DOI: 10.1016/j.jsb.2009.04.013. Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects

Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects

10.1016/j.jsb.2009.04.013

Crossref journal-article

Elsevier BV

Journal of Structural Biology (78)

Bibliography

Prust, C. J., Doerschuk, P. C., Lander, G. C., & Johnson, J. E. (2009). Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects. Journal of Structural Biology, 167(3), 185â199.

Authors 4

Cory J. Prust (first)
Peter C. Doerschuk (additional)
Gabriel C. Lander (additional)
John E. Johnson (additional)

References 25 Referenced 9

10.1017/S0305004100032370 / Proc. Camb. Phil. Soc. / On the symmetries of spherical harmonics by Altmann (1957)
10.1128/MMBR.63.4.862-922.1999 / Microbiol. Mol. Biol. Rev. / Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs by Baker (1999)
{'issue': 'Part 12(1)', 'key': '10.1016/j.jsb.2009.04.013_bib3', 'first-page': '2210', 'article-title': 'Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT', 'volume': 'D60', 'author': 'Blanc', 'year': '2004', 'journal-title': 'Acta Crystallogr.'} / Acta Crystallogr. / Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT by Blanc (2004)
10.1128/JVI.79.12.7745-7755.2005 / J. Virol. / The structure of the poliovirus 135S cell entry intermediate at 10-Angstrom resolution reveals the location of an externalized polypeptide that binds to membranes by Bubeck (2005)
10.1109/18.857786 / IEEE Trans. Info. Theory / Ab initio reconstruction and experimental design for cryo electron microscopy by Doerschuk (2000)
10.1093/biomet/65.3.457 / Biometrika / Assessing the accuracy of the maximum likelihood estimator: observed versus expected Fisher information by Efron (1978)
{'key': '10.1016/j.jsb.2009.04.013_bib7', 'first-page': '163', 'article-title': 'The Fourier transform of an electron micrograph—first order and second order theory of image formation', 'volume': 'vol. 5', 'author': 'Erickson', 'year': '1973'} / The Fourier transform of an electron micrograph—first order and second order theory of image formation by Erickson (1973)
10.1006/jsbi.1996.0030 / J. Struct. Biol. / SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields by Frank (1996)
10.1126/science.7313694 / Science / Computer averaging of electron micrographs of 40S ribosomal subunits by Frank (1981)
{'issue': '4', 'key': '10.1016/j.jsb.2009.04.013_bib10', 'first-page': '146', 'article-title': 'Exact filters for general geometry three dimensional reconstruction', 'volume': '73', 'author': 'Harauz', 'year': '1986', 'journal-title': 'Optik'} / Optik / Exact filters for general geometry three dimensional reconstruction by Harauz (1986)
10.1038/nature04487 / Nature / Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus by Jiang (2006)
10.1126/science.1127981 / Science / The structure of an infectious P22 virion shows the signal for headful DNA packaging by Lander (2006)
10.1515/zna-1948-8-1105 / Z. Naturforschg. / Polyhedral harmonics by Laporte (1948)
{'key': '10.1016/j.jsb.2009.04.013_bib14', 'series-title': 'Theory of Point Estimation', 'author': 'Lehmann', 'year': '1998'} / Theory of Point Estimation by Lehmann (1998)
{'issue': 'Part 4', 'key': '10.1016/j.jsb.2009.04.013_bib15', 'first-page': '458', 'article-title': 'Likelihood-enhanced fast translation functions', 'volume': 'D61', 'author': 'McCoy', 'year': '2005', 'journal-title': 'Acta Crystallogr.'} / Acta Crystallogr. / Likelihood-enhanced fast translation functions by McCoy (2005)
Prust, C.J. 2006. Model-based statistical inference problems concerning non-linear 3-D tomography with applications to the structural biology of asymmetric virus particles. Ph.D. thesis, School of Electrical and Computer Engineering, Purdue University, West Lafayette, Indiana, USA.
10.1111/j.1365-2818.1982.tb00405.x / J. Microsc. / The correlation averaging of a regularly arranged bacterial cell envelope protein by Saxton (1982)
10.1038/nmeth992 / Nat. Methods / Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization by Scheres (2007)
10.1063/1.1698233 / J. Appl. Phys. / The theoretical resolution limit of the electron microscope by Scherzer (1949)
10.1016/j.jsb.2003.11.028 / J. Struct. Biol. / Image segmentation for automatic particle identification in electron micrographs based on hidden markov random field models and expectation maximization by Singh (2004)
10.1016/0304-3991(87)90010-6 / Ultramicroscopy / Similarity measures between images by van Heel (1987)
10.1016/j.jsb.2005.05.009 / J. Struct. Biol. / Fourier shell correlation threshold criteria by van Heel (2005)
10.1016/j.jsb.2003.09.023 / J. Struct. Biol. / A statistical approach to computer processing of cryo electron microscope images: virion classification and 3-D reconstruction by Yin (2003)
10.1073/pnas.0807848105 / PNAS / Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses by Zhang (2008)
Zheng, Y. 2002. Parallel implementations of 3-D reconstruction algorithms for cryo electron microscopy: a comparative study. Master’s thesis, School of Electrical and Computer Engineering, Purdue University, West Lafayette, Indiana, USA.

Dates

Type	When
Created	16 years, 3 months ago (May 19, 2009, 5:49 a.m.)
Deposited	5 years, 3 months ago (May 18, 2020, 6:42 a.m.)
Indexed	5 months ago (March 24, 2025, 3:04 a.m.)
Issued	15 years, 11 months ago (Sept. 1, 2009)
Published	15 years, 11 months ago (Sept. 1, 2009)
Published Print	15 years, 11 months ago (Sept. 1, 2009)

Funders 0

None

BibTeX

@article{Prust_2009, title={Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects}, volume={167}, ISSN={1047-8477}, url={http://dx.doi.org/10.1016/j.jsb.2009.04.013}, DOI={10.1016/j.jsb.2009.04.013}, number={3}, journal={Journal of Structural Biology}, publisher={Elsevier BV}, author={Prust, Cory J. and Doerschuk, Peter C. and Lander, Gabriel C. and Johnson, John E.}, year={2009}, month=sep, pages={185–199} }

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