011,
            3,
            1
          ]
        ],
        "date-time": "2011-03-01T00:00:00Z",
        "timestamp": 1298937600000
      },
      "content-version": "tdm",
      "delay-in-days": 0,
      "URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
    }
  ],
  "content-domain": {
    "domain": [],
    "crossmark-restriction": false
  },
  "published-print": {
    "date-parts": [
      [
        2011,
        3
      ]
    ]
  },
  "DOI": "10.1016/j.jsb.2010.09.023",
  "type": "journal-article",
  "created": {
    "date-parts": [
      [
        2010,
        10,
        4
      ]
    ],
    "date-time": "2010-10-04T09:46:57Z",
    "timestamp": 1286185617000
  },
  "page": "461-471",
  "source": "Crossref",
  "is-referenced-by-count": 93,
  "title": "Macromolecular docking restrained by a small angle X-ray scattering profile",
  "prefix": "10.1016",
  "volume": "173",
  "author": [
    {
      "given": "Dina",
      "family": "Schneidman-Duhovny",
      "sequence": "first",
      "affiliation": []
    },
    {
      "given": "Michal",
      "family": "Hammel",
      "sequence": "additional",
      "affiliation": []
    },
    {
      "given": "Andrej",
      "family": "Sali",
      "sequence": "additional",
      "affiliation": []
    }
  ],
  "member": "78",
  "reference": [
    {
      "key": "10.1016/j.jsb.2010.09.023_b0005",
      "doi-asserted-by": "crossref",
      "first-page": "443",
      "DOI": "10.1146/annurev.biochem.77.060407.135530",
      "article-title": "Integrating diverse data for structure determination of macromolecular assemblies",
      "volume": "77",
      "author": "Alber",
      "year": "2008",
      "journal-title": "Annu. Rev. Biochem."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0010",
      "doi-asserted-by": "crossref",
      "first-page": "683",
      "DOI": "10.1038/nature06404",
      "article-title": "Determining the architectures of macromolecular assemblies",
      "volume": "450",
      "author": "Alber",
      "year": "2007",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0015",
      "doi-asserted-by": "crossref",
      "first-page": "17656",
      "DOI": "10.1073/pnas.0702626104",
      "article-title": "Prediction of the structure of symmetrical protein assemblies",
      "volume": "104",
      "author": "Andre",
      "year": "2007",
      "journal-title": "Proc. Natl Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0020",
      "doi-asserted-by": "crossref",
      "first-page": "139",
      "DOI": "10.1002/prot.21495",
      "article-title": "FireDock: fast interaction refinement in molecular docking",
      "volume": "69",
      "author": "Andrusier",
      "year": "2007",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0025",
      "doi-asserted-by": "crossref",
      "first-page": "2760",
      "DOI": "10.1016/S0006-3495(98)77984-6",
      "article-title": "Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm",
      "volume": "74",
      "author": "Chacon",
      "year": "1998",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0030",
      "doi-asserted-by": "crossref",
      "first-page": "709",
      "DOI": "10.1126/science.6879170",
      "article-title": "Solvent-accessible surfaces of proteins and nucleic acids",
      "volume": "221",
      "author": "Connolly",
      "year": "1983",
      "journal-title": "Science"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0035",
      "doi-asserted-by": "crossref",
      "first-page": "881",
      "DOI": "10.1016/j.jmb.2008.06.008",
      "article-title": "Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody",
      "volume": "381",
      "author": "Covaceuszach",
      "year": "2008",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0040",
      "doi-asserted-by": "crossref",
      "first-page": "809",
      "DOI": "10.1002/andp.19153510606",
      "article-title": "Zerstreuung von R\u00f6ntgenstrahlen",
      "volume": "351",
      "author": "Debye",
      "year": "1915",
      "journal-title": "Ann. Phys."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0045",
      "unstructured": "Duhovny, D., Nussinov, R., Wolfson, H.J., 2002. Efficient unbound docking of rigid molecules, p. 185\u2013200, in: Guig\u00f3, R, Gusfield, D., Eds.), Second International Workshop, WABI 2002, Springer Berlin/Heidelberg, Rome, Italy, vol. 2452/2002, pp. 185\u2013200."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0050",
      "doi-asserted-by": "crossref",
      "first-page": "381",
      "DOI": "10.1016/j.str.2005.01.008",
      "article-title": "Large macromolecular complexes in the Protein Data Bank: a status report",
      "volume": "13",
      "author": "Dutta",
      "year": "2005",
      "journal-title": "Structure"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0055",
      "doi-asserted-by": "crossref",
      "first-page": "409",
      "DOI": "10.1016/j.crvi.2004.03.006",
      "article-title": "On proteins, grids, correlations, and docking",
      "volume": "327",
      "author": "Eisenstein",
      "year": "2004",
      "journal-title": "C. R. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0060",
      "doi-asserted-by": "crossref",
      "first-page": "113",
      "DOI": "10.1002/prot.10383",
      "article-title": "ICM-DISCO docking by global energy optimization with fully flexible side-chains",
      "volume": "52",
      "author": "Fernandez-Recio",
      "year": "2003",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0065",
      "doi-asserted-by": "crossref",
      "first-page": "923",
      "DOI": "10.1016/j.bbrc.2003.08.093",
      "article-title": "Docking and small angle X-ray scattering studies of purine nucleoside phosphorylase",
      "volume": "309",
      "author": "Filgueira de Azevedo",
      "year": "2003",
      "journal-title": "Biochem. Biophys. Res. Commun."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0070",
      "doi-asserted-by": "crossref",
      "first-page": "1089",
      "DOI": "10.1016/j.jmb.2008.07.074",
      "article-title": "Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies",
      "volume": "382",
      "author": "F\u00f6rster",
      "year": "2008",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0075",
      "doi-asserted-by": "crossref",
      "first-page": "693",
      "DOI": "10.1107/S0021889878014296",
      "article-title": "An improved method for calculating the contribution of solvent to the X-ray diffraction pattern of biological molecules",
      "volume": "11",
      "author": "Fraser",
      "year": "1978",
      "journal-title": "J. Appl. Crystallogr."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0080",
      "doi-asserted-by": "crossref",
      "first-page": "281",
      "DOI": "10.1016/S0022-2836(03)00670-3",
      "article-title": "Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations",
      "volume": "331",
      "author": "Gray",
      "year": "2003",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0085",
      "series-title": "Small-angle scattering of X-rays",
      "author": "Guinier",
      "year": "1955"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0090",
      "doi-asserted-by": "crossref",
      "first-page": "606",
      "DOI": "10.1038/nmeth.1353",
      "article-title": "Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)",
      "volume": "6",
      "author": "Hura",
      "year": "2009",
      "journal-title": "Nat. Methods"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0095",
      "doi-asserted-by": "crossref",
      "first-page": "705",
      "DOI": "10.1002/prot.22106",
      "article-title": "Protein-protein docking benchmark version 3.0",
      "volume": "73",
      "author": "Hwang",
      "year": "2008",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0100",
      "doi-asserted-by": "crossref",
      "first-page": "435",
      "DOI": "10.1016/j.jmb.2005.03.039",
      "article-title": "Prediction of multimolecular assemblies by multiple docking",
      "volume": "349",
      "author": "Inbar",
      "year": "2005",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0105",
      "doi-asserted-by": "crossref",
      "first-page": "278",
      "DOI": "10.1110/ps.041081905",
      "article-title": "Assessing predictions of protein-protein interaction: the CAPRI experiment",
      "volume": "14",
      "author": "Janin",
      "year": "2005",
      "journal-title": "Protein Sci."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0110",
      "doi-asserted-by": "crossref",
      "first-page": "699",
      "DOI": "10.1002/prot.21689",
      "article-title": "The targets of CAPRI rounds 6\u201312",
      "volume": "69",
      "author": "Janin",
      "year": "2007",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0115",
      "doi-asserted-by": "crossref",
      "first-page": "1784",
      "DOI": "10.1074/mcp.M000051-MCP201",
      "article-title": "Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multi-body docking server",
      "volume": "9",
      "author": "Karaca",
      "year": "2010",
      "journal-title": "Mol. Cell Proteomics"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0120",
      "doi-asserted-by": "crossref",
      "first-page": "2195",
      "DOI": "10.1073/pnas.89.6.2195",
      "article-title": "Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques",
      "volume": "89",
      "author": "Katchalski-Katzir",
      "year": "1992",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0125",
      "doi-asserted-by": "crossref",
      "first-page": "1277",
      "DOI": "10.1107/S0021889803012779",
      "article-title": "PRIMUS: a Windows PC-based system for small-angle scattering data analysis",
      "volume": "36",
      "author": "Konarev",
      "year": "2003",
      "journal-title": "J. Appl. Crystallogr."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0130",
      "doi-asserted-by": "crossref",
      "first-page": "637",
      "DOI": "10.1038/nature04670",
      "article-title": "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae",
      "volume": "440",
      "author": "Krogan",
      "year": "2006",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0135",
      "doi-asserted-by": "crossref",
      "unstructured": "Lamdan, Y., Wolfson, H.J., 1988. Geometric hashing: a general and efficient model-based recognition scheme. In: Second International Conference on Computer Vision. pp. 238\u2013249.",
      "DOI": "10.1109/CCV.1988.589995"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0140",
      "doi-asserted-by": "crossref",
      "first-page": "180",
      "DOI": "10.1016/j.jmb.2009.02.031",
      "article-title": "Inferential optimization for simultaneous fitting of multiple components into a CryoEM map of their assembly",
      "volume": "388",
      "author": "Lasker",
      "year": "2009",
      "journal-title": "J. Mol. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0145",
      "doi-asserted-by": "crossref",
      "first-page": "704",
      "DOI": "10.1002/prot.21804",
      "article-title": "Docking and scoring protein complexes: CAPRI, third ed.",
      "volume": "69",
      "author": "Lensink",
      "year": "2007",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0150",
      "doi-asserted-by": "crossref",
      "first-page": "W229",
      "DOI": "10.1093/nar/gkn186",
      "article-title": "FireDock: a web server for fast interaction refinement in molecular docking",
      "volume": "36",
      "author": "Mashiach",
      "year": "2008",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0155",
      "doi-asserted-by": "crossref",
      "first-page": "51",
      "DOI": "10.1002/prot.10393",
      "article-title": "Assessment of blind predictions of protein-protein interactions: current status of docking methods",
      "volume": "52",
      "author": "Mendez",
      "year": "2003",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0160",
      "doi-asserted-by": "crossref",
      "first-page": "150",
      "DOI": "10.1002/prot.20551",
      "article-title": "Assessment of CAPRI predictions in rounds 3\u20135 shows progress in docking procedures",
      "volume": "60",
      "author": "Mendez",
      "year": "2005",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0165",
      "doi-asserted-by": "crossref",
      "first-page": "174",
      "DOI": "10.4149/gpb_2009_02_174",
      "article-title": "Structure and flexibility within proteins as identified through small angle X-ray scattering",
      "volume": "28",
      "author": "Pelikan",
      "year": "2009",
      "journal-title": "Gen. Physiol. Biophys."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0170",
      "doi-asserted-by": "crossref",
      "first-page": "1237",
      "DOI": "10.1529/biophysj.105.064154",
      "article-title": "Global rigid body modeling of macromolecular complexes against small-angle scattering data",
      "volume": "89",
      "author": "Petoukhov",
      "year": "2005",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0175",
      "doi-asserted-by": "crossref",
      "first-page": "562",
      "DOI": "10.1016/j.sbi.2007.06.009",
      "article-title": "Analysis of X-ray and neutron scattering from biomacromolecular solutions",
      "volume": "17",
      "author": "Petoukhov",
      "year": "2007",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0180",
      "doi-asserted-by": "crossref",
      "first-page": "191",
      "DOI": "10.1017/S0033583507004635",
      "article-title": "X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution",
      "volume": "40",
      "author": "Putnam",
      "year": "2007",
      "journal-title": "Q. Rev. Biophys."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0185",
      "doi-asserted-by": "crossref",
      "first-page": "1",
      "DOI": "10.2174/138920308783565741",
      "article-title": "Recent progress and future directions in protein-protein docking",
      "volume": "9",
      "author": "Ritchie",
      "year": "2008",
      "journal-title": "Curr. Protein Pept. Sci."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0190",
      "doi-asserted-by": "crossref",
      "first-page": "973",
      "DOI": "10.1038/nature06523",
      "article-title": "The molecular sociology of the cell",
      "volume": "450",
      "author": "Robinson",
      "year": "2007",
      "journal-title": "Nature"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0195",
      "doi-asserted-by": "crossref",
      "first-page": "764",
      "DOI": "10.1002/prot.21759",
      "article-title": "Automatic prediction of protein interactions with large scale motion",
      "volume": "69",
      "author": "Schneidman-Duhovny",
      "year": "2007",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0200",
      "doi-asserted-by": "crossref",
      "first-page": "W540",
      "DOI": "10.1093/nar/gkq461",
      "article-title": "FoXS: a web server for rapid computation and fitting of SAXS Profiles",
      "volume": "38",
      "author": "Schneidman-Duhovny",
      "year": "2010",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0205",
      "doi-asserted-by": "crossref",
      "first-page": "224",
      "DOI": "10.1002/prot.20562",
      "article-title": "Geometry-based flexible and symmetric protein docking",
      "volume": "60",
      "author": "Schneidman-Duhovny",
      "year": "2005",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0210",
      "doi-asserted-by": "crossref",
      "first-page": "W363",
      "DOI": "10.1093/nar/gki481",
      "article-title": "PatchDock and SymmDock: servers for rigid and symmetric docking",
      "volume": "33",
      "author": "Schneidman-Duhovny",
      "year": "2005",
      "journal-title": "Nucleic Acids Res."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0215",
      "doi-asserted-by": "crossref",
      "first-page": "107",
      "DOI": "10.1002/prot.10397",
      "article-title": "Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking",
      "volume": "52",
      "author": "Schneidman-Duhovny",
      "year": "2003",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0220",
      "doi-asserted-by": "crossref",
      "first-page": "16632",
      "DOI": "10.1073/pnas.0508315102",
      "article-title": "Computational docking and solution x-ray scattering predict a membrane-interacting role for the histone domain of the Ras activator son of sevenless",
      "volume": "102",
      "author": "Sondermann",
      "year": "2005",
      "journal-title": "Proc. Natl. Acad. Sci. USA"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0225",
      "doi-asserted-by": "crossref",
      "first-page": "186",
      "DOI": "10.1016/j.jsb.2008.06.002",
      "article-title": "The future is hybrid",
      "volume": "163",
      "author": "Steven",
      "year": "2008",
      "journal-title": "J. Struct. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0230",
      "doi-asserted-by": "crossref",
      "first-page": "768",
      "DOI": "10.1107/S0021889895007047",
      "article-title": "CRYSOL - a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates",
      "volume": "28",
      "author": "Svergun",
      "year": "1995",
      "journal-title": "J. Appl. Crystallogr."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0235",
      "doi-asserted-by": "crossref",
      "first-page": "2879",
      "DOI": "10.1016/S0006-3495(99)77443-6",
      "article-title": "Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing",
      "volume": "76",
      "author": "Svergun",
      "year": "1999",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0240",
      "doi-asserted-by": "crossref",
      "first-page": "2946",
      "DOI": "10.1016/S0006-3495(01)76260-1",
      "article-title": "Determination of domain structure of proteins from X-ray solution scattering",
      "volume": "80",
      "author": "Svergun",
      "year": "2001",
      "journal-title": "Biophys. J."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0245",
      "doi-asserted-by": "crossref",
      "first-page": "601",
      "DOI": "10.1016/j.sbi.2008.08.002",
      "article-title": "Experimental approaches for solution X-ray scattering and fiber diffraction",
      "volume": "18",
      "author": "Tsuruta",
      "year": "2008",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0250",
      "doi-asserted-by": "crossref",
      "first-page": "176",
      "DOI": "10.1002/prot.20554",
      "article-title": "Classification of protein complexes based on docking difficulty",
      "volume": "60",
      "author": "Vajda",
      "year": "2005",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0255",
      "doi-asserted-by": "crossref",
      "first-page": "164",
      "DOI": "10.1016/j.sbi.2009.02.008",
      "article-title": "Convergence and combination of methods in protein-protein docking",
      "volume": "19",
      "author": "Vajda",
      "year": "2009",
      "journal-title": "Curr. Opin. Struct. Biol."
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0260",
      "doi-asserted-by": "crossref",
      "first-page": "232",
      "DOI": "10.1002/prot.20563",
      "article-title": "Data-driven docking: HADDOCK\u2019s adventures in CAPRI",
      "volume": "60",
      "author": "van Dijk",
      "year": "2005",
      "journal-title": "Proteins"
    },
    {
      "key": "10.1016/j.jsb.2010.09.023_b0265",
      "doi-asserted-by": "crossref",
      "first-page": "323",
      "DOI": "10.1016/0022-2836(78)90302-9",
      "article-title": "Computer analysis of protein-protein interaction",
      "volume": "124",
      "author": "Wodak",
      "year": "1978",
      "journal-title": "J. Mol. Biol."
    }
  ],
  "container-title": "Journal of Structural Biology",
  "original-title": [],
  "language": "en",
  "link": [
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1047847710002923?httpAccept=text/xml",
      "content-type": "text/xml",
      "content-version": "vor",
      "intended-application": "text-mining"
    },
    {
      "URL": "https://api.elsevier.com/content/article/PII:S1047847710002923?httpAccept=text/plain",
      "content-type": "text/plain",
      "content-version": "vor",
      "intended-application": "text-mining"
    }
  ],
  "deposited": {
    "date-parts": [
      [
        2018,
        12,
        7
      ]
    ],
    "date-time": "2018-12-07T16:26:19Z",
    "timestamp": 1544199979000
  },
  "score": 1,
  "resource": {
    "primary": {
      "URL": "https://linkinghub.elsevier.com/retrieve/pii/S1047847710002923"
    }
  },
  "subtitle": [],
  "short-title": [],
  "issued": {
    "date-parts": [
      [
        2011,
        3
      ]
    ]
  },
  "references-count": 53,
  "journal-issue": {
    "issue": "3",
    "published-print": {
      "date-parts": [
        [
          2011,
          3
        ]
      ]
    }
  },
  "alternative-id": [
    "S1047847710002923"
  ],
  "URL": "http://dx.doi.org/10.1016/j.jsb.2010.09.023",
  "relation": {},
  "ISSN": [
    "1047-8477"
  ],
  "subject": [],
  "container-title-short": "Journal of Structural Biology",
  "published": {
    "date-parts": [
      [
        2011,
        3
      ]
    ]
  }
}